BAC Information

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BAC

Clone NameB6Ng01-313K09
Chromosome2 (Build37)5 (Build37)
Map Location 70,438,406 - 70,438,45145,179,544 - 45,180,434
singlet/doubletsingletsinglet
Overlap geneGad1
Upstream geneBbs5, Kbtbd10, Fastkd1, Ppig, 4930578N16Rik, Phospho2, LOC433432, Klhl23, Ssb, Mettl5, 4930550G17Rik, Zfp650, Myo3b, LOC100040021, Sp5, 4933404M02Rik, LOC100040068
Downstream geneLOC100039766, Gorasp2, Tlk1, Mettl8, 4833418A01Rik, Cybrd1, Dync1i2, Slc25a12, LOC667528, Hat1, LOC100040177, Metapl1, LOC100040207, Dlx1, Dlx1as, Dlx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313K09.bB6Ng01-313K09.g
ACCGA104798GA104799
length338892
definitionB6Ng01-313K09.b B6Ng01-313K09.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(70,438,406 - 70,438,451)(45,179,544 - 45,180,434)
sequence
cttgtgctggatatggtaacacatgccttttaaaatttttccattaattt
atttattccttttacatcccaataacagttcgccttgcctcttagtcccc
ctctcacacagcctttcccacattcctcctcctcttgttctctgagaagg
gagagatcccacactggcacatcaagagtgacacttgttttaaccacagc
actcaggaggctgaggcgggtggatttttaggagttcaatgtcatctttt
cctacgtagtaagtaccaagactcatagtgagactgtcttcagaaaagaa
gaaggaggaggagcaggaggaggaggaggaggaggagg
gaattcactaccttgaaagtaatagacattgccgaatcagagcctttaac
agtgggtaatatgcacaattacctcattccagttctaagttagaaattcc
agccaattgcagattaatcacagataaagcaataaggcataggaatggat
gttactgtctgtatgtgtgctgccaaatggtctgcttggtttattggctt
agcttttgcttgtctatacaactttttagtatcatgatacaatccccatg
agtcctaagaagtgacctacattgggaagcaaaatttaacaagctctata
ggaaaggagagagagagagagagagagagagagagagagagagagagaga
gagagagagagagagatctacaaataatttgttatagtctaactatgcaa
tgtatatctctaaagaggttgataatcattgtttattgacacagaactct
taataaaaatcacaggtgtggaggctggaaagatggctcagtggttaaga
acactggctgttcttccaaaagacccaggttcaatttccagccgccacat
ggcagctcacaactgtgtgagagtccagttgcagctggtgggacactctc
acacacacatacaaacagacagaacaacaatgtacataaaataaaaataa
gtaattttaaaaaaaaaattacaagtgcctggtggagaaagtattgaaaa
aacatatgtcatgtagcatcaatagatatatgtatgcagaattcactata
aacaattgaggggtatccactgtgaaaatttgggggaaggtcaacacaat
gtggcaatgtttgtcatgagtacatggacctaatccctctgtcagtgaga
ctgcgtagaacagcttggtggcatcctgatccaggtgtgagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_70438406_70438451
seq2: B6Ng01-313K09.b_343_388 (reverse)

seq1  CCTTCTCCTTCTCCTTCTCCTCCTCCTCCTCCTCCTTCTTCTTTTC  46
      ||| ||||| ||||| |||||||| |||||||||||||||||||||
seq2  CCTCCTCCTCCTCCTCCTCCTCCTGCTCCTCCTCCTTCTTCTTTTC  46

seq1: chr5_45179544_45180434
seq2: B6Ng01-313K09.g_70_961

seq1  GAATTCACTACCTTGAAAGTAATAGACATTGCCGAATCAGAGCCTTTAAC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTACCTTGAAAGTAATAGACATTGCCGAATCAGAGCCTTTAAC  50

seq1  AGTGGGTAATATGCACAATTACCTCATTCCAGTTCTAAGTTAGAAATTCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGGTAATATGCACAATTACCTCATTCCAGTTCTAAGTTAGAAATTCC  100

seq1  AGCCAATTGCAGATTAATCACAGATAAAGCAATAAGGCATAGGAATGGAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCAATTGCAGATTAATCACAGATAAAGCAATAAGGCATAGGAATGGAT  150

seq1  GTTACTGTCTGTATGTGTGCTGCCAAATGGTCTGCTTGGTTTATTGGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTGTCTGTATGTGTGCTGCCAAATGGTCTGCTTGGTTTATTGGCTT  200

seq1  AGCTTTTGCTTGTCTATACAACTTTTTAGTATCATGATACAATCCCCATG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTTGCTTGTCTATACAACTTTTTAGTATCATGATACAATCCCCATG  250

seq1  AGTCCTAAGAAGTGACCTACATTGGGAAGCAAAATTTAACAAGCTCTATA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTAAGAAGTGACCTACATTGGGAAGCAAAATTTAACAAGCTCTATA  300

seq1  GGAAAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAAGGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGA  350

seq1  GAGAGAGAGAGAGAGATCTACAAATAATTTGTTATAGTCTAACTATGCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAGAGAGATCTACAAATAATTTGTTATAGTCTAACTATGCAA  400

seq1  TGTATATCTCTAAAGAGGTTGATAATCATTGTTTATTGACACAGAACTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATATCTCTAAAGAGGTTGATAATCATTGTTTATTGACACAGAACTCT  450

seq1  TAATAAAAATCACAGGTGTGGAGGCTGGAAAGATGGCTCAGTGGTTAAGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAAATCACAGGTGTGGAGGCTGGAAAGATGGCTCAGTGGTTAAGA  500

seq1  ACACTGGCTGTTCTTCCAAAAGACCCAGGTTCAATTTCCAGCCGCCACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGGCTGTTCTTCCAAAAGACCCAGGTTCAATTTCCAGCCGCCACAT  550

seq1  GGCAGCTCACAACTGTGTGAGAGTCCAGTTGCAGCTGGTGGGACACTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGCTCACAACTGTGTGAGAGTCCAGTTGCAGCTGGTGGGACACTCTC  600

seq1  ACACACACATACAAACAGACAGAACAACAATGTACATAAAATAAAAATAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACACACATACAAACAGACAGAACAACAATGTACATAAAATAAAAATAA  650

seq1  GTAATTTTAAAAAAAAAATTACAAGTGCCTGGTGGAGAAAGTATTG-AAA  699
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  GTAATTTTAAAAAAAAAATTACAAGTGCCTGGTGGAGAAAGTATTGAAAA  700

seq1  AACATATGTCATGTAGCATCAATAGATATATGTATGCAGAATTCACTATA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATATGTCATGTAGCATCAATAGATATATGTATGCAGAATTCACTATA  750

seq1  AACAATTGAGGGGTATCCACTGTG-AAATTTGGGGGAAGGTCAACACAAT  798
      |||||||||||||||||||||||| |||||||||||||||||||||||||
seq2  AACAATTGAGGGGTATCCACTGTGAAAATTTGGGGGAAGGTCAACACAAT  800

seq1  GTGGCAATG-TTGTCATGAGTACAATGGACCTAATCCCTCTGTCCAGTGA  847
      ||||||||| ||||||||||||| ||||||||||||||||||| ||||||
seq2  GTGGCAATGTTTGTCATGAGTAC-ATGGACCTAATCCCTCTGT-CAGTGA  848

seq1  GACTGCGTAGAACAGCTT-GTGGCATCCCTGATCACGGTGTGAGT  891
      |||||||||||||||||| ||||||| |||||||  |||||||||
seq2  GACTGCGTAGAACAGCTTGGTGGCAT-CCTGATCCAGGTGTGAGT  892