BAC Information

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BAC

Clone NameB6Ng01-321P22
Chromosome2 (Build37)
Map Location 78,038,617 - 78,186,181
singlet/doubletdoublet
Overlap geneLOC667920, OTTMUSG00000016703
Upstream geneSestd1, LOC623706, LOC667906, Zfp533, BC003993
Downstream geneLOC383717, LOC100040476, LOC100040494, 4930401B11Rik, Ube2e3, LOC100040526, Itga4, Cerkl
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-321P22.bB6Ng01-321P22.g
ACCGA110956GA110957
length1,1271,092
definitionB6Ng01-321P22.b B6Ng01-321P22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,185,052 - 78,186,181)(78,038,617 - 78,039,714)
sequence
gaattcatgtcaccaagtttagtggaatatcaatgcaatataataagtaa
ctagttcccgaaaagatcatctgagcttaaatttttgatatttaaaatct
ttcaggaaagagaattttttaaaaaaaaattctgagttagacctaaagat
tcaaaaacaattatggtttctacttttaaatgtcaccttattctgagaat
tttgcttttaatgataagcagaaatttctgaagacatatagcctcagtca
tgacctcagacaggaagggagagcacactgcctagcatgtacccaggaga
gatggcctgcagaagaaatgtcaggaacaaggatttctctgagcccatca
ttgccaggcacctgtgctccaggtgtctctcctgtcacctgggagcaggc
atgttgccatgtcagcagattagtattagaactgaaggcaaagaaatgat
gtagagtatgtatttcaatcctgagtgtggagacttggagtcccaactgg
aaccgtgtccattgctttctaagcttgtatcatactagagattggactag
tatgcagaatgcagcttttcagagaactggcgttcagggaaaatatacat
tcacaaagggaaggacatgttttatgtgacaagtcaggagtaaaagaaaa
ataccaaataatacttgaggaaatttcctaagtatattatctctactaaa
atgatatttaggaggtgtaagaaggaacgttttcattccatggatgcatt
gtgtcagaaccactggaattcaaaaaccctatggattcctaacatgtcag
accatctttcatcttttctaagcatcctggtcaaacaaatcccagagctg
aagtaactctggggataaaatcaaattccatttttaagtccacatgttct
aagacatacttccagttcatattaccactctagacagtactatatatttt
gaaagtaaaatttcctggcattcattgattaatagcatccactggccagt
tatttcagaataataaaaatgtagtatgctgtgttactttgtatttaaat
atttacctatatcattatcattatacattattttaaatgctcattccatg
ttttaatcatattctggccatcagcat

gaattctcaggaggcaagaagaaaacctaggcactatggttggcatgtag
ggaagagaggacagagatgctgaaaaagggatgtgcttaatgaagctaag
agatgataggaaatcagtgtgcatcagcaaggggaacaatcagcaggagc
tacagacagtaggcgtgggagatcaaggcaatgtgtttgcgcttggttcc
atggacattggaaagtcttggaagaacacagagaagcaagaatcattatc
tgatttacatataacactttgctggtaaaggctagttagctatcagggga
aggaacaaaagcaaaaggtcatgacaaggtgacagcactgaactgtctac
attctagaggtggtacaacctgggagaatggagctgataaatgaggtaga
ttaaactctcttgcaatagccaatgctagctggagcatcagacagtttat
attgtgagggttaaaaggggtcacatgagtacagagtgcaaccacaaagg
caagctgcacttatttggccacaacatcctttttcatagaggcatataga
caaataaaaataaccggttgtaatgaataatctacataaacacactccta
tccactatacctgtgaggatcacaaaaagcacattctaagaagaaacaca
ttccaaaaacaattctgtgttttgaagaaactgaggtcacaagactcttg
tcttggtttcttacaagcactcaaaattgtcttcacaggactccattctt
ggatcgtgttctgacacttaacaagttgggtccctgtagtgggcatcaac
tgaaggggtctgtttccatttatttggatctgactctaatcactctctgc
tctttgagcccacactccttttaagaaccagcttttagctgtgtttgtat
aaccgtgtctcatgtgttttcatatcataggtcttactcttgatctttga
atccaacatagaatcaaggacagggttttatcacacaggtacttagccag
tttatttgaatgcagatagttattttaacagagatcctattgtaaataag
tgaacttcatgtgaatcagaggaactgactttttccagtgtt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_78185052_78186181
seq2: B6Ng01-321P22.b_45_1171 (reverse)

seq1  ATGCTGATTGGCCAGAATATTGAATAAAACATGAAATGAGCATTTAAATA  50
      ||||||| ||||||||||| ||| ||||||||| ||||||||||||||  
seq2  ATGCTGA-TGGCCAGAATA-TGATTAAAACATGGAATGAGCATTTAAAAT  48

seq1  ATTGTATAATGATAATGATATTAGGTAAATATTTAAATACAAAGTAACAC  100
      | |||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AATGTATAATGATAATGATA-TAGGTAAATATTTAAATACAAAGTAACAC  97

seq1  AGCATACTACATTTTTA-TATTCTGAAATAACTGGCCAGTGGATGCTATT  149
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  AGCATACTACATTTTTATTATTCTGAAATAACTGGCCAGTGGATGCTATT  147

seq1  AATCAATGAAATGCCAGGAAATTTTACTTTCAAAATATATAGTACTGTCT  199
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATG-AATGCCAGGAAATTTTACTTTCAAAATATATAGTACTGTCT  196

seq1  AGAGTGGTAATATGAACTGGAAGTATGTCTTAGAACATGTGGACTTAAAA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTGGTAATATGAACTGGAAGTATGTCTTAGAACATGTGGACTTAAAA  246

seq1  ATGGAATTTGATTTTATCCCCAGAGTTACTTCAGCTCTGGGATTTGTTTG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGAATTTGATTTTATCCCCAGAGTTACTTCAGCTCTGGGATTTGTTTG  296

seq1  ACCAGGATGCTTAGAAAAGATGAAAGATGGTCTGACATGTTAGGAATCCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGATGCTTAGAAAAGATGAAAGATGGTCTGACATGTTAGGAATCCA  346

seq1  TAGGGTTTTTGAATTCCAGTGGTTCTGACACAATGCATCCATGGAATGAA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGTTTTTGAATTCCAGTGGTTCTGACACAATGCATCCATGGAATGAA  396

seq1  AACGTTCCTTCTTACACCTCCTAAATATCATTTTAGTAGAGATAATATAC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACGTTCCTTCTTACACCTCCTAAATATCATTTTAGTAGAGATAATATAC  446

seq1  TTAGGAAATTTCCTCAAGTATTATTTGGTATTTTTCTTTTACTCCTGACT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGAAATTTCCTCAAGTATTATTTGGTATTTTTCTTTTACTCCTGACT  496

seq1  TGTCACATAAAACATGTCCTTCCCTTTGTGAATGTATATTTTCCCTGAAC  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCACATAAAACATGTCCTTCCCTTTGTGAATGTATATTTTCCCTGAAC  546

seq1  GCCAGTTCTCTGAAAAGCTGCATTCTGCATACTAGTCCAATCTCTAGTAT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGTTCTCTGAAAAGCTGCATTCTGCATACTAGTCCAATCTCTAGTAT  596

seq1  GATACAAGCTTAGAAAGCAATGGACACGGTTCCAGTTGGGACTCCAAGTC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAAGCTTAGAAAGCAATGGACACGGTTCCAGTTGGGACTCCAAGTC  646

seq1  TCCACACTCAGGATTGAAATACATACTCTACATCATTTCTTTGCCTTCAG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACACTCAGGATTGAAATACATACTCTACATCATTTCTTTGCCTTCAG  696

seq1  TTCTAATACTAATCTGCTGACATGGCAACATGCCTGCTCCCAGGTGACAG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTAATACTAATCTGCTGACATGGCAACATGCCTGCTCCCAGGTGACAG  746

seq1  GAGAGACACCTGGAGCACAGGTGCCTGGCAATGATGGGCTCAGAGAAATC  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGACACCTGGAGCACAGGTGCCTGGCAATGATGGGCTCAGAGAAATC  796

seq1  CTTGTTCCTGACATTTCTTCTGCAGGCCATCTCTCCTGGGTACATGCTAG  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTCCTGACATTTCTTCTGCAGGCCATCTCTCCTGGGTACATGCTAG  846

seq1  GCAGTGTGCTCTCCCTTCCTGTCTGAGGTCATGACTGAGGCTATATGTCT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGTGCTCTCCCTTCCTGTCTGAGGTCATGACTGAGGCTATATGTCT  896

seq1  TCAGAAATTTCTGCTTATCATTAAAAGCAAAATTCTCAGAATAAGGTGAC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAAATTTCTGCTTATCATTAAAAGCAAAATTCTCAGAATAAGGTGAC  946

seq1  ATTTAAAAGTAGAAACCATAATTGTTTTTGAATCTTTAGGTCTAACTCAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAAAGTAGAAACCATAATTGTTTTTGAATCTTTAGGTCTAACTCAG  996

seq1  AATTTTTTTTTAAAAAATTCTCTTTCCTGAAAGATTTTAAATATCAAAAA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTTTTTTAAAAAATTCTCTTTCCTGAAAGATTTTAAATATCAAAAA  1046

seq1  TTTAAGCTCAGATGATCTTTTCGGGAACTAGTTACTTATTATATTGCATT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAGCTCAGATGATCTTTTCGGGAACTAGTTACTTATTATATTGCATT  1096

seq1  GATATTCCACTAAACTTGGTGACATGAATTC  1130
      |||||||||||||||||||||||||||||||
seq2  GATATTCCACTAAACTTGGTGACATGAATTC  1127


seq1: chr2_78038617_78039714
seq2: B6Ng01-321P22.g_69_1160

seq1  GAATTCTCAGGAGGCAAGAAGAAAACCTAGGCACTATGGTTGGCATGTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGGAGGCAAGAAGAAAACCTAGGCACTATGGTTGGCATGTAG  50

seq1  GGAAGAGAGGACAGAGATGCTGAAAAAGGGATGTGCTTAATGAAGCTAAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAGAGAGGACAGAGATGCTGAAAAAGGGATGTGCTTAATGAAGCTAAG  100

seq1  AGATGATAGGAAATCAGTGTGCATCAGCAAGGGGAACAATCAGCAGGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGATAGGAAATCAGTGTGCATCAGCAAGGGGAACAATCAGCAGGAGC  150

seq1  TACAGACAGTAGGCGTGGGAGATCAAGGCAATGTGTTTGCGCTTGGTTCC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGACAGTAGGCGTGGGAGATCAAGGCAATGTGTTTGCGCTTGGTTCC  200

seq1  ATGGACATTGGAAAGTCTTGGAAGAACACAGAGAAGCAAGAATCATTATC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGACATTGGAAAGTCTTGGAAGAACACAGAGAAGCAAGAATCATTATC  250

seq1  TGATTTACATATAACACTTTGCTGGTAAAGGCTAGTTAGCTATCAGGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTTACATATAACACTTTGCTGGTAAAGGCTAGTTAGCTATCAGGGGA  300

seq1  AGGAACAAAAGCAAAAGGTCATGACAAGGTGACAGCACTGAACTGTCTAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAACAAAAGCAAAAGGTCATGACAAGGTGACAGCACTGAACTGTCTAC  350

seq1  ATTCTAGAGGTGGTACAