BAC Information

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BAC

Clone NameB6Ng01-318L06
Chromosome2 (Build37)
Map Location 56,426,395 - 56,523,596
singlet/doubletdoublet
Overlap genenone
Upstream geneKcnj3
Downstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2, LOC271788
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-318L06.bB6Ng01-318L06.g
ACCGA108522GA108523
length1,1451,054
definitionB6Ng01-318L06.b B6Ng01-318L06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,426,395 - 56,427,532)(56,522,536 - 56,523,596)
sequence
gaattctctaggatgatcaatgctatgttgtgaatactatgcagcagtta
ctagaagacagattattttaagaacactctcagtttccttgatagaattt
aaatcaaatgacatcaagctgtagtactcaaactgatttaagcaatcagt
tcttaaaatattcccagtatgaactagatcgtctgctagaaagtccctat
gaaaggaaaacaattccatgaggactgtgagtctatgctgctggaggaaa
gtagaaatatcaatcaccaaggctgtttttcaaagagtcttaaatttctg
gcatcagtggggccagacagaaatgaaaaagcttaccctagtgggtaaca
ccaccttctgaaataaggcattcatagaattgaaaaggttgcttacagat
acgagttgaactagctcttcatagttgtacttcactttagcaaaattcaa
gttaatattaaaatatttagaattggctcaattgctgcctttcctttaaa
aacatccttatctttgtaacctaagcctacagtaggagaacacaagtttt
cagagacactgcatttttacatagcatcttgagtgttcgcactcccacag
aggccgtcagacctgctaaatggcatagccaaatttctctggaatctttt
tataatacaatgatgcataagtgtaagtcaacgtagcatttgactcttca
aatgccacactaaaaagtccttaaaatatacaactcactccattggatga
atccaagccagttctgtcagagtatctgtaactttgcctgtcctttgcat
attgtaacctagtgtgttcaacttccacaccattctcactgaaacaaaac
ctcaagtgagattcttttacctttgtgatttacctgttcacatcatgagc
ttagccaggactaagtgaaaataagtcttatgaactgtatatctttgtaa
atgtgaatagtgtatatccctctggcttttattcccaaagttgtgcattt
tctagactgagaatttataccttaattgaaatggattacaagtatatcct
cctctatggaaaaacaatgacatggtcttgggccatggtgccataccttc
catcagccacccaggatcagccgatgaagcctagcctgtatgatt

gaattcctcccacaatggcccattaatctttctttacagaattcaacttc
ttttctagtccacattcctccaaaaaaaaaaaaacaatattttcaggttg
ttcatggctatagcctattctctggtactcatttcaattagttacatgtc
tgttgttctgattaaacaacaaactgagacagcttatagaaagaagagtt
tatttgacaatagctccaaaggggaagtacttaatggcagtgaatatgtg
acagcagtcaactggagcaggaagctaagaaatcatatcttcagattcaa
acccacactcagagcaatgtggaagtgagtgaaatcatacactttcaaag
tccaccctagtaaactacttcctccagcaagactccatttcccaaatgtt
ctacaacctccccaaagaacattgccaactggaaccatgcactcaaatac
ctgagactacaagagcattgctcatttgaatcaccataaatgtcgatcag
atatactgttgatgttctggagtattttaatacttgcgatgatatatatc
ccaaaacaatacatgagataggaaaacagaaatagtgaagttcctttcaa
atgctcaatatctctgtgctgcggtttatagaatgttctcatcttcaata
gcaaagtcaaaaaattatgtgaattcaatttaactttgaaataacatatc
aaaaataaaggaaaaattttcagaaatagaaagcaactttggataaactt
aatgatttatggcgtttcttgcttgaaaataagtgaacatcttcagctat
ttggaaagcatcttcttttgtgcatttgtggggtctgccctccttaggta
tatcactatgcagatcagtgggtgggattccagactctaggacaaagtgc
tcaatgatttttttctcaacctcagttcccttgcagatagatagaattac
tatagaaattttcataacttcataatgtgatccactaatatgtgattcat
tggtttgcgctagcccatcatttgttatcttatcggatctgctgtggcga
tgcc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_56426395_56427532
seq2: B6Ng01-318L06.b_49_1193

seq1  GAATTCTCTAGGATGATCAATGCTATGTTGTGAATACTATGCAGCAGTTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCTAGGATGATCAATGCTATGTTGTGAATACTATGCAGCAGTTA  50

seq1  CTAGAAGACAGATTATTTTAAGAACACTCTCAGTTTCCTTGATAGAATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGACAGATTATTTTAAGAACACTCTCAGTTTCCTTGATAGAATTT  100

seq1  AAATCAAATGACATCAAGCTGTAGTACTCAAACTGATTTAAGCAATCAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCAAATGACATCAAGCTGTAGTACTCAAACTGATTTAAGCAATCAGT  150

seq1  TCTTAAAATATTCCCAGTATGAACTAGATCGTCTGCTAGAAAGTCCCTAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTAAAATATTCCCAGTATGAACTAGATCGTCTGCTAGAAAGTCCCTAT  200

