BAC Information

Click to search

BAC

Clone NameB6Ng01-319K03
Chromosome2 (Build37)
Map Location 83,016,136 - 83,088,714
singlet/doubletdoublet
Overlap genenone
Upstream geneZfp804a, LOC100041308, A130030D18Rik, EG624362, LOC433550, LOC269292, LOC433440, Fsip2
Downstream geneLOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077, Zc3h15, Itgav, Dnmt3l-ps1, D430039N05Rik, Zswim2, LOC668096, LOC668100, LOC545432, LOC668107, LOC668113, LOC668115, LOC668119, LOC383725
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319K03.bB6Ng01-319K03.g
ACCGA109213GA109214
length9231,047
definitionB6Ng01-319K03.b B6Ng01-319K03.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(83,016,136 - 83,016,887)(83,087,653 - 83,088,714)
sequence
gaattctgcactaaacccatatggtactgggctttttttttttttttttt
gagacttttagtgactgcttctatttctttaggggaaatgggactgttta
gatcatttatctgatcctcgtttaactctggtacctcgtatctatctaga
aaattatccatttcatccaggtattctaggtttgttttgttgttcttgtt
tgttttgttgttgttgttgttgttgttgttgttgttgtttgagtataggc
ttttgtagtagaatctcatgatttttttgaacttccttggtttctgttgt
tatgtctcccttttcatttctgattttgtttatttggatactgtctctct
gcccttggttagtctggctaagggtttatctatcttgtttattttctcaa
agaaccagatcctggttttgttgattctttgtatagttctttttgtttct
acttggttgattttagctctgcgtttgattatttcttgtgttctactcct
cttgggtgtatttgctttttttgtgtgctaaagctttcacgcatgctatc
aaggtgctagtgtatgctctctccagtttctttttggaggacctagagct
atgagtttttctcttagcactgccttcattgtgtcccatatgtttgggta
tgttgtaattcctatgggatgagacatatatatttttcaagaacccccca
aaatgtttggaaaacattgaagccatactttctacctaagctttcatgtt
gtagaaactccaagtctagaaatctgtactggactacgggcagccttaag
aaattaggggaaatagaactataatctggcttatagggtgggtgagtttt
cctccaatccggaatttaagataatagttaagacccccctcccctaattt
ctgggattttggaaatattactc
gaattctgagattatgtgagaagacagtccatttcctacgtgatgatgat
gatgaaatgttggtagatgaaggctggaattatgacagccattactgatt
ataaagatctctctgtctctgtctctgtctctctctctctctccccatat
atgtttgtgcatgtgaatgggctgagcatttctgaaggttctcctgatag
agtattagagaaaatgtatgacttgaggatcaaagacaatagtgaatatg
gagtactaagtctgagagtaactgcattcagtggtgttggtttacccact
ggatttcaatttggtgtagtccacacctgctactcatagcttatttatat
ggattaaaatttgtcttcattatctaggccagcttgatttgactttggtt
aactacaaaattctatgttataaactgttctgctgtattgctgaatttat
attctctctttgaggtagtgcaaaggttaaataagacatctcctattgat
tgagtgttgacaaaagaccatatattaccctttctgcagtttttctatat
agttgcagattgaaggtgaagcccagtgatttaagggctctttgagttaa
acagaaattgaaaagacaaatgtagaatcttctggcaaatatgcagagcg
atacctgcagagaatcagcaaccataaaacagttactaatatagccttgg
taagggtcccacctcctggcatcaggagatcctggcaaaccagtaaatca
ttacttattttgatatttattaattttttagcaatatgcattcttcctct
tgtgttttgttaagtagtcgtctgatctggagacaaaagtagatacctca
acccctttaaagcattgaattgataatcatgctatatttcactgaatggg
agggggttcttttaaacttttcattttttctttattaacaatatatcgtt
tctgcacacataatcctgattaaatttcccctcctctatccctcagtgct
cttactcccctccactttcctttctgtctctcatagacagactgttt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_83016136_83016887
seq2: B6Ng01-319K03.b_202_967

seq1  CCATTTCATCCAGGTATTCTAGGTTTGTTTTGTTGTTCTTGTTTGTTTTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTTCATCCAGGTATTCTAGGTTTGTTTTGTTGTTCTTGTTTGTTTTG  50

seq1  TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGAGTATAGGCTTTTGTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTTGAGTATAGGCTTTTGTA  100

seq1  GTAGAATCTCATGATTTTTTTGAACTTCCTTGGTTTCTGTTGTTATGTCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGAATCTCATGATTTTTTTGAACTTCCTTGGTTTCTGTTGTTATGTCT  150

seq1  CCCTTTTCATTTCTGATTTTGTTTATTTGGATACTGTCTCTCTGCCCTTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTTTCATTTCTGATTTTGTTTATTTGGATACTGTCTCTCTGCCCTTG  200

seq1  GTTAGTCTGGCTAAGGGTTTATCTATCTTGTTTATTTTCTCAAAGAACCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTCTGGCTAAGGGTTTATCTATCTTGTTTATTTTCTCAAAGAACCA  250

seq1  GATCCTGGTTTTGTTGATTCTTTGTATAGTTCTTTTTGTTTCTACTTGGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCTGGTTTTGTTGATTCTTTGTATAGTTCTTTTTGTTTCTACTTGGT  300

seq1  TGATTTTAGCTCTGCGTTTGATTATTTCTTGTGTTCTACTCCTCTTGGGT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTTAGCTCTGCGTTTGATTATTTCTTGTGTTCTACTCCTCTTGGGT  350

seq1  GTATTTGCTTTTTTTGTGTGCTAAAGCTTTCACGCATGCTATCAAGGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTTGCTTTTTTTGTGTGCTAAAGCTTTCACGCATGCTATCAAGGTGC  400

seq1  TAGTGTATGCTCTCTCCAGTTTCTTTTTGGAGGACCTAGAGCTATGAGTT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTGTATGCTCTCTCCAGTTTCTTTTTGGAGGACCTAGAGCTATGAGTT  450

seq1  TTTCTCTTAGCACTGCCTTCATTGTGTCCCATATGTTTGGGTATGTTGTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTTAGCACTGCCTTCATTGTGTCCCATATGTTTGGGTATGTTGTA  500

seq1  ATTCCTATGGGATGAGACATATATATTTTTCAAGAACCCCCCAAAATGTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCCTATGGGATGAGACATATATATTTTTCAAGAACCCCCCAAAATGTT  550

seq1  AGG-AAACA-TGAAGCCATAC-TTCTACCTAAGC-TTCATGTTGTAGAAA  596
       || ||||| ||||||||||| |||||||||||| |||||||||||||||
seq2  TGGAAAACATTGAAGCCATACTTTCTACCTAAGCTTTCATGTTGTAGAAA  600

seq1  CTCCAAGTCTAGAAATCTGTACT-GACTAACGGCAGCCTTAAGAAATTA-  644
      ||||||||||||||||||||||| |||||  |||||||||||||||||| 
seq2  CTCCAAGTCTAGAAATCTGTACTGGACTACGGGCAGCCTTAAGAAATTAG  650

seq1  GGGAAATAGAACTATAATCT-GCTTATAGG--TGGTGAGTTTT-CTCAAA  690
      |||||||||||||||||||| |||||||||   |||||||||| ||| ||
seq2  GGGAAATAGAACTATAATCTGGCTTATAGGGTGGGTGAGTTTTCCTCCAA  700

seq1  TCTGGAGTTTAAGAGAATAGTT-AGACCCCC--TCCCTAATTTCTGGGTT  737
      || ||| ||||||| ||||||| ||||||||   |||||||||||||| |
seq2  TCCGGAATTTAAGATAATAGTTAAGACCCCCCTCCCCTAATTTCTGGGAT  750

seq1  TTTGG-AATATTACTC  752
      ||||| ||||||||||
seq2  TTTGGAAATATTACTC  766

seq1: chr2_83087653_83088714
seq2: B6Ng01-319K03.g_69_1115 (reverse)

seq1  AAACAGGTTCTTGTCTAATGAGAGACAGAAA-GAAAGTGGAGGGGAGGTA  49
      ||||||  || ||||| |||||||||||||| |||||||||||||| |||
seq2  AAACAG--TC-TGTCT-ATGAGAGACAGAAAGGAAAGTGGAGGGGA-GTA  45

seq1  AGGAGCAACTGGAAGGGATAGAGGGAGGGGAAAATTTAATCAGGATTTAA  99
      | |||| ||||  ||||||||| ||||||| ||||||||||||||||  |
seq2  A-GAGC-ACTG--AGGGATAGA-GGAGGGG-AAATTTAATCAGGATT--A  87

seq1  TGTGTGCAGAAACGATATATGTTAAATAAAAGAAAAAATGAAAAGTTTAA  149
      ||||||||||||||||||||  | ||| ||||||||||||||||||||||
seq2  TGTGTGCAGAAACGATATATTGTTAAT-AAAGAAAAAATGAAAAGTTTAA  136

seq1  AAGAACCCCCTCCCATTCAGTGAAATATAGCATGATTATCAATTCAATGC  199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAACCCCCTCCCATTCAGTGAAATATAGCATGATTATCAATTCAATGC  186

seq1  TTTAAAGGGGTTTGAGGTATCTACTTTTGTCTCCAGATCAGACGACTACT  249
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  TTTAAAGGGG-TTGAGGTATCTACTTTTGTCTCCAGATCAGACGACTACT  235

seq1  TAACAAAACACAAGAGGAAGAATGCATATTTGCTAAAAAATTAATAAATA  299
      |||||||||||||||||||||||||||| |||||||||||||||||||||
seq2  TAACAAAACACAAGAGGAAGAATGCATA-TTGCTAAAAAATTAATAAATA  284

seq1  TCAAAATAAGTAATGATTTACTGGTTTGCCAGGATCTCCTGATGCCAGGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAATAAGTAATGATTTACTGGTTTGCCAGGATCTCCTGATGCCAGGA  334

seq1  GGTGGGACCCTTACCAAGGCTATATTAGTAACTGTTTTATGGTTGCTGAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGGGACCCTTACCAAGGCTATATTAGTAACTGTTTTATGGTTGCTGAT  384

seq1  TCTCTGCAGGTATCGCTCTGCATATTTGCCAGAAGATTCTACATTTGTCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGCAGGTATCGCTCTGCATATTTGCCAGAAGATTCTACATTTGTCT  434

seq1  TTTCAATTTCTGTTTAACTCAAAGAGCCCTTAAATCACTGGGCTTCACCT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAATTTCTGTTTAACTCAAAGAGCCCTTAAATCACTGGGCTTCACCT  484

seq1  TCAATCTGCAACTATATAGAAAAACTGCAGAAAGGGTAATATATGGTCTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAATCTGCAACTATATAGAAAAACTGCAGAAAGGGTAATATATGGTCTT  534

seq1  TTGTCAACACTCAATCAATAGGAGATGTCTTATTTAACCTTTGCACTACC  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAACACTCAATCAATAGGAGATGTCTTATTTAACCTTTGCACTACC  584

seq1  TCAAAGAGAGAATATAAATTCAGCAATACAGCAGAACAGTTTATAACATA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGAGAGAATATAAATTCAGCAATACAGCAGAACAGTTTATAACATA  634

seq1  GAATTTTGTAGTTAACCAAAGTCAAATCAAGCTGGCCTAGATAATGAAGA  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTTTGTAGTTAACCAAAGTCAAATCAAGCTGGCCTAGATAATGAAGA  684

seq1  CAAATTTTAATCCATATAAATAAGCTATGAGTAGCAGGTGTGGACTACAC  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTTTAATCCATATAAATAAGCTATGAGTAGCAGGTGTGGACTACAC  734

seq1  CAAATTGAAATCCAGTGGGTAAACCAACACCACTGAATGCAGTTACTCTC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATTGAAATCCAGTGGGTAAACCAACACCACTGAATGCAGTTACTCTC  784

seq1  AGACTTAGTACTCCATATTCACTATTGTCTTTGATCCTCAAGTCATACAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACTTAGTACTCCATATTCACTATTGTCTTTGATCCTCAAGTCATACAT  834

seq1  TTTCTCTAATACTCTATCAGGAGAACCTTCAGAAATGCTCAGCCCATTCA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCTAATACTCTATCAGGAGAACCTTCAGAAATGCTCAGCCCATTCA  884

seq1  CATGCACAAACATATATGGGGAGAGAGAGAGAGAGACAGAGACAGAGACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACAAACATATATGGGGAGAGAGAGAGAGAGACAGAGACAGAGACA  934

seq1  GAGAGATCTTTATAATCAGTAATGGCTGTCATAATTCCAGCCTTCATCTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGATCTTTATAATCAGTAATGGCTGTCATAATTCCAGCCTTCATCTA  984

seq1  CCAACATTTCATCATCATCATCACGTAGGAAATGGACTGTCTTCTCACAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAACATTTCATCATCATCATCACGTAGGAAATGGACTGTCTTCTCACAT  1034

seq1  AATCTCAGAATTC  1062
      |||||||||||||
seq2  AATCTCAGAATTC  1047