BAC Information

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BAC

Clone NameB6Ng01-313P01
Chromosome2 (Build37)
Map Location 178,507,480 - 178,608,877
singlet/doubletdoublet
Overlap geneLOC100039368
Upstream geneLOC626802, LOC329575, LOC433515, LOC665205, OTTMUSG00000016327, LOC100039263, LOC626848, 2810021G02Rik, Phactr3, Sycp2, Ppp1r3d, 9030418K01Rik, Cdh26
Downstream geneLOC665264, LOC100043168, LOC100039413, Cdh4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-313P01.bB6Ng01-313P01.g
ACCGA105015GA105016
length1,177986
definitionB6Ng01-313P01.b B6Ng01-313P01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(178,607,714 - 178,608,877)(178,507,480 - 178,508,355)
sequence
gaattcagaagactggcaggctatgggccaagcatggtgaagacccagga
ctcacatcagaaggaagttggcagtcacttggaatgatcatattgatgta
aagtaaacttaagcttgtccccttggctatcctggacctttggccttctc
ctagcccaaagtaccaaaagtcaaagctatgatttctgttcatgggatcc
ctgccttctgcccatgggacctctgtcttctgcccatgaaatacctgcct
tctgctcaggatccagagggagacttaactggagaacacaagtgcagaat
ccaacaagagtgtggctctgcctcttcactcagcctggcacctatctctc
cacccaagggcttctttgagccttcatagagctaagagctgtgtgtgcat
aggggctccatcctctctccagcctggggaagacccttgaccttgtagcc
ccatgcttgcccctcagactctctcacagctcctgcagactctcccacac
tctccagcctttctccagagcacttctcatgtctggcatttcctgcttga
ccctaagttaagtgagataaatgttagactggtcccctaggatcttagag
aatttaccttgtcagagacggcccgtgacactatagggtttcttggtgat
catattaagtctgagtaattctcttctttgatgcccagtcctttgtctaa
agaggagttttgtggtatgtagaaaaggcagatggagccatcttcagagg
gcatgacaagaaggagtgtgggagttagtcactctcttttctaaatgaca
tctctctgttcttttgtgagttgaaatcttactctttttctgaaaacaca
gtggggggcagagtcccaagaccccacttagccatgaacatctgggtgct
gggtgccaacccattgggcctgatatcaaaagtcactgtcttccacaatg
agtatctgagtgcgagctagaagctgcctaagaatccacagttttcggcg
tgttagcttttactttcacataaaacagaaataaaaaaattaccgaaatt
tcagaaaaaaagaagagctggcttctgcttctaagagaaattcctgtgac
catgcttcttgacattgatctggattgggaggccacacctactcattcct
tctggaaggaatggctttaattaaggt

gaattcactgggtctgagagtgagctgtgtagagctagacataatgaaag
aatccccctgtaaattggcttttatctgttaaggataaagttggactttc
tttactcctgctctggccaaacaccaggggtatctcatcatcatcatcat
caaaatctttatattgatcacaacatcatatatatgctgattctacatgg
tagtagttgtgagcctcctccataagaagcctagcttgtgggaacacttg
ccaccccactctgcctccctccttactctgttgtgtatgacctgtgaggg
agcaaatgcccggagtgtaccccagatcaacagtgcatgtggtctcctcc
ctacttactgatacagtcagtctgggagtgccgagggccacgaaggaggg
aggacaaatggcttcagaactcacggaatgcagcccacgggttaccatag
ccacatgggtgggccttggtgtggcacagccccgaggactgtgtcctgag
gactttgtgctgttgtggagatctgctctgcttgctaccctcacatccct
ctgactcgagtatatgaaaactcttaagggagcttccagcccctgactgc
gcagtatctccggcactcacaacaacaatgcttgatctctttgaggcatt
gctgccaggtcggatcatgattctgtcatcaccctagagaagaattcaga
gctgtagatcgtcagcaatgaccaccacacttagaaaacatttggaaaag
gaaagtttccagtgaagctaggttgagatgttttcactactggatctgat
gcaaaaaaaaaaacttagggaacaatatgaagttcagaaaggcacactct
tattcgttaagctagcgtcaggaaagaagaacagtgggcggcactggctg
acgtgactctcactgaggctggactggtgaggattgatttcctgtaccca
tttttgccctcagcttcctgataggatttcttaaga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_178607714_178608877
seq2: B6Ng01-313P01.b_50_1226 (reverse)

seq1  ACCTAAATTAAAACCATTTCCTTCCCAGAGGAATGAGTAGGTTGGTGCCT  50
      |||| ||||||| ||| ||||||||   ||||||||||||| ||  ||||
seq2  ACCTTAATTAAAGCCA-TTCCTTCCAGAAGGAATGAGTAGG-TGTGGCCT  48

seq1  CCCTACTCAGATCCATGTC-AGGAGCATG--CACAGGAA--TCTCTTATG  95
      ||| |  |||||| ||||| || ||||||  ||||||||  |||||||  
seq2  CCCAATCCAGATCAATGTCAAGAAGCATGGTCACAGGAATTTCTCTTAGA  98

seq1  AGCAGTAGCCAGCTCT--TTTTTTTTTGAAATTT-GGTAATTTTTT--AT  140
      ||||| ||||||||||  ||||||| |||||||| |||||||||||   |
seq2  AGCAGAAGCCAGCTCTTCTTTTTTTCTGAAATTTCGGTAATTTTTTTATT  148

seq1  TCTGTTTTATGTGAAAGTTAAAAGCTAACACG-CGAAACTTGTGGA-TCT  188
      ||||||||||||||||| |||||||||||||| |||||  |||||| |||
seq2  TCTGTTTTATGTGAAAG-TAAAAGCTAACACGCCGAAAACTGTGGATTCT  197

seq1  TAGGCAGCTTCTAGCTCGGTCTCAGATACTCATTGTGGAAGACAGTGACT  238
      ||||||||||||||||||  ||||||||||||||||||||||||||||||
seq2  TAGGCAGCTTCTAGCTCGCACTCAGATACTCATTGTGGAAGACAGTGACT  247

seq1  TTTGATATCAGG-CCAATGGGTTGGCACCCAGCACCCAGATGTTCATGGC  287
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  TTTGATATCAGGCCCAATGGGTTGGCACCCAGCACCCAGATGTTCATGGC  297

seq1  TAAGTGGGTTC-TGGGACTCTG-CCCCCACTGTGTTTTCAGAAAAAGAGT  335
      |||||||| || |||||||||| |||||||||||||||||||||||||||
seq2  TAAGTGGGGTCTTGGGACTCTGCCCCCCACTGTGTTTTCAGAAAAAGAGT  347

seq1  -AGATTTCAACTCACAAAAGAACAGAGAGATGTCATTTAGAAAAGAGAGT  384
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTCAACTCACAAAAGAACAGAGAGATGTCATTTAGAAAAGAGAGT  397

seq1  GACTAACTCCCACACTCCTTCTTGTCATGCCCTCTGAAGATGGCTCCATC  434
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTAACTCCCACACTCCTTCTTGTCATGCCCTCTGAAGATGGCTCCATC  447

seq1  TGCCTTTTCTACATACCACAAAACTCCTCTTTAGACAAAGGACTGGGCAT  484
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTTTCTACATACCACAAAACTCCTCTTTAGACAAAGGACTGGGCAT  497

seq1  CAAAGAAGAGAATTACTCAGACTTAATATGATCACCAAGAAACCCTATAG  534
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAGAGAATTACTCAGACTTAATATGATCACCAAGAAACCCTATAG  547

seq1  TGTCACGGGCCGTCTCTGACAAGGTAAATTCTCTAAGATCCTAGGGGACC  584
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACGGGCCGTCTCTGACAAGGTAAATTCTCTAAGATCCTAGGGGACC  597

seq1  AGTCTAACATTTATCTCACTTAACTTAGGGTCAAGCAGGAAATGCCAGAC  634
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTAACATTTATCTCACTTAACTTAGGGTCAAGCAGGAAATGCCAGAC  647

seq1  ATGAGAAGTGCTCTGGAGAAAGGCTGGAGAGTGTGGGAGAGTCTGCAGGA  684
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAGTGCTCTGGAGAAAGGCTGGAGAGTGTGGGAGAGTCTGCAGGA  697

seq1  GCTGTGAGAGAGTCTGAGGGGCAAGCATGGGGCTACAAGGTCAAGGGTCT  734
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTGAGAGAGTCTGAGGGGCAAGCATGGGGCTACAAGGTCAAGGGTCT  747

seq1  TCCCCAGGCTGGAGAGAGGATGGAGCCCCTATGCACACACAGCTCTTAGC  784
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCAGGCTGGAGAGAGGATGGAGCCCCTATGCACACACAGCTCTTAGC  797

seq1  TCTATGAAGGCTCAAAGAAGCCCTTGGGTGGAGAGATAGGTGCCAGGCTG  834
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATGAAGGCTCAAAGAAGCCCTTGGGTGGAGAGATAGGTGCCAGGCTG  847

seq1  AGTGAAGAGGCAGAGCCACACTCTTGTTGGATTCTGCACTTGTGTTCTCC  884
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAAGAGGCAGAGCCACACTCTTGTTGGATTCTGCACTTGTGTTCTCC  897

seq1  AGTTAAGTCTCCCTCTGGATCCTGAGCAGAAGGCAGGTATTTCATGGGCA  934
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTAAGTCTCCCTCTGGATCCTGAGCAGAAGGCAGGTATTTCATGGGCA  947

seq1  GAAGACAGAGGTCCCATGGGCAGAAGGCAGGGATCCCATGAACAGAAATC  984
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACAGAGGTCCCATGGGCAGAAGGCAGGGATCCCATGAACAGAAATC  997

seq1  ATAGCTTTGACTTTTGGTACTTTGGGCTAGGAGAAGGCCAAAGGTCCAGG  1034
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCTTTGACTTTTGGTACTTTGGGCTAGGAGAAGGCCAAAGGTCCAGG  1047

seq1  ATAGCCAAGGGGACAAGCTTAAGTTTACTTTACATCAATATGATCATTCC  1084
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCAAGGGGACAAGCTTAAGTTTACTTTACATCAATATGATCATTCC  1097

seq1  AAGTGACTGCCAACTTCCTTCTGATGTGAGTCCTGGGTCTTCACCATGCT  1134
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGACTGCCAACTTCCTTCTGATGTGAGTCCTGGGTCTTCACCATGCT  1147

seq1  TGGCCCATAGCCTGCCAGTCTTCTGAATTC  1164
      ||||||||||||||||||||||||||||||
seq2  TGGCCCATAGCCTGCCAGTCTTCTGAATTC  1177


seq1: chr2_178507480_178508355
seq2: B6Ng01-313P01.g_66_942

seq1  GAATTCACTGGGTCTGAGAGTGAGCTGTGTAGAGCTAGACATAATGAAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGGGTCTGAGAGTGAGCTGTGTAGAGCTAGACATAATGAAAG  50

seq1  AATCCCCCTGTAAATTGGCTTTTATCTGTTAAGGATAAAGTTGGACTTTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCCCCTGTAAATTGGCTTTTATCTGTTAAGGATAAAGTTGGACTTTC  100

seq1  TTTACTCCTGCTCTGGCCAAACACCAGGGGTATCTCATCATCATCATCAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTCCTGCTCTGGCCAAACACCAGGGGTATCTCATCATCATCATCAT  150

seq1  CAAAATCTTTATATTGATCACAACATCATATATATGCTGATTCTACATGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATCTTTATATTGATCACAACATCATATATATGCTGATTCTACATGG  200

seq1  TAGTAGTTGTGAGCCTCCTCCATAAGAAGCCTAGCTTGTGGGAACACTTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTAGTTGTGAGCCTCCTCCATAAGAAGCCTAGCTTGTGGGAACACTTG  250

seq1  CCACCCCACTCTGCCTCCCTCCTTACTCTGTTGTGTATGACCTGTGAGGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCCCACTCTGCCTCCCTCCTTACTCTGTTGTGTATGACCTGTGAGGG  300

seq1  AGCAAATGCCCGGAGTGTACCCCAGATCAACAGTGCATGTGGTCTCCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATGCCCGGAGTGTACCCCAGATCAACAGTGCATGTGGTCTCCTCC  350

seq1  CTACTTACTGATACAGTCAGTCTGGGAGTGCCGAGGGCCACGAAGGAGGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTTACTGATACAGTCAGTCTGGGAGTGCCGAGGGCCACGAAGGAGGG  400

seq1  AGGACAAATGGCTTCAGAACTCACGGAATGCAGCCCACGGGTTACCATAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACAAATGGCTTCAGAACTCACGGAATGCAGCCCACGGGTTACCATAG  450

seq1  CCACATGGGTGGGCCTTGGTGTGGCACAGCCCCGAGGACTGTGTCCTGAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATGGGTGGGCCTTGGTGTGGCACAGCCCCGAGGACTGTGTCCTGAG  500

seq1  GACTTTGTGCTGTTGTGGAGATCTGCTCTGCTTGCTACCCTCACATCCCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACTTTGTGCTGTTGTGGAGATCTGCTCTGCTTGCTACCCTCACATCCCT  550

seq1  CTGACTCGAGTATATGAAAACTCTTAAGGGAGCTTCCAGCCCCTGACTGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGACTCGAGTATATGAAAACTCTTAAGGGAGCTTCCAGCCCCTGACTGC  600

seq1  GCAGTATCTCCGGCACTCACAACAACAATGCTTGATCTCTTTGAGGCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTATCTCCGGCACTCACAACAACAATGCTTGATCTCTTTGAGGCATT  650

seq1  GCTGCCAGGTCGGATCATGATTCTGTCATCACCCTAGAGAAGAATTCAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGCCAGGTCGGATCATGATTCTGTCATCACCCTAGAGAAGAATTCAGA  700

seq1  GCTGTAGATCGTCAGCAATGACCACCACACTTAGAAAACATTTGGAAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAGATCGTCAGCAATGACCACCACACTTAGAAAACATTTGGAAAAG  750

seq1  GAAAGTTTCCAGTGAAGCTAGGTTGAGATGTTTTCACTACTGGATCTGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGTTTCCAGTGAAGCTAGGTTGAGATGTTTTCACTACTGGATCTGAT  800

seq1  GC-AAAAAAAAAACTTAGGGAACAATATGAAGTTCAGAAAGGCACACTCT  849
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAAAAAAAAACTTAGGGAACAATATGAAGTTCAGAAAGGCACACTCT  850

seq1  TATTCGTTAAGCTAGCGTCAGGGAAGA  876
      |||||||||||||||||||||| ||||
seq2  TATTCGTTAAGCTAGCGTCAGGAAAGA  877


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