BAC Information

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BAC

Clone NameB6Ng01-319K11
Chromosome2 (Build37)
Map Location 82,246,135 - 82,428,244
singlet/doubletdoublet
Overlap geneEG624362, LOC433550, LOC269292
Upstream geneLOC100040704, Zfp804a, LOC100041308, A130030D18Rik
Downstream geneLOC433440, Fsip2, LOC545429, Ppia-ps2_981.1, LOC100040818, LOC668077
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-319K11.bB6Ng01-319K11.g
ACCGA109229GA109230
length6371,141
definitionB6Ng01-319K11.b B6Ng01-319K11.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,246,135 - 82,246,771)(82,427,115 - 82,428,244)
sequence
gaattctgtgtgtactagtttataactcatagagatctacttatcactgc
ctcccaagagcactgagattaaaaatcatgatgtcttaccacactgactg
tgacatattcttgtttttttcccatttatttatttatttagtcccgacca
tcatatagcccttctcccatacctcttctcaaaagaggagaggaccccgt
gggtaccaacacattctggcacatcaagtctctggaggactaggcacatc
ctctcccactgaggctagaagaggcagcccagttagggtaggaggcaggc
aacagagacagggacagccactactaccgttttgggtggtggtggctcat
gaagaccaagctgtacatctgctacatatgtgggggtgggagagggtgat
gctaggtccagatcaaatatgcttttttttttttttgtttgtttgaggtc
agtctctgagagccctcaaaggccgaggctagtgaactctgttggtctta
ttgcatagtccttgtcctcttcaagtccctcaattcctcttccaactctt
ccacaaggccccctgaacttcatctaatgtttgactgtgggcctctgctg
ctgggtggaggctctcagattaaaagtatgctagcct

gaattctttgttcagttctgagccccatttttttttaatgggattatttg
attttctggagtcaccttcttgagttctttatatatattggaaattagtc
ccctatctgatttaggataggtatagatataagtaggaaatcttgaagca
tgaaagatcttttaagggaagtaacaaaaacacaggttttttttaaaaaa
atatttatttatttatttatttatttatttatttatgtatttatttattt
tgtgatatggtttctttgtatagctctgggtgacctggaactcactctgt
agaccaggctggcctcgaactcagaaatctacctgcccctgcctcccaag
ttctgggattaaagtcatatgccatgattgcctgacttaaaaacacaggt
tcttatcctagaaatactcttaatataagacagtgaaggttatacttgaa
gtcaagtgttttataatcatctcgtgttgaggttatcagtaaaagttaat
attgccttggtcatactataaaatagtgttgcatgacatccagcagctct
tgaggaatgggtagggctgagatggcagactggagctgaaagaaaaggaa
ctagacagatgagaaaaagaacagagctgagacaaacaaggttgtgatta
aagctcaattttactatttggtgcaccaagttatgaaggagggggaagga
gcccattcccaccaaatcatcctggagtccagtttcaggtgaccacatgt
ttgactcctgaacagcaaggcgacaagcagcagcagtgggagtggcagaa
cgatagggtggcaggctctaccccatgctctcttcctgctaacagtgaaa
cttgcaaacaggtttcaggctgaggttacaaaatacaacacaagattgaa
tatttctggaatgacaagcttagatgagtttgctttcacagcctgggagc
aaggaagtccttactctcttaatgtattaagccttcatgaacacttgtgt
gttttttaatagctctgcatgtacaatagcatctacttactaggtgaata
aatttcaacaccttatttgaatagtgcagcataatataaaattacccaca
gccagaaatatttgttctgtagcaagtctgaagaaagtata
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_82246135_82246771
seq2: B6Ng01-319K11.b_46_682

seq1  GAATTCTGTGTGTACTAGTTTATAACTCATAGAGATCTACTTATCACTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGTGTACTAGTTTATAACTCATAGAGATCTACTTATCACTGC  50

seq1  CTCCCAAGAGCACTGAGATTAAAAATCATGATGTCTTACCACACTGACTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCCCAAGAGCACTGAGATTAAAAATCATGATGTCTTACCACACTGACTG  100

seq1  TGACATATTCTTGTTTTTTTCCCATTTATTTATTTATTTAGTCCCGACCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACATATTCTTGTTTTTTTCCCATTTATTTATTTATTTAGTCCCGACCA  150

seq1  TCATATAGCCCTTCTCCCATACCTCTTCTCAAAAGAGGAGAGGACCCCGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATATAGCCCTTCTCCCATACCTCTTCTCAAAAGAGGAGAGGACCCCGT  200

seq1  GGGTACCAACACATTCTGGCACATCAAGTCTCTGGAGGACTAGGCACATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTACCAACACATTCTGGCACATCAAGTCTCTGGAGGACTAGGCACATC  250

seq1  CTCTCCCACTGAGGCTAGAAGAGGCAGCCCAGTTAGGGTAGGAGGCAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCCCACTGAGGCTAGAAGAGGCAGCCCAGTTAGGGTAGGAGGCAGGC  300

seq1  AACAGAGACAGGGACAGCCACTACTACCGTTTTGGGTGGTGGTGGCTCAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAGAGACAGGGACAGCCACTACTACCGTTTTGGGTGGTGGTGGCTCAT  350

seq1  GAAGACCAAGCTGTACATCTGCTACATATGTGGGGGTGGGAGAGGGTGAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCAAGCTGTACATCTGCTACATATGTGGGGGTGGGAGAGGGTGAT  400

seq1  GCTAGGTCCAGATCAAATATGCTTTTTTTTTTTTTTGTTTGTTTGAGGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGGTCCAGATCAAATATGCTTTTTTTTTTTTTTGTTTGTTTGAGGTC  450

seq1  AGTCTCTGAGAGCCCTCAAAGGCCGAGGCTAGTGAACTCTGTTGGTCTTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCTCTGAGAGCCCTCAAAGGCCGAGGCTAGTGAACTCTGTTGGTCTTA  500

seq1  TTGCATAGTCCTTGTCCTCTTCAAGTCCCTCAATTCCTCTTCCAACTCTT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATAGTCCTTGTCCTCTTCAAGTCCCTCAATTCCTCTTCCAACTCTT  550

seq1  CCACAAGGCCCCCTGAACTTCATCTAATGTTTGACTGTGGGCCTCTGCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAAGGCCCCCTGAACTTCATCTAATGTTTGACTGTGGGCCTCTGCTG  600

seq1  CTGGGTGGAGGCTCTCAGATTAAAAGTATGCTAGCCT  637
      |||||||||||||||||||||||||||||||||||||
seq2  CTGGGTGGAGGCTCTCAGATTAAAAGTATGCTAGCCT  637


seq1: chr2_82427115_82428244
seq2: B6Ng01-319K11.g_69_1209 (reverse)

seq1  TATACTTTTCTCTAGAC-TGCTACAG-ACAAATATCT---GCTGTGG--T  43
      ||||| |||||  |||| |||||||| |||||||| |   |||||||   
seq2  TATAC-TTTCTTCAGACTTGCTACAGAACAAATATTTCTGGCTGTGGGTA  49

seq1  ATTTTATATTATGGCCTGCACTATTCAAATAA-GTGTGAAAATTTA-TCA  91
      |||||||||||||  ||||||||||||||||| ||||  ||||||| |||
seq2  ATTTTATATTATG--CTGCACTATTCAAATAAGGTGTTGAAATTTATTCA  97

seq1  CCTAGTAAGTAGATGCTA-TGTACATGCAGAGCTAT--AAAAACACACAA  138
      |||||||||||||||||| |||||||||||||||||  ||||||||||||
seq2  CCTAGTAAGTAGATGCTATTGTACATGCAGAGCTATTAAAAAACACACAA  147

seq1  GTGTTCATGAAGGC-TAATACATTAAGAGAGTAAGGACTTCC-TGCTCCC  186
      |||||||||||||| ||||||||||||||||||||||||||| |||||||
seq2  GTGTTCATGAAGGCTTAATACATTAAGAGAGTAAGGACTTCCTTGCTCCC  197

seq1  AGGCTGTGAAAGCAAACTCATCTAAGCTTGTCATTCCAGAAATATTCAAT  236
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCTGTGAAAGCAAACTCATCTAAGCTTGTCATTCCAGAAATATTCAAT  247

seq1  CTTGTGTTGTATTTTGTAACCTCAGCCTGAAACCTGTTTGCAAGTTTCAC  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTGTTGTATTTTGTAACCTCAGCCTGAAACCTGTTTGCAAGTTTCAC  297

seq1  TGTTAGCAGGAAGAGAGCATGGGGTAGAGCCTGCCACCCTATCGTTCTGC  336
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTAGCAGGAAGAGAGCATGGGGTAGAGCCTGCCACCCTATCGTTCTGC  347

seq1  CACTCCCACTGCTGCTGCTTGTCGCCTTGCTGTTCAGGAGTCAAACATGT  386
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCACTGCTGCTGCTTGTCGCCTTGCTGTTCAGGAGTCAAACATGT  397

seq1  GGTCACCTGAAACTGGACTCCAGGATGATTTGGTGGGAATGGGCTCCTTC  436
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCACCTGAAACTGGACTCCAGGATGATTTGGTGGGAATGGGCTCCTTC  447

seq1  CCCCTCCTTCATAACTTGGTGCACCAAATAGTAAAATTGAGCTTTAATCA  486
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTCCTTCATAACTTGGTGCACCAAATAGTAAAATTGAGCTTTAATCA  497

seq1  CAACCTTGTTTGTCTCAGCTCTGTTCTTTTTCTCATCTGTCTAGTTCCTT  536
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTTGTTTGTCTCAGCTCTGTTCTTTTTCTCATCTGTCTAGTTCCTT  547

seq1  TTCTTTCAGCTCCAGTCTGCCATCTCAGCCCTACCCATTCCTCAAGAGCT  586
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTTCAGCTCCAGTCTGCCATCTCAGCCCTACCCATTCCTCAAGAGCT  597

seq1  GCTGGATGTCATGCAACACTATTTTATAGTATGACCAAGGCAATATTAAC  636
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGATGTCATGCAACACTATTTTATAGTATGACCAAGGCAATATTAAC  647

seq1  TTTTACTGATAACCTCAACACGAGATGATTATAAAACACTTGACTTCAAG  686
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTGATAACCTCAACACGAGATGATTATAAAACACTTGACTTCAAG  697

seq1  TATAACCTTCACTGTCTTATATTAAGAGTATTTCTAGGATAAGAACCTGT  736
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAACCTTCACTGTCTTATATTAAGAGTATTTCTAGGATAAGAACCTGT  747

seq1  GTTTTTAAGTCAGGCAATCATGGCATATGACTTTAATCCCAGAACTTGGG  786
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTAAGTCAGGCAATCATGGCATATGACTTTAATCCCAGAACTTGGG  797

seq1  AGGCAGGGGCAGGTAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAG  836
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGGGCAGGTAGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAGAG  847

seq1  TGAGTTCCAGGTCACCCAGAGCTATACAAAGAAACCATATCACAAAATAA  886
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGTTCCAGGTCACCCAGAGCTATACAAAGAAACCATATCACAAAATAA  897

seq1  ATAAATACATAAATAAATAAATAAATAAATAAATAAATAAATATTTTTTT  936
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAATACATAAATAAATAAATAAATAAATAAATAAATAAATATTTTTTT  947

seq1  AAAAAAAACCTGTGTTTTTGTTACTTCCCTTAAAAGATCTTTCATGCTTC  986
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAACCTGTGTTTTTGTTACTTCCCTTAAAAGATCTTTCATGCTTC  997

seq1  AAGATTTCCTACTTATATCTATACCTATCCTAAATCAGATAGGGGACTAA  1036
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTCCTACTTATATCTATACCTATCCTAAATCAGATAGGGGACTAA  1047

seq1  TTTCCAATATATATAAAGAACTCAAGAAGGTGACTCCAGAAAATCAAATA  1086
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCAATATATATAAAGAACTCAAGAAGGTGACTCCAGAAAATCAAATA  1097

seq1  ATCCCATTAAAAAAAAATGGGGCTCAGAACTGAACAAAGAATTC  1130
      ||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCATTAAAAAAAAATGGGGCTCAGAACTGAACAAAGAATTC  1141


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