seq1  GAAAGGAAAACAATTCCATGAGGACTGTGAGTCTATGCTGCTGGAGGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAGGAAAACAATTCCATGAGGACTGTGAGTCTATGCTGCTGGAGGAAA  250

seq1  GTAGAAATATCAATCACCAAGGCTGTTTTTCAAAGAGTCTTAAATTTCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAAATATCAATCACCAAGGCTGTTTTTCAAAGAGTCTTAAATTTCTG  300

seq1  GCATCAGTGGGGCCAGACAGAAATGAAAAAGCTTACCCTAGTGGGTAACA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATCAGTGGGGCCAGACAGAAATGAAAAAGCTTACCCTAGTGGGTAACA  350

seq1  CCACCTTCTGAAATAAGGCATTCATAGAATTGAAAAGGTTGCTTACAGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACCTTCTGAAATAAGGCATTCATAGAATTGAAAAGGTTGCTTACAGAT  400

seq1  ACGAGTTGAACTAGCTCTTCATAGTTGTACTTCACTTTAGCAAAATTCAA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGAGTTGAACTAGCTCTTCATAGTTGTACTTCACTTTAGCAAAATTCAA  450

seq1  GTTAATATTAAAATATTTAGAATTGGCTCAATTGCTGCCTTTCCTTTAAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATATTAAAATATTTAGAATTGGCTCAATTGCTGCCTTTCCTTTAAA  500

seq1  AACATCCTTATCTTTGTAACCTAAGCCTACAGTAGGAGAACACAAGTTTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATCCTTATCTTTGTAACCTAAGCCTACAGTAGGAGAACACAAGTTTT  550

seq1  CAGAGACACTGCATTTTTACATAGCATCTTGAGTGTTCGCACTCCCACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGACACTGCATTTTTACATAGCATCTTGAGTGTTCGCACTCCCACAG  600

seq1  AGGCCGTCAGACCTGCTAAATGGCATAGCCAAATTTCTCTGGAATCTTTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCGTCAGACCTGCTAAATGGCATAGCCAAATTTCTCTGGAATCTTTT  650

seq1  TATAATACAATGATGCATAAGTGTAAGTCAACGTAGCATTTGACTCTTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAATACAATGATGCATAAGTGTAAGTCAACGTAGCATTTGACTCTTCA  700

seq1  AATGCCACACTAAAAAGTCCTTAAAATATACAACTCACTCCATTGGATGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCCACACTAAAAAGTCCTTAAAATATACAACTCACTCCATTGGATGA  750

seq1  ATCCAAGCCAGTTCTGTCAGAGTATCTGTAACTTTGCCTGTCCTTTGCAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCAAGCCAGTTCTGTCAGAGTATCTGTAACTTTGCCTGTCCTTTGCAT  800

seq1  ATTGTAACCTAGTGTGTTCAACTTCCACACCATTCTCACTGAAACAAAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTAACCTAGTGTGTTCAACTTCCACACCATTCTCACTGAAACAAAAC  850

seq1  CTCAAGTGAGAATTCTTTACCTTTGTGATTTACCTGTTCACATCATGAGC  900
      ||||||||||| |  |||||||||||||||||||||||||||||||||||
seq2  CTCAAGTGAGATTCTTTTACCTTTGTGATTTACCTGTTCACATCATGAGC  900

seq1  TTAGCCAGGACTAAGTGAAAATAAGTC-TATGAAACTGTATATCTTTGTA  949
      ||||||||||||||||||||||||||| |||| |||||||||||||||||
seq2  TTAGCCAGGACTAAGTGAAAATAAGTCTTATG-AACTGTATATCTTTGTA  949

seq1  AATGTGAATAGTGTATAT-CCTCTGGC-TTTATT-CCAAAG-TGTGCATT  995
      |||||||||||||||||| |||||||| |||||| |||||| ||||||||
seq2  AATGTGAATAGTGTATATCCCTCTGGCTTTTATTCCCAAAGTTGTGCATT  999

seq1  TCTAAGACTGAGAATTAATA-CTTAA-TGAA--TGATTACAAATATATC-  1040
      |   |||||||||||| ||| ||||| ||||   |||||||| |||||| 
seq2  TTCTAGACTGAGAATTTATACCTTAATTGAAATGGATTACAAGTATATCC  1049

seq1  -TCTCTATGAAAAACAAAATGACAGGGGTCTTGG--CATGGTGCCATACC  1087
        ||||||| |||| | |||||||  ||||||||  ||||||||||||||
seq2  TCCTCTATGGAAAA-ACAATGACA-TGGTCTTGGGCCATGGTGCCATACC  1097

seq1  TTTCATTCCAG-CACCCAGGAGACAAAAGCGAATAGAG-CTAG-CTGTAT  1134
      || |||  ||| ||||||||    |  |||  ||  || |||| ||||||
seq2  TTCCAT--CAGCCACCCAGG----ATCAGCCGATGAAGCCTAGCCTGTAT  1141

seq1  GATT  1138
      ||||
seq2  GATT  1145


seq1: chr2_56522536_56523596
seq2: B6Ng01-318L06.g_69_1122 (reverse)

