BAC Information

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BAC

Clone NameB6Ng01-316O20
Chromosome2 (Build37)
Map Location 104,821,878 - 104,964,328
singlet/doubletdoublet
Overlap geneCcdc73, Ga17, 2210415I11Rik, LOC622356
Upstream geneLmo2, Fbxo3, Cd59b, Cd59a, A930018P22Rik, D430041D05Rik, LOC100043349, Hipk3, LOC383735, LOC668733, Cstf3, Tcp11l1, EG622282, OTTMUSG00000014964, Depdc7, Qser1, LOC100042995, 2310047K21Rik, LOC668744, Prrg4
Downstream geneWt1, 0610012H03Rik, Rcn1, Pax6os1, LOC100043391, Pax6, Elp4, LOC100043394, Immp1l, LOC100043402, Dph4, LOC668765
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-316O20.bB6Ng01-316O20.g
ACCGA107201GA107202
length3581,104
definitionB6Ng01-316O20.b B6Ng01-316O20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(104,821,878 - 104,822,241)(104,963,214 - 104,964,328)
sequence
aaactgttgtatctcaagccatagataaagaaggctttattcactcttca
ataaaagaattaacacctaaaaaaaaggctgcctggccctgctgcagcct
ggaacacaggttcagacagaggtgctgggccccatgtcaagttgctccat
gaaaatgagaagtgtagctcctcccactcctttttgatgacatttacaaa
agaaggcaagctgcttggaaggtctggacatgagggaaggggcatggaga
caaggctagtggtggggagtgctagaggctcgggttaccctgtccccctg
gatgggaccccattttttctcctcaaagggcccctaggttttccccatct
cctatcct
gaattccagaagctgcctgcgctcagttggaggactcctggtcagactgg
acgctcctgagattcccctttgcccaactatgtctagaagtccaagcggc
aggaagccagtgctctgggacccgcaaaccttggggtcacagaatacccc
atccctttctcctctggttaccccagcagacgccttgctacactgacttg
ggtgccctgagctgactgtgagagctactgacagcctgcccagggggtgt
tgcacttgccgcccaccctaaacccccctcctttgaggcctgcccgggtt
ccagaaaaacgaaggtcacggcgaactaggtgcttcctactcttccgttt
tctccaccacgttggtgcagcctcgggcctcagaaaggataacgttccaa
actgtctgtctgcaggcaaagcctgctattaaactcaagccagcagggga
aactgagacccaactgagataggaaaagcaaatggtacagcagtagttaa
aagcaaggtggattgaaaatgagatctcaccttcacttggcaaccaacag
ctgtatgactcctgaagagttttagcagtgtttttgagcctcagttttca
cattggagaaaatatgacagtagcgttctaccttcggggttgtagattaa
tcccataggaaggtagtgatctgtttacagcaaaaccactcgattttgat
actattatttgaaagatttttgccgagctcaacaaaaccccacaactttc
aacgtccaattcgttctggaatggtttaaaccaccgtctctgcttcttta
gtactgatggaatttggaagaaaagagacactggcagtctaggtggcttc
aatacgtgtcttagaaaggcgcataattattacaagatgaaaaccatcac
atctagacggaagggggagcgaagatctcaaccccggtcttttcatcccg
gggctgtcacttcatctggctgagcacagcctggagctacaagcgtgccc
agggacggcgcgcacggcaggtccgcgctctggcggttcaccccgagctg
ttgacatgaataacacgctgtagctgccaatttgtcagtgctgagcgcag
tctg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_104821878_104822241
seq2: B6Ng01-316O20.b_52_415

seq1  GAATTCAAACTGTTGTATCTCAAGCCATAGAGAAAGCATGGCTTTATTCA  50
      ||||||||||||||||||||||||||||||| |||| | |||||||||||
seq2  GAATTCAAACTGTTGTATCTCAAGCCATAGATAAAG-AAGGCTTTATTCA  49

seq1  CTCTTCAATAAAAGAATTAACACCTCAAAGAAAAGGCTGCCTGGCCCTGC  100
      ||||||||||||||||||||||||| ||| ||||||||||||||||||||
seq2  CTCTTCAATAAAAGAATTAACACCT-AAAAAAAAGGCTGCCTGGCCCTGC  98

seq1  TGCAGCCTGGAACACAGGTTCAGACAGAGGTGCTGGGCCCCATGTCAAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAGCCTGGAACACAGGTTCAGACAGAGGTGCTGGGCCCCATGTCAAGT  148

seq1  TGCTCAATG--TTTTTGTTCTGTAGCTCCTCCCACTCCTTTTTGATGACA  198
      ||||| |||    |  |   ||||||||||||||||||||||||||||||
seq2  TGCTCCATGAAAATGAGAAGTGTAGCTCCTCCCACTCCTTTTTGATGACA  198

seq1  TTTACAAAAGAAGGCAAGCTGCTTGGAAGGTCTGGACATGAGGGAAGGGG  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAAAAGAAGGCAAGCTGCTTGGAAGGTCTGGACATGAGGGAAGGGG  248

seq1  CATGGAGACAAGGCTAGTGGTGGGGAGTGCTAGAGGCTCGGGTTACCCTG  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGGAGACAAGGCTAGTGGTGGGGAGTGCTAGAGGCTCGGGTTACCCTG  298

seq1  TCCCCCTGGATGGGACCCCAGAGTATCTCCTCAAAGGGCCCCTAGGTTTT  348
      ||||||||||||||||||||   | |||||||||||||||||||||||||
seq2  TCCCCCTGGATGGGACCCCATTTTTTCTCCTCAAAGGGCCCCTAGGTTTT  348

seq1  CCCCAGCTCCCATCCT  364
      ||||| |||| |||||
seq2  CCCCATCTCCTATCCT  364

seq1: chr2_104963214_104964328
seq2: B6Ng01-316O20.g_70_1173 (reverse)

seq1  CAGACTGGCGGCCTCAGCCACTGACAGATCGCAAGGCTACAGCGTGTTTA  50
      |||||| |||  ||||| |||||||| || |  | ||||||||||| |||
seq2  CAGACT-GCG--CTCAG-CACTGACAAATTGGCA-GCTACAGCGTG-TTA  44

seq1  TTCAATTGTCAACAGCCTCGGGGTGACCCGCCAGAGCGCGGCCCTGGCGT  100
      ||||  ||||||||| |||||||||| |||||||||||||| |||| |||
seq2  TTCA--TGTCAACAG-CTCGGGGTGAACCGCCAGAGCGCGGACCTGCCGT  91

seq1  GCGCGCCGGTCCCTGGGGCCACGGCTGTAGCCTCCAGGCTGTGCTCAGCC  150
      ||||||| |||||||||  ||||  ||||| |||||||||||||||||||
seq2  GCGCGCC-GTCCCTGGG--CACGCTTGTAG-CTCCAGGCTGTGCTCAGCC  137

seq1  AGATGAAGTTGACAGCCCCGGGATG-AAAGACC-GGGTTGAGATCTTCGC  198
      |||||||| |||||||||||||||| ||||||| ||||||||||||||||
seq2  AGATGAAG-TGACAGCCCCGGGATGAAAAGACCGGGGTTGAGATCTTCGC  186

seq1  TCCCCCTTCCGTCTAGATGTGATGGTTTTCATCTTGTAATAATTATGCGC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCTTCCGTCTAGATGTGATGGTTTTCATCTTGTAATAATTATGCGC  236

seq1  C-TTCTAAGACACGTATTGAAGCCACCTAGACTGCCAGTGTCTCTTTTCT  297
      | ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTAAGACACGTATTGAAGCCACCTAGACTGCCAGTGTCTCTTTTCT  286

seq1  TCCAAATTCCATCAGTACTAAAGAAGCAGAGACGGTGGTTTAAACCATTC  347
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAATTCCATCAGTACTAAAGAAGCAGAGACGGTGGTTTAAACCATTC  336

