BAC Information

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BAC

Clone NameB6Ng01-318G22
Chromosome10 (Build37)2 (Build37)
Map Location 6,131,647 - 6,132,326145,663,345 - 145,664,330
singlet/doubletsingletsinglet
Overlap genenone
Upstream geneSyne1, Esr1, LOC100041310, Gm221, 1700052N19Rik, Rmnd1, Zbtb2, Akap12
Downstream geneMthfd1l, Plekhg1, Iyd, Ppp1r14c, EG666520, LOC100039303, LOC670558, LOC626333
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318G22.bB6Ng01-318G22.g
ACCGA108322GA108323
length788992
definitionB6Ng01-318G22.b B6Ng01-318G22.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(6,131,647 - 6,132,326)(145,663,345 - 145,664,330)
sequence
gaattcatgtttgctaattattatttttaaagaggttctacatttttaaa
tttactgtagtaaatattacgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
gtgtggggaaattaaggtgccaacaattgaattatatagacaaacactca
aatcacaaaactccctctgtaagtgccgaaggtgatttagaacacttaag
aggaagccaggcatagtggcacatgccagtaatcccaacactcaggaggt
agaggcaggaggatgagttcaaggccagtttttgttacatagtaaattaa
gggcaaacaataagctacattttttaggctgggagccctgttcgcccctg
cacaagctgggaaaccccgtctactcttcttccctcaactctgcccacaa
gggagaaaactctcctgcccacaggaagcctccagctaacgcagcatcac
tccgtgcctctgcatttccggcaacccacccaagagtgcctgccaagggg
ctcaggttttgacgatatagtgacacaatcccagctcctagctaaggggt
tatcactcctcacctaaactctataagaccccttcctttatcctgtgtat
gtaactccattgaccttctcctcctcctgtgagattagtgaacccaacaa
gagctggctttctaataaacctgcctttgtatttttttttccatttttta
ttaggtattttagctcatttacatttccaatgctataccaaaagtccccc
atatccagccaaccccactcctcgtatctcacccactc
gaattccatcgaggagctgtcaatcaaatgttttacgtttattttgtcca
catgtatgtgtgttgggggcggggcatgggagtgcttgtgccgtgatgca
cacatgtagaggacgctgttaggagtctcacctcctgtcttgctgagtga
ggggctctcttgtttttgctgtggtactgaaaactccagggtagatagtc
ggccttttgagagattctgtgttgggagagcttcctgtcttggcctccca
tttcactctagggatgctggggttactcatgtgcacgttacccaggttcc
agagaatggaacttaggtttttgtttttgtttttttcagagacagggttt
ctctgtgtagccttggctgtcctggaactcactctgtagaccaggctggc
ctggaactcagagatctgcctgcctcggcctcccaagtgctgggattaaa
ggcgtgcaccaccaccgcccggaggaacttaggttttaaggcttctgtgg
acactgcttttactagctgagtcagctctctggcctgcagtgtttaattt
aaagacaaacacacaacaaagctttcatccttaaaagaaaaatgagacac
ataggcacaaagtcctagttgctcaagtcaatatagatgtttcttacaca
caaagagaaggtctagagatcctttttgttttattttttttttaagctta
ctgtgttttgttctgacaaagggaagacaaaattaaaatttagtttaaag
gtgttaactgggatggagcaacatatcattccatgaaacagaatgagagt
agccgtgagctcgaagagacgggaaggttgttttatagccacaaaggttt
tccaagtaactttcccagtaaggtgagaagaggaagagagtaatcaagga
atacaggaaaggtctcagggaggctgcctaaactcagacacctcaggagg
taggggcttgaggaatgaaggtaggaggattacaagtttgaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr10_6131647_6132326
seq2: B6Ng01-318G22.b_148_832 (reverse)

seq1  GAGTGGGTG-GGTA-GGGGAGTGGGGGTGGGTGGGTATGGGGGACTTTTG  48
      ||||||||| | || | ||||||||| ||| ||| |||||||||||||||
seq2  GAGTGGGTGAGATACGAGGAGTGGGGTTGGCTGGATATGGGGGACTTTTG  50

seq1  GTATAGCATTGGAAATGTAAATGAGCT-AAATACCTAATAAAAAATGG-A  96
      ||||||||||||||||||||||||||| |||||||||||||||||||| |
seq2  GTATAGCATTGGAAATGTAAATGAGCTAAAATACCTAATAAAAAATGGAA  100

seq1  AAAAAAATACAAAGGCAGGTTTATTAG-AAGCCAGCTCTTGTTGGGTTCA  145
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  AAAAAAATACAAAGGCAGGTTTATTAGAAAGCCAGCTCTTGTTGGGTTCA  150

seq1  CTAATCTCACAGGAGGAGGAGAAGGTCAATGGAGTTACATACACAGGATA  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAATCTCACAGGAGGAGGAGAAGGTCAATGGAGTTACATACACAGGATA  200

seq1  AAGGAAGGGGTCTTATAGAGTTTAGGTGAGGAGTGATAACCCCTTAGCTA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGAAGGGGTCTTATAGAGTTTAGGTGAGGAGTGATAACCCCTTAGCTA  250

seq1  GGAGCTGGGATTGTGTCACTATATCGTCAAAACCTGAGCCCCTTGGCAGG  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGGGATTGTGTCACTATATCGTCAAAACCTGAGCCCCTTGGCAGG  300

seq1  CACTCTTGGGTGGGTTGCCGGAAATGCAGAGGCACGGAGTGATGCTGCGT  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTTGGGTGGGTTGCCGGAAATGCAGAGGCACGGAGTGATGCTGCGT  350

seq1  TAGCTGGAGGCTTCCTGTGGGCAGGAGAGTTTTCTCCCTTGTGGGCAGAG  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCTGGAGGCTTCCTGTGGGCAGGAGAGTTTTCTCCCTTGTGGGCAGAG  400

seq1  TTGAGGGAAGAAGAGTAGACGGGGTTTCCCAGCTTGTGCAGGGGCGAACA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAGGGAAGAAGAGTAGACGGGGTTTCCCAGCTTGTGCAGGGGCGAACA  450

seq1  GGGCTCCCAGCCTAAAAAATGTAGCTTATTGTTTGCCCTTAATTTACTAT  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCTCCCAGCCTAAAAAATGTAGCTTATTGTTTGCCCTTAATTTACTAT  500

seq1  GTAACAAAAACTGGCCTTGAACTCATCCTCCTGCCTCTACCTCCTGAGTG  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACAAAAACTGGCCTTGAACTCATCCTCCTGCCTCTACCTCCTGAGTG  550

seq1  TTGGGATTACTGGCATGTGCCACTATGCCTGGCTTCCTCTTAAGTGTTCT  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGATTACTGGCATGTGCCACTATGCCTGGCTTCCTCTTAAGTGTTCT  600

seq1  AAATCACCTTCGGCACTTACAGAGGGAGTTTTGTGATTTGAGTGTTTGTC  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCACCTTCGGCACTTACAGAGGGAGTTTTGTGATTTGAGTGTTTGTC  650

seq1  TATATAATTCAATTGTTGGCACCTTAATTCCCCCA  680
      ||||||||||||||||||||||||||||| |||||
seq2  TATATAATTCAATTGTTGGCACCTTAATTTCCCCA  685

seq1: chr2_145663345_145664330
seq2: B6Ng01-318G22.g_64_1055

seq1  GAATTCCATCGAGGAGCTGTCAATCAAATGTTTTACGTTTATTTTGTCCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCATCGAGGAGCTGTCAATCAAATGTTTTACGTTTATTTTGTCCA  50

seq1  CATGTATGTGTGTTGGGGGCGGGGCATGGGAGTGCTTGTGCCGTGATGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTATGTGTGTTGGGGGCGGGGCATGGGAGTGCTTGTGCCGTGATGCA  100

seq1  CACATGTAGAGGACGCTGTTAGGAGTCTCACCTCCTGTCTTGCTGAGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATGTAGAGGACGCTGTTAGGAGTCTCACCTCCTGTCTTGCTGAGTGA  150

seq1  GGGGCTCTCTTGTTTTTGCTGTGGTACTGAAAACTCCAGGGTAGATAGTC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCTCTCTTGTTTTTGCTGTGGTACTGAAAACTCCAGGGTAGATAGTC  200

seq1  GGCCTTTTGAGAGATTCTGTGTTGGGAGAGCTTCCTGTCTTGGCCTCCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCTTTTGAGAGATTCTGTGTTGGGAGAGCTTCCTGTCTTGGCCTCCCA  250

seq1  TTTCACTCTAGGGATGCTGGGGTTACTCATGTGCACGTTACCCAGGTTCC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCACTCTAGGGATGCTGGGGTTACTCATGTGCACGTTACCCAGGTTCC  300

seq1  AGAGAATGGAACTTAGGTTTTTGTTTTTGTTTTTTTCAGAGACAGGGTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAATGGAACTTAGGTTTTTGTTTTTGTTTTTTTCAGAGACAGGGTTT  350

seq1  CTCTGTGTAGCCTTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTGTGTAGCCTTGGCTGTCCTGGAACTCACTCTGTAGACCAGGCTGGC  400

seq1  CTGGAACTCAGAGATCTGCCTGCCTCGGCCTCCCAAGTGCTGGGATTAAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAACTCAGAGATCTGCCTGCCTCGGCCTCCCAAGTGCTGGGATTAAA  450

seq1  GGCGTGCACCACCACCGCCCGGAGGAACTTAGGTTTTAAGGCTTCTGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCGTGCACCACCACCGCCCGGAGGAACTTAGGTTTTAAGGCTTCTGTGG  500

seq1  ACACTGCTTTTACTAGCTGAGTCAGCTCTCTGGCCTGCAGTGTTTAATTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACACTGCTTTTACTAGCTGAGTCAGCTCTCTGGCCTGCAGTGTTTAATTT  550

seq1  AAAGACAAACACACAACAAAGCTTTCATCCTTAAAAGAAAAATGAGACAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACAAACACACAACAAAGCTTTCATCCTTAAAAGAAAAATGAGACAC  600

seq1  ATAGGCACAAAGTCCTAGTTGCTCAAGTCAATATAGATGTTTCTTACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGGCACAAAGTCCTAGTTGCTCAAGTCAATATAGATGTTTCTTACACA  650

seq1  CAAAGAGAAGGTCTAGAGATCCTTTTTGTTTTATTTTTTTTTTAAGCTTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAGAAGGTCTAGAGATCCTTTTTGTTTTATTTTTTTTTTAAGCTTA  700

seq1  CTGTGTTTTGTTCTGACAAAGGGAAGACAAAATTAAAATTTAGTTTAAAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTGTTTTGTTCTGACAAAGGGAAGACAAAATTAAAATTTAGTTTAAAG  750

seq1  GTGTTAACTGGGATGGAGCAACATATCATTCCATGAAACAGAATGAGAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTTAACTGGGATGGAGCAACATATCATTCCATGAAACAGAATGAGAGT  800

seq1  AGCCGTGAGC-CGAAGAGACGGG-AGGTTGTTTTATAGCCACAAAGG-TT  847
      |||||||||| |||||||||||| ||||||||||||||||||||||| ||
seq2  AGCCGTGAGCTCGAAGAGACGGGAAGGTTGTTTTATAGCCACAAAGGTTT  850

seq1  TCCAAGTAACTTTCCCAGTAAGGTGAGAAGAGGAAGAGAGTAATCAAGGA  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAAGTAACTTTCCCAGTAAGGTGAGAAGAGGAAGAGAGTAATCAAGGA  900

seq1  ATACAGG-AAGGTCTCA-GGAGGCTGCCT-AACCCAGACAACCCAGGAGG  944
      ||||||| ||||||||| ||||||||||| ||| |||||| | |||||||
seq2  ATACAGGAAAGGTCTCAGGGAGGCTGCCTAAACTCAGACACCTCAGGAGG  950

seq1  TAGGGGCTTGAGGAATGGAGGTAGGAGGATTACAAGTTTGAA  986
      ||||||||||||||||| ||||||||||||||||||||||||
seq2  TAGGGGCTTGAGGAATGAAGGTAGGAGGATTACAAGTTTGAA  992