seq1  GGCATCGCCAACAGCAAGAATCCCGAATAAGATAACAAATGATTGGCTAG  50
      ||||||||| ||||||   ||||   ||||||||||||||||| ||||||
seq2  GGCATCGCC-ACAGCA--GATCC--GATAAGATAACAAATGATGGGCTAG  45

seq1  CCGCAAACCAATGAATCACATATTAGTTGGATCACATTATGAAGTTATGA  100
       ||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  -CGCAAACCAATGAATCACATATTAG-TGGATCACATTATGAAGTTATGA  93

seq1  AAATTTCTATAGTAATTCTATCTATCTGCAAGGAAACTGAGGTTGAGAAA  150
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  AAATTTCTATAGTAATTCTATCTATCTGCAAGGGAACTGAGGTTGAGAAA  143

seq1  AAAATCATTGAGCACTTTGTCCTAGAGTCTGGAATCCCACCCACTGATCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATCATTGAGCACTTTGTCCTAGAGTCTGGAATCCCACCCACTGATCT  193

seq1  GCATAGTGATATACCTAAGGAGGGCAGACCCCACAAATGCACAAAAGAAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCATAGTGATATACCTAAGGAGGGCAGACCCCACAAATGCACAAAAGAAG  243

seq1  ATGCTTTCCAAATAGCTGAAGATGTTCACTTATTTTCAAGCAAGAAACGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTTTCCAAATAGCTGAAGATGTTCACTTATTTTCAAGCAAGAAACGC  293

seq1  CATAAATCATTAAGTTTATCCAAAGTTGCTTTCTATTTCTGAAAATTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAAATCATTAAGTTTATCCAAAGTTGCTTTCTATTTCTGAAAATTTTT  343

seq1  CCTTTATTTTTGATATGTTATTTCAAAGTTAAATTGAATTCACATAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATTTTTGATATGTTATTTCAAAGTTAAATTGAATTCACATAATTT  393

seq1  TTTGACTTTGCTATTGAAGATGAGAACATTCTATAAACCGCAGCACAGAG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGACTTTGCTATTGAAGATGAGAACATTCTATAAACCGCAGCACAGAG  443

seq1  ATATTGAGCATTTGAAAGGAACTTCACTATTTCTGTTTTCCTATCTCATG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTGAGCATTTGAAAGGAACTTCACTATTTCTGTTTTCCTATCTCATG  493

seq1  TATTGTTTTGGGATATATATCATCGCAAGTATTAAAATACTCCAGAACAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTGTTTTGGGATATATATCATCGCAAGTATTAAAATACTCCAGAACAT  543

seq1  CAACAGTATATCTGATCGACATTTATGGTGATTCAAATGAGCAATGCTCT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACAGTATATCTGATCGACATTTATGGTGATTCAAATGAGCAATGCTCT  593

seq1  TGTAGTCTCAGGTATTTGAGTGCATGGTTCCAGTTGGCAATGTTCTTTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGTCTCAGGTATTTGAGTGCATGGTTCCAGTTGGCAATGTTCTTTGG  643

seq1  GGAGGTTGTAGAACATTTGGGAAATGGAGTCTTGCTGGAGGAAGTAGTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGTTGTAGAACATTTGGGAAATGGAGTCTTGCTGGAGGAAGTAGTTT  693

seq1  ACTAGGGTGGACTTTGAAAGTGTATGATTTCACTCACTTCCACATTGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTAGGGTGGACTTTGAAAGTGTATGATTTCACTCACTTCCACATTGCTC  743

seq1  TGAGTGTGGGTTTGAATCTGAAGATATGATTTCTTAGCTTCCTGCTCCAG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTGTGGGTTTGAATCTGAAGATATGATTTCTTAGCTTCCTGCTCCAG  793

seq1  TTGACTGCTGTCACATATTCACTGCCATTAAGTACTTCCCCTTTGGAGCT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGACTGCTGTCACATATTCACTGCCATTAAGTACTTCCCCTTTGGAGCT  843

seq1  ATTGTCAAATAAACTCTTCTTTCTATAAGCTGTCTCAGTTTGTTGTTTAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCAAATAAACTCTTCTTTCTATAAGCTGTCTCAGTTTGTTGTTTAA  893

seq1  TCAGAACAACAGACATGTAACTAATTGAAATGAGTACCAGAGAATAGGCT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAACAACAGACATGTAACTAATTGAAATGAGTACCAGAGAATAGGCT  943

seq1  ATAGCCATGAACAACCTGAAAATATTGTTTTTTTTTTTTTGGAGGAATGT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGCCATGAACAACCTGAAAATATTGTTTTTTTTTTTTTGGAGGAATGT  993

seq1  GGACTAGAAAAGAAGTTGAATTCTGTAAAGAAAGATTAATGGGCCATTGT  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACTAGAAAAGAAGTTGAATTCTGTAAAGAAAGATTAATGGGCCATTGT  1043

seq1  GGGAGGAATTC  1061
      |||||||||||
seq2  GGGAGGAATTC  1054


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