seq1  CAGAACGAATTGGACGTTGAAAGTTGTGGGGTTTTGTTGAGCTCGGCAAA  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAACGAATTGGACGTTGAAAGTTGTGGGGTTTTGTTGAGCTCGGCAAA  386

seq1  AATCTTTCAAATAATAGTATCAAAATCGAGTGGTTTTGCTGTAAACAGAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTTTCAAATAATAGTATCAAAATCGAGTGGTTTTGCTGTAAACAGAT  436

seq1  CACTACCTTCCTATGGGATTAATCTACAACCCCGAAGGTAGAACGCTACT  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTACCTTCCTATGGGATTAATCTACAACCCCGAAGGTAGAACGCTACT  486

seq1  GTCATATTTTCTCCAATGTGAAAACTGAGGCTCAAAAACACTGCTAAAAC  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCATATTTTCTCCAATGTGAAAACTGAGGCTCAAAAACACTGCTAAAAC  536

seq1  TCTTCAGGAGTCATACAGCTGTTGGTTGCCAAGTGAAGGTGAGATCTCAT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCAGGAGTCATACAGCTGTTGGTTGCCAAGTGAAGGTGAGATCTCAT  586

seq1  TTTCAATCCACCTTGCTTTTAACTACTGCTGTACCATTTGCTTTTCCTAT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATCCACCTTGCTTTTAACTACTGCTGTACCATTTGCTTTTCCTAT  636

seq1  CTCAGTTGGGTCTCAGTTTCCCCTGCTGGCTTGAGTTTAATAGCAGGCTT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAGTTGGGTCTCAGTTTCCCCTGCTGGCTTGAGTTTAATAGCAGGCTT  686

seq1  TGCCTGCAGACAGACAGTTTGGAACGTTATCCTTTCTGAGGCCCGAGGCT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTGCAGACAGACAGTTTGGAACGTTATCCTTTCTGAGGCCCGAGGCT  736

seq1  GCACCAACGTGGTGGAGAAAACGGAAGAGTAGGAAGCACCTAGTTCGCCG  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACCAACGTGGTGGAGAAAACGGAAGAGTAGGAAGCACCTAGTTCGCCG  786

seq1  TGACCTTCGTTTTTCTGGAACCCGGGCAGGCCTCAAAGGAGGGGGGTTTA  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACCTTCGTTTTTCTGGAACCCGGGCAGGCCTCAAAGGAGGGGGGTTTA  836

seq1  GGGTGGGCGGCAAGTGCAACACCCCCTGGGCAGGCTGTCAGTAGCTCTCA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGGGCGGCAAGTGCAACACCCCCTGGGCAGGCTGTCAGTAGCTCTCA  886

seq1  CAGTCAGCTCAGGGCACCCAAGTCAGTGTAGCAAGGCGTCTGCTGGGGTA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTCAGCTCAGGGCACCCAAGTCAGTGTAGCAAGGCGTCTGCTGGGGTA  936

seq1  ACCAGAGGAGAAAGGGATGGGGTATTCTGTGACCCCAAGGTTTGCGGGTC  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGAGGAGAAAGGGATGGGGTATTCTGTGACCCCAAGGTTTGCGGGTC  986

seq1  CCAGAGCACTGGCTTCCTGCCGCTTGGACTTCTAGACATAGTTGGGCAAA  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAGCACTGGCTTCCTGCCGCTTGGACTTCTAGACATAGTTGGGCAAA  1036

seq1  GGGGAATCTCAGGAGCGTCCAGTCTGACCAGGAGTCCTCCAACTGAGCGC  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAATCTCAGGAGCGTCCAGTCTGACCAGGAGTCCTCCAACTGAGCGC  1086

seq1  AGGCAGCTTCTGGAATTC  1115
      ||||||||||||||||||
seq2  AGGCAGCTTCTGGAATTC  1104