BAC Information

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BAC

Clone NameB6Ng01-316H17
Chromosome2 (Build37)
Map Location 40,813,139 - 40,887,581
singlet/doubletdoublet
Overlap geneLrp1b
Upstream geneLOC100042604, Magmas-ps, LOC666531
Downstream geneLOC100042629, LOC625094
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316H17.bB6Ng01-316H17.g
ACCGA106867GA106868
length1,0911,151
definitionB6Ng01-316H17.b B6Ng01-316H17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,886,490 - 40,887,581)(40,813,139 - 40,814,303)
sequence
gaattcccttaacttctctttgttcaagaaagaacgcttttcttctttaa
ttttgaagactaactttcctggatttggaattctctgctggaacattgat
tttcctctcagtgcattataatttcacattgtaatatgattcacatatgg
ttaaagtacgatatctgacatgtgatttttagctttgtttatagttaagt
gagtttgtctttgctgctttcaggattttctgtctgggtctggcttccgt
cagagtgatgctatagtcattgatacgtcatagtcatagctgtttgctgc
cttggtgtaatttctctctttcatctaagtagcttgtccttctgtaaggt
tttggatctccagtatttgtcagtaagttttggagaattacgtcatttat
acttcaaagtgtttcttctgcttcttatttttattcaataatgtgcattt
ctggcattagaaagtgtgaaacaattttcaataattcattgcaggcttta
atattttcatgcttgtgtaaatggacaggtgacctggactatgctaattc
ccactgcatgctttgtcttcttacttacactttctaggagaatagtcatt
tttttgtttgtttgtttgtttgtttgtttgtttgttgggcttttctttta
ttctaaggaaggcaatcatcatgtttttgttttgcttcattatttagctt
agcaaaacccctgaatactgctattactcactgccttcacattgcaaatt
agatcacataccttgttcacatagttattcctctgtgtcctgtgatctca
catttcctccacacatcctacctttcaatatcattcttagtctctgacca
tctgacttcttttgtaaatggcatttataaaggagaatcgtgtttacttc
ttaagacacagttttactctatagctcagcatcacctaaagctagctatg
tagcccagggtagcccttgaaattgcagcatctaactcctcagcttatcc
agaactggagtggcagtgtatcccactaacccagtctcctatagtgattt
ataaaacatcacacaacacacacaacgcacacacacacaca

gaattcaaagaaggaactgaagcaaagagtagagaagggtgctacacact
ggcttgctcttgctttttcagaatcccctcttagagtactcaggaccaaa
cataatgaactgtgctttccaacatcaatcattaataaagaaaatacaac
ataggctttcccacaggtcaatatattggggacattttcttatttgagat
tttcactccataagtgactctggcttgtgttgaggtgacaaaaaatatag
ccagcacaaactatgacttaattatattttgtgttggtagagaatttaac
acagccttatacattccaggtaagtgatctgacactgagctagaactcta
accattcaaacagtctttattttcaaattaattgtatttagtagtaggaa
aaaataattgaatataagtatatatttttttcaatactggagaaaaaaag
aaattgctctctcaagtttatccttcctagattacaaaaggaaggataaa
cttaagagaacaatttcttttttctattaaacatatatttaaaataattt
taattaacatatatttatatgttatataaaatatatgttacaaaaagaat
aatataatgtaattatacaattattatatataattttttaattgtaaggc
tgatgtatctcagttacacaattttatttttttattttctcaatcataag
atacatatgctctgaaggagtcgccattgagatgcggatgaagaaggagg
ccaggagaagaccaagatggcagggatacaaacgtggttgatataagtgg
tctgtatacagagtctgctaatggaaaagatactttggaaggtgctggag
acacttcagaagtgatggatacctaggcaggctctgtggatgaggagaat
gggtggcagttgggagaagtcaagttgcaatgcagaatatgtgcaaagtg
tttcatcgctctcacttgggaataagaacaacatcgtcatgtctgccttt
tatgacaactacatcttcactgaaatgtatgcatcacaaggtgggaatac
tgcctttctcggagcagccaaattaaagtaatgagcctcttttgcgaact
gacagtagctcgaagaaacggatggaacatcaaatcatgttctcgaagat
a
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_40886490_40887581
seq2: B6Ng01-316H17.b_43_1133 (reverse)

seq1  TGTGTGTGTGTGTGTG-TGTGTGTG-TGTGTGATGTTTTATAAATCACTA  48
      |||||||||||||| | |||||||| ||||||||||||||||||||||||
seq2  TGTGTGTGTGTGTGCGTTGTGTGTGTTGTGTGATGTTTTATAAATCACTA  50

seq1  TAGGAGAACTGGGTTTAGTGGGATTACACTTGCCACTCCAGTTCTGGATA  98
      |||||| |||||| ||||||||| ||||| ||||||||||||||||||||
seq2  TAGGAG-ACTGGG-TTAGTGGGA-TACAC-TGCCACTCCAGTTCTGGATA  96

seq1  AGCTGAGGAGTTAGATTGCTGCAATTTCAA-GGCTACCCTGGGCTACATA  147
      ||||||||||||||| |||||||||||||| |||||||||||||||||||
seq2  AGCTGAGGAGTTAGA-TGCTGCAATTTCAAGGGCTACCCTGGGCTACATA  145

seq1  GCTAGCTTTAGGTGATGCTGAGCTATAGAGTAAAACTGTGTCTTAAGAAG  197
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGCTTTAGGTGATGCTGAGCTATAGAGTAAAACTGTGTCTTAAGAAG  195

seq1  TAAACACGATTCTCC-TTATAAATGCCATTTACAAAAGAAGTCAGATGGT  246
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  TAAACACGATTCTCCTTTATAAATGCCATTTACAAAAGAAGTCAGATGGT  245

seq1  CAGAGACTAAGAATGATATTGAAAGGTAGGATGTGTGGAGGAAATGTGAG  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACTAAGAATGATATTGAAAGGTAGGATGTGTGGAGGAAATGTGAG  295

seq1  ATCACAGGACACAGAGGAATAACTATGTGAACAAGGTATGTGATCTAATT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCACAGGACACAGAGGAATAACTATGTGAACAAGGTATGTGATCTAATT  345

seq1  TGCAATGTGAAGGCAGTGAGTAATAGCAGTATTCAGGGGTTTTGCTAAGC  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAATGTGAAGGCAGTGAGTAATAGCAGTATTCAGGGGTTTTGCTAAGC  395

seq1  TAAATAATGAAGCAAAACAAAAACATGATGATTGCCTTCCTTAGAATAAA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAATGAAGCAAAACAAAAACATGATGATTGCCTTCCTTAGAATAAA  445

seq1  AGAAAAGCCCAACAAACAAACAAACAAACAAACAAACAAACAAAAAAATG  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAAGCCCAACAAACAAACAAACAAACAAACAAACAAACAAAAAAATG  495

seq1  ACTATTCTCCTAGAAAGTGTAAGTAAGAAGACAAAGCATGCAGTGGGAAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTCTCCTAGAAAGTGTAAGTAAGAAGACAAAGCATGCAGTGGGAAT  545

seq1  TAGCATAGTCCAGGTCACCTGTCCATTTACACAAGCATGAAAATATTAAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCATAGTCCAGGTCACCTGTCCATTTACACAAGCATGAAAATATTAAA  595

seq1  GCCTGCAATGAATTATTGAAAATTGTTTCACACTTTCTAATGCCAGAAAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGCAATGAATTATTGAAAATTGTTTCACACTTTCTAATGCCAGAAAT  645

seq1  GCACATTATTGAATAAAAATAAGAAGCAGAAGAAACACTTTGAAGTATAA  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACATTATTGAATAAAAATAAGAAGCAGAAGAAACACTTTGAAGTATAA  695

seq1  ATGACGTAATTCTCCAAAACTTACTGACAAATACTGGAGATCCAAAACCT  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGACGTAATTCTCCAAAACTTACTGACAAATACTGGAGATCCAAAACCT  745

seq1  TACAGAAGGACAAGCTACTTAGATGAAAGAGAGAAATTACACCAAGGCAG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGAAGGACAAGCTACTTAGATGAAAGAGAGAAATTACACCAAGGCAG  795

seq1  CAAACAGCTATGACTATGACGTATCAATGACTATAGCATCACTCTGACGG  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAACAGCTATGACTATGACGTATCAATGACTATAGCATCACTCTGACGG  845

seq1  AAGCCAGACCCAGACAGAAAATCCTGAAAGCAGCAAAGACAAACTCACTT  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCAGACCCAGACAGAAAATCCTGAAAGCAGCAAAGACAAACTCACTT  895

seq1  AACTATAAACAAAGCTAAAAATCACATGTCAGATATCGTACTTTAACCAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTATAAACAAAGCTAAAAATCACATGTCAGATATCGTACTTTAACCAT  945

seq1  ATGTGAATCATATTACAATGTGAAATTATAATGCACTGAGAGGAAAATCA  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTGAATCATATTACAATGTGAAATTATAATGCACTGAGAGGAAAATCA  995

seq1  ATGTTCCAGCAGAGAATTCCAAATCCAGGAAAGTTAGTCTTCAAAATTAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTCCAGCAGAGAATTCCAAATCCAGGAAAGTTAGTCTTCAAAATTAA  1045

seq1  AGAAGAAAAGCGTTCTTTCTTGAACAAAGAGAAGTTAAGGGAATTC  1092
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAAAAGCGTTCTTTCTTGAACAAAGAGAAGTTAAGGGAATTC  1091


seq1: chr2_40813139_40814303
seq2: B6Ng01-316H17.g_65_1215

seq1  GAATTCAAAGAAGGAACTGAAGCAAAGAGTAGAGAAGGGTGCTACACACT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAAGAAGGAACTGAAGCAAAGAGTAGAGAAGGGTGCTACACACT  50

seq1  GGCTTGCTCTTGCTTTTTCAGAATCCCCTCTTAGAGTACTCAGGACCAAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTGCTCTTGCTTTTTCAGAATCCCCTCTTAGAGTACTCAGGACCAAA  100

seq1  CATAATGAACTGTGCTTTCCAACATCAATCATTAATAAAGAAAATACAAC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATGAACTGTGCTTTCCAACATCAATCATTAATAAAGAAAATACAAC  150

seq1  ATAGGCTTTCCCACAGGTCAATATATTGGGGACATTTTCTTATTTGAGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCTTTCCCACAGGTCAATATATTGGGGACATTTTCTTATTTGAGAT  200

seq1  TTTCACTCCATAAGTGACTCTGGCTTGTGTTGAGGTGACAAAAAATATAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTCCATAAGTGACTCTGGCTTGTGTTGAGGTGACAAAAAATATAG  250

seq1  CCAGCACAAACTATGACTTAATTATATTTTGTGTTGGTAGAGAATTTAAC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCACAAACTATGACTTAATTATATTTTGTGTTGGTAGAGAATTTAAC  300

seq1  ACAGCCTTATACATTCCAGGTAAGTGATCTGACACTGAGCTAGAACTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCCTTATACATTCCAGGTAAGTGATCTGACACTGAGCTAGAACTCTA  350

seq1  ACCATTCAAACAGTCTTTATTTTCAAATTAATTGTATTTAGTAGTAGGAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCATTCAAACAGTCTTTATTTTCAAATTAATTGTATTTAGTAGTAGGAA  400

seq1  AAAATAATTGAATATAAGTATATATTTTTTTCAATACTGGAGAAAAAAAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAATTGAATATAAGTATATATTTTTTTCAATACTGGAGAAAAAAAG  450

seq1  AAATTGCTCTCTCAAGTTTATCCTTCCTAGATTACAAAAGGAAGGATAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTGCTCTCTCAAGTTTATCCTTCCTAGATTACAAAAGGAAGGATAAA  500

seq1  CTTAAGAGAACAATTTCTTTTTTCTATTAAACATATATTTAAAATAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAGAGAACAATTTCTTTTTTCTATTAAACATATATTTAAAATAATTT  550

seq1  TAATTAACATATATTTATATGTTATATAAAATATATGTTACAAAAAGAAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTAACATATATTTATATGTTATATAAAATATATGTTACAAAAAGAAT  600

seq1  AATATAATGTAATTATACAATTATTATATATAATTTTTTAATTGTAAGGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATAATGTAATTATACAATTATTATATATAATTTTTTAATTGTAAGGC  650

seq1  TGATGTATCTCAGTTACACAATTTTATTTTTTTATTTTCTCAATCATAAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTATCTCAGTTACACAATTTTATTTTTTTATTTTCTCAATCATAAG  700

seq1  ATACATATGCTCTGAAGGAGTCGCCATTGAGATGCGGATGAAGAAGGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACATATGCTCTGAAGGAGTCGCCATTGAGATGCGGATGAAGAAGGAGG  750

seq1  CCAGGAGAAGACCAAGATGGCAGGGATACAAACGTGGTTGATATAAGTGG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGAGAAGACCAAGATGGCAGGGATACAAACGTGGTTGATATAAGTGG  800

seq1  TCTGTATACAGAGTCTGCTAATGGAAAAGATACTTTGGAAGGTGCTGGAG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTATACAGAGTCTGCTAATGGAAAAGATACTTTGGAAGGTGCTGGAG  850

seq1  ACACTTCAGAAGTGATGGATACCTAGGCAGGCTCTGTGGATGAGGAGAAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTTCAGAAGTGATGGATACCTAGGCAGGCTCTGTGGATGAGGAGAAT  900

seq1  GGGTGGCAGTTGGGAGAAGTCAAGTTGCAATGCAGAATATGTGCAAAGTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGCAGTTGGGAGAAGTCAAGTTGCAATGCAGAATATGTGCAAAGTG  950

seq1  TTTCATCGCTCTCACCTTTGGAAT-AGA--CACATCGTCATGTCTGCCTT  997
      |||||||||||||| ||| ||||| |||   |||||||||||||||||||
seq2  TTTCATCGCTCTCA-CTTGGGAATAAGAACAACATCGTCATGTCTGCCTT  999

seq1  TTATGACCAACTACATCTTCCACTGAAATGTATGCCATCACA--GTGGGA  1045
      |||||| |||||||||||| |||||||||||||| |||||||  ||||||
seq2  TTATGA-CAACTACATCTT-CACTGAAATGTATG-CATCACAAGGTGGGA  1046

seq1  ATACCTGCTTTCTCCGGAAGCCAGCAAATTTAAAAGTAATGAGCCTTAGT  1095
      ||||   |||||||  | |||   ||||||  ||||||||||||||    
seq2  ATACTGCCTTTCTC--GGAGCAGCCAAATT--AAAGTAATGAGCCT----  1088

seq1  GTTTTGGCGAACTTGACGAGGTAGTCTCGAAGACA-GGAT-GAACATCCA  1143
        ||| |||||| ||||   |||| |||||||| | |||| |||||||  
seq2  -CTTTTGCGAAC-TGAC--AGTAG-CTCGAAGAAACGGATGGAACATC--  1131

seq1  AAAACCATGTTCTCCAAAGATA  1165
       ||| |||||||| | ||||||
seq2  -AAATCATGTTCT-CGAAGATA  1151


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