BAC Information

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BAC

Clone NameB6Ng01-321E12
Chromosome2 (Build37)
Map Location 36,008,936 - 36,010,107
singlet/doubletsinglet
Overlap geneMrrf
Upstream geneRab14, Gsn, Stom, LOC654354, 4930568D16Rik, 4930402F06Rik, Ggta1, LOC666042, LOC100042194, Dab2ip, Ttll11, Ndufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236
Downstream geneLOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321E12.bB6Ng01-321E12.g
ACCGA110432GA110433
length1,1611,221
definitionB6Ng01-321E12.b B6Ng01-321E12.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattccaatgtgattctgctagcattacatactctttccactgcctgaa
acttcctgtgaacagccttgtcacattggtaagatgcttatgtatgtttg
ttgaatctgaattagataaagaggtatgagcttctaaggtcctttagaat
cctaaaaccttattactttttctttaggatcccttgatcatattactgtg
gtaactgctgatgggaaggttgctctaaatcagattggccagatctccat
gaagtcgccacaggtgattctggtgaatatggccagcttcccagaggtaa
ggtgccttattgtaagggtctgtcttcagagtttcttttggaataaagga
ggtttgatcaggtcagaaggaaatgttcccttttgtttgggaagaaattt
atgaaagaaaatttaggataaaaaaaaagctctcttatttctatatttct
tacctgttaaactcaaatgttacagtgaccaagtaagtaatttgaaaaac
aataatggagagtagtgactgactcttggggcagtgtaagggtctgctaa
cctgctgtcttagttacttttctattgctgtgacaaatcactatgaccaa
ggcaacttaaagaagaaagcacttaattcgagtctcatagttccaggggg
ttagtctctgaccatcatggaggggaacatggtagcaggcaggcagacat
ggagatggagcatagctaaaagcttttgaaactttaaaactgacccccag
agacacatctcttccaacaaggccacacataataatccttcccaaacagt
tccacaaaatggggaccaaacattcaaatatatgattctaaaggggccat
tctcattcaaaccaccatacctggaagtagtcacgcgggcctgtttctga
gtcacctctgcccagttcttgcagaagactgcagggtagaaatgtaggcc
tggtaattcctattaacagatgcttcaatttttagtttcaaaagaagcta
gtatccctgaatgttgtacaaagtatcgtttgttgtctaaatgttttgaa
tatcacttttctctttaaatgtctggccaggcaggagtgctgacttgtgt
tctgttatctcagctctaggagtagagtcggagaccatgaactgctcaaa
ataactagaaa
gaattcaataccctactgtcataaatggacagatcatggaaacaccaact
aaatggagacacatttaaactaacagaagttatgaactttaatttaattg
gtatctatagaacatttcattctaaaacaaaagaatgcaccttcttctca
gcacctcatgatacctcagcaccttcttccaaatttaccatataatcggt
cacaaaacaggcctcaacaagaaggttgaaatattcccatgcatcctatc
agatcactagagactaagactggtcttcaatagcaacaaaaacaacagaa
agtccacatacacatggaagactggtcttcaatagcaacaaaaacaacag
aaagcccacataaacatggaagactggtcttcaatagcaacaaaaacaac
agaaagcccacagacacatggaagctgaacagtgtactcaatgataactt
ggtcaaggaagaaacaaaaaagaagattaaagactttttagaatttaatg
aaaatgaaggctcaatatacccttatgggtcacaatgaaagcagtgctaa
gaggaaaactgatagccctgagtgcctccaaaaagaaactgaagagagca
tgccctaacagcttaacagttcttaatatctgaaagttctagaacaaaaa
gaagcaaatacacccaagaggagtagacaggaaataatcaaactcagggc
taaaatcaaacaagtagaaacaaataaaaactatacaaagaagcagcaaa
accaggagctggttctttgagaaaatcaacaagctagatagatgaaccct
tagccagactaaccagagagcacaaagacaatatccaaattaacaaaatc
agaaatgaaaggggagatataacaacagaaactgaggaatttttttaaaa
aatcatcagatcctctacaaaagcctatactcaacacaactggaaaatca
ggatgaatggacaattttctagacaaataccaaatacctaggttaaatca
agatcagaataaaccatctaaacagtcccataccacctaaagaaatagca
gcagtcataaagttctccaccaagaaaaaaagccagaccgatggtttagt
gcagattctattcagaccttcaaatgaacttaaaggcatacctcttccaa
ctatccaaaatgaatgaagcatccataccagtcattcatggagcccacag
tacacctccaaatattctctc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_36008936_36010107
seq2: B6Ng01-321E12.b_42_1202

seq1  GAATTCCAATGTGATTCTGCTAGCATTACATACTCTTTCCACTGCCTGAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCAATGTGATTCTGCTAGCATTACATACTCTTTCCACTGCCTGAA  50

seq1  ACTTCCTGTGAACAGCCTTGTCACATTGGTAAGATGCTTATGTATGTTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCTGTGAACAGCCTTGTCACATTGGTAAGATGCTTATGTATGTTTG  100

seq1  TTGAATCTGAATTAGATAAAGAGGTATGAGCTTCTAAGGTCCTTTAGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAATCTGAATTAGATAAAGAGGTATGAGCTTCTAAGGTCCTTTAGAAT  150

seq1  CCTAAAACCTTATTACTTTTTCTTTAGGATCCCTTGATCATATTACTGTG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAAAACCTTATTACTTTTTCTTTAGGATCCCTTGATCATATTACTGTG  200

seq1  GTAACTGCTGATGGGAAGGTTGCTCTAAATCAGATTGGCCAGATCTCCAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAACTGCTGATGGGAAGGTTGCTCTAAATCAGATTGGCCAGATCTCCAT  250

seq1  GAAGTCGCCACAGGTGATTCTGGTGAATATGGCCAGCTTCCCAGAGGTAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCGCCACAGGTGATTCTGGTGAATATGGCCAGCTTCCCAGAGGTAA  300

seq1  GGTGCCTTATTGTAAGGGTCTGTCTTCAGAGTTTCTTTTGGAATAAAGGA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGCCTTATTGTAAGGGTCTGTCTTCAGAGTTTCTTTTGGAATAAAGGA  350

seq1  GGTTTGATCAGGTCAGAAGGAAATGTTCCCTTTTGTTTGGGAAGAAATTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTGATCAGGTCAGAAGGAAATGTTCCCTTTTGTTTGGGAAGAAATTT  400

seq1  ATGAAAGAAAATTTAGGATAAAAAAAAAGCTCTCTTATTTCTATATTTCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAGAAAATTTAGGATAAAAAAAAAGCTCTCTTATTTCTATATTTCT  450

seq1  TACCTGTTAAACTCAAATGTTACAGTGACCAAGTAAGTAATTTGAAAAAC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTGTTAAACTCAAATGTTACAGTGACCAAGTAAGTAATTTGAAAAAC  500

seq1  AATAATGGAGAGTAGTGACTGACTCTTGGGGCAGTGTAAGGGTCTGCTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATGGAGAGTAGTGACTGACTCTTGGGGCAGTGTAAGGGTCTGCTAA  550

seq1  CCTGCTGTCTTAGTTACTTTTCTATTGCTGTGACAAATCACTATGACCAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGCTGTCTTAGTTACTTTTCTATTGCTGTGACAAATCACTATGACCAA  600

seq1  GGCAACTTAAAGAAGAAAGCACTTAATTCGAGTCTCATAGTTCCAGGGGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAACTTAAAGAAGAAAGCACTTAATTCGAGTCTCATAGTTCCAGGGGG  650

seq1  TTAGTCTCTGACCATCATGGAGGGGAACATGGTAGCAGGCAGGCAGACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGTCTCTGACCATCATGGAGGGGAACATGGTAGCAGGCAGGCAGACAT  700

seq1  GGAGATGGAGCATAGCTAAAAGCTTTTGAAACTTTAAAACTGACCCCCAG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGATGGAGCATAGCTAAAAGCTTTTGAAACTTTAAAACTGACCCCCAG  750

seq1  AGACACATCTCTTCCAACAAGGCCACACATAATAATCCTTCCCAAACAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACACATCTCTTCCAACAAGGCCACACATAATAATCCTTCCCAAACAGT  800

seq1  TCCACAAAATGGGGACCAAACATTCAAATATATGATTCTAAAGGGGCCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACAAAATGGGGACCAAACATTCAAATATATGATTCTAAAGGGGCCAT  850

seq1  TCTCATTCAAACCACCATACCTGGAAGTAGTCACGC-GGCCTGTTTCTGA  899
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  TCTCATTCAAACCACCATACCTGGAAGTAGTCACGCGGGCCTGTTTCTGA  900

seq1  GTCACCTCTGCCCAGTTCTTGCAGAAGACTGCAGGGTAGAAATGTAGGCC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCACCTCTGCCCAGTTCTTGCAGAAGACTGCAGGGTAGAAATGTAGGCC  950

seq1  TGGTAATTCCTATTAACAGATGCTTCAATTTTTAGTTTCAAAAGAAGCTA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTAATTCCTATTAACAGATGCTTCAATTTTTAGTTTCAAAAGAAGCTA  1000

seq1  GTAATCCTGAATGTTGTACAAAGTATCGTTTGTTGTCTAAATGTTTTGGA  1049
      |||  |||||||||||||||||||||||||||||||||||||||||| ||
seq2  GTATCCCTGAATGTTGTACAAAGTATCGTTTGTTGTCTAAATGTTTT-GA  1049

seq1  ATAATCCACTTTTCTCTTTTAAAAATGTCTGG-CAGCCAGGAGTGCTGAC  1098
      |||   |||||||||||||   |||||||||| ||| |||||||||||||
seq2  ATA--TCACTTTTCTCTTT---AAATGTCTGGCCAGGCAGGAGTGCTGAC  1094

seq1  TTGTG-TCTGTTATCTCAGCTCTTAGGAGTTAGAGGCCGGAGGACCAATG  1147
      ||||| |||||||||||||||| |||||| |||| | |||| |||| |||
seq2  TTGTGTTCTGTTATCTCAGCTC-TAGGAG-TAGA-GTCGGA-GACC-ATG  1139

seq1  AGACTGCCTCAAAATAAACTAGAAA  1172
      | |||| |||||||| |||||||||
seq2  A-ACTG-CTCAAAAT-AACTAGAAA  1161