BAC Information

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BAC

Clone NameB6Ng01-319B05
Chromosome8 (Build37)2 (Build37)
Map Location 15,641,557 - 15,642,04653,425,210 - 53,426,320
singlet/doubletsingletsinglet
Overlap geneEG665619
Upstream geneDlgap2, C030037F17Rik, Cln8, Arhgef10, 2900016B01Rik, 5830468F06Rik, Kbtbd11, BB014433, Myom2, EG665599, EG234097
Downstream geneLOC634008, Csmd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319B05.bB6Ng01-319B05.g
ACCGA108801GA108802
length9601,111
definitionB6Ng01-319B05.b B6Ng01-319B05.g
singlet/doubletsingletsinglet
BLAST hituniqueunique
Map location.(15,641,557 - 15,642,046)(53,425,210 - 53,426,320)
sequence
gaattcctgatctttccaaaacttttatcatgaatgggtgttggatcttg
tcaaatgctttttctgcatctaaggagatgatcatgtggtttttgtcttt
gagtttgtttatataatggattacattgatggattttcgtatattaaacc
atccctgcatccctggaataaaacctccttggtcaggatggatgattgct
ttaatgtgttcttggattcggttagcgagaattttattgaggatttttgc
attgatattcataagagaaattggtctgaagttctctatctttgttggat
ctttctgtggtttaggtatcatagtaatagtggcttcataaaatgagtgg
gaagctctctggctctcgcctgtcccagaaacggctggcctctgttttcc
acacattcacccgtgcagcctgccctctgaagagtcctggagccaaggag
attctcgccgcaggggcccgaggcacaaaccccttgggctggggatccct
gtgcactcaccaggaaggtggccggttgtctggagcggaagatggtgccg
cctcagaagctctgtggctcttgccaggaaggtggccagttgtctggagc
cgaagaaggcaccgcctcagaagctctctggctctcgcctgtcccagaaa
cagctggcctctgtattccacacccttgcagcctgccctctgcagaggcc
tggagccaaggagactcctgcctccatggcctgaggcacaaacctctcgg
gctggcggatccctctgcactcaccaggaaggtggccggttgtctggagc
cgaagatggcgtcgcctcagaagctctctggctctctccaggaaggtggc
cggttgtctggaggttttccttcttcttgagcttcctgtggtctgtgaat
tgtatcttgggtattccaaacttctgggctaatatccactttatcagtga
gtgcaaacca

gaattctttgtttagctctgtaccccatttcttttattaaggataagaga
gtagctgggctgtgcactgccctgggggaaggctgtggtagcagcagaat
aggagaatcagttatttggtagattttagttttacaggatggtttatatg
tgcaaggggaaaacaattgttttgagagatcaaaatgttttagagtttga
agaatctgagcatttttatgggattcaaacccaaaagtactgaagtcctc
aggacatgaagcatgccacaaacctattatgaaaactgccaaagacagtt
tccatcacccaaactcgataaaacttcacaagagcaaagaaactccagga
aaaaaagaaagtggggtcttaaaatctctattgattatgtggggcttcct
ggagagaacagaaattaaaacctccagatgtgttcaagtactcatgatca
gaggggtcattggcaggtccctcataggttcatgtatcagatatttgatt
cttagataatggtatggttttgaaattccagatggtaggatctagccgga
ggaagtaggattctagggagtatgttgtttctctcctgtacttcctgtcc
acaggaatattctgacagcatgatgttctgcccaaagtcccaggatcaag
caaatatgtactgaatattcaataagtctccccaaatcgtttcttatgta
agttagcttttttgtcaagtgatgagaaaagtaactgctacacatggttt
ctgaggttttacttcagaccgggacacagaaagtaatgagtggaagccct
aattcttgtgacttcatgagaaatgaaggagggtatcttcacggcatgtc
tggctcgagtggacatttgacaacctcataaagttctctgccattattaa
cttgtactactttctatccttaggctcttaattctcgctacatcctcttg
ctaaatgttctttgaggttttgtggtagtggcgttgataaagatgtccaa
tttacagccaagtactcaggtacctcagcaatttgacagttatgcatgag
tatatattagtttgtttttaaatgtatgctttgctgtaaacgagactatt
tagtatattga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr8_15641557_15642046
seq2: B6Ng01-319B05.b_394_902

seq1  GAAGCTCTGTGGCTCTCACCTATCCCAGAAACGGCTGGCCTCTGTATTCC  50
      |||||||| |||||||| ||| ||||||||||||||||||||||| ||||
seq2  GAAGCTCTCTGGCTCTCGCCTGTCCCAGAAACGGCTGGCCTCTGTTTTCC  50

seq1  ACACTGTCACCCGTGCAGCCTGCCCTCTGCAGAGTCCTGGAGCCAAGGAG  100
      ||||  ||||||||||||||||||||||| ||||||||||||||||||||
seq2  ACACATTCACCCGTGCAGCCTGCCCTCTGAAGAGTCCTGGAGCCAAGGAG  100

seq1  ACTCCCGCCGCCGGGGCCTGAGGCACAAACCTCTCAGGCTGGCGGATCCC  150
      | || |||||| |||||| |||||||||||| ||  |||||| |||||||
seq2  ATTCTCGCCGCAGGGGCCCGAGGCACAAACCCCTTGGGCTGG-GGATCCC  149

seq1  TGTGCACTCACCAGGAAGGTGGCCGGTTGTCAGGAAGGTGGCTGGTTGTC  200
      ||||||||||||||||||||||||                   |||||||
seq2  TGTGCACTCACCAGGAAGGTGGCC-------------------GGTTGTC  180

seq1  TGGAGCCGAAGATGGTGCTGCCTCAGAAGCTCTGTGGCTCTCTCCAGGAA  250
      |||||| ||||||||||| ||||||||||||||||||||||  |||||||
seq2  TGGAGCGGAAGATGGTGCCGCCTCAGAAGCTCTGTGGCTCTTGCCAGGAA  230

seq1  GGTGGCCGGTTGTCTGGAGCTGAAGATGGCGCCGCCTCAGAAGCTCTCTG  300
      ||||||| |||||||||||| ||||| ||| |||||||||||||||||||
seq2  GGTGGCCAGTTGTCTGGAGCCGAAGAAGGCACCGCCTCAGAAGCTCTCTG  280

seq1  GCTCTTGCCTGTCCCAGAAACGGCTGGCCTCTGTATTCCACACCGTCACC  350
      ||||| ||||||||||||||| ||||||||||||||||||      ||||
seq2  GCTCTCGCCTGTCCCAGAAACAGCTGGCCTCTGTATTCCA------CACC  324

seq1  CGTGCAGCCTGCTCTCCACGGAGTCCTGGAGCCAAGGAGACTCCCGTCGC  400
      | |||||||||| |||  | ||| |||||||||||||||||||| | | |
seq2  CTTGCAGCCTGCCCTCTGCAGAGGCCTGGAGCCAAGGAGACTCCTGCCTC  374

seq1  CGGGGCCCGAGGCACAAACCTCTCGGGCTGGCGGATCCCTGTGCACTCAC  450
      |  |||| |||||||||||||||||||||||||||||||| |||||||||
seq2  CATGGCCTGAGGCACAAACCTCTCGGGCTGGCGGATCCCTCTGCACTCAC  424

seq1  CAGGAAGGTGGCCGGTTGT-------------------------------  469
      |||||||||||||||||||                               
seq2  CAGGAAGGTGGCCGGTTGTCTGGAGCCGAAGATGGCGTCGCCTCAGAAGC  474

seq1  --------------CAGGAAGGTGGCCGGTTGTCT  490
                    |||||||||||||||||||||
seq2  TCTCTGGCTCTCTCCAGGAAGGTGGCCGGTTGTCT  509


seq1: chr2_53425210_53426320
seq2: B6Ng01-319B05.g_68_1178

seq1  GAATTCTTTGTTTAGCTCTGTACCCCATTTCTTTTATTAAGGATAAGAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTGTTTAGCTCTGTACCCCATTTCTTTTATTAAGGATAAGAGA  50

seq1  GTAGCTGGGCTGTGCACTGCCCTGGGGGAAGGCTGTGGTAGCAGCAGAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCTGGGCTGTGCACTGCCCTGGGGGAAGGCTGTGGTAGCAGCAGAAT  100

seq1  AGGAGAATCAGTTATTTGGTAGATTTTAGTTTTACAGGATGGTTTATATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAGAATCAGTTATTTGGTAGATTTTAGTTTTACAGGATGGTTTATATG  150

seq1  TGCAAGGGGAAAACAATTGTTTTGAGAGATCAAAATGTTTTAGAGTTTGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAGGGGAAAACAATTGTTTTGAGAGATCAAAATGTTTTAGAGTTTGA  200

seq1  AGAATCTGAGCATTTTTATGGGATTCAAACCCAAAAGTACTGAAGTCCTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTGAGCATTTTTATGGGATTCAAACCCAAAAGTACTGAAGTCCTC  250

seq1  AGGACATGAAGCATGCCACAAACCTATTATGAAAACTGCCAAAGACAGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGACATGAAGCATGCCACAAACCTATTATGAAAACTGCCAAAGACAGTT  300

seq1  TCCATCACCCAAACTCGATAAAACTTCACAAGAGCAAAGAAACTCCAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATCACCCAAACTCGATAAAACTTCACAAGAGCAAAGAAACTCCAGGA  350

seq1  AAAAAAGAAAGTGGGGTCTTAAAATCTCTATTGATTATGTGGGGCTTCCT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAGAAAGTGGGGTCTTAAAATCTCTATTGATTATGTGGGGCTTCCT  400

seq1  GGAGAGAACAGAAATTAAAACCTCCAGATGTGTTCAAGTACTCATGATCA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGAGAACAGAAATTAAAACCTCCAGATGTGTTCAAGTACTCATGATCA  450

seq1  GAGGGGTCATTGGCAGGTCCCTCATAGGTTCATGTATCAGATATTTGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGGGTCATTGGCAGGTCCCTCATAGGTTCATGTATCAGATATTTGATT  500

seq1  CTTAGATAATGGTATGGTTTTGAAATTCCAGATGGTAGGATCTAGCCGGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAGATAATGGTATGGTTTTGAAATTCCAGATGGTAGGATCTAGCCGGA  550

seq1  GGAAGTAGGATTCTAGGGAGTATGTTGTTTCTCTCCTGTACTTCCTGTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGTAGGATTCTAGGGAGTATGTTGTTTCTCTCCTGTACTTCCTGTCC  600

seq1  ACAGGAATATTCTGACAGCATGATGTTCTGCCCAAAGTCCCAGGATCAAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGAATATTCTGACAGCATGATGTTCTGCCCAAAGTCCCAGGATCAAG  650

seq1  CAAATATGTACTGAATATTCAATAAGTCTCCCCAAATCGTTTCTTATGTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATGTACTGAATATTCAATAAGTCTCCCCAAATCGTTTCTTATGTA  700

seq1  AGTTAGCTTTTTTGTCAAAGTGATGAGAAAAGTAACTGCTACACATGGTT  750
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  AGTTAGCTTTTTTGTC-AAGTGATGAGAAAAGTAACTGCTACACATGGTT  749

seq1  TCTGAGGTTTTACTTCAGACCGGGACACAGAAAGTAATGAGTGGAAGCCC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGGTTTTACTTCAGACCGGGACACAGAAAGTAATGAGTGGAAGCCC  799

seq1  TAATTCTTGTGACTTCATGAGAAATGAAGGAGGGTATCTTCACGGCATGT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTCTTGTGACTTCATGAGAAATGAAGGAGGGTATCTTCACGGCATGT  849

seq1  CTGGCTCGAGTGGACATTTGACAACCTCATAAAGTTCTCTGCCATTATTA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGCTCGAGTGGACATTTGACAACCTCATAAAGTTCTCTGCCATTATTA  899

seq1  ACTTGTACTACTTTCTATCCTTAGGCTCTTAAATTCTCGCTACATCCTCT  950
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  ACTTGTACTACTTTCTATCCTTAGGCTCTT-AATTCTCGCTACATCCTCT  948

seq1  TGCTAAATGTTCTTTGAGGTTTTGTGGTAGTGGCGTTGATACAGATGTCC  1000
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TGCTAAATGTTCTTTGAGGTTTTGTGGTAGTGGCGTTGATAAAGATGTCC  998

seq1  CATTTACAGCCAAGTACTCAGGTACCCTCAGCATTTTGACCAGTTATGCA  1050
       ||||||||||||||||||||||| |||||||| ||||| ||||||||||
seq2  AATTTACAGCCAAGTACTCAGGTA-CCTCAGCAATTTGA-CAGTTATGCA  1046

seq1  TGAG-ATATA-TAG-TTGTTTTTAAATGTATGC-TTGCTGTTAAACAGAC  1096
      |||| ||||| ||| |||||||||||||||||| ||||||| ||  ||||
seq2  TGAGTATATATTAGTTTGTTTTTAAATGTATGCTTTGCTGTAAACGAGAC  1096

seq1  TATTAGTTATATTGA  1111
      ||||   ||||||||
seq2  TATTTAGTATATTGA  1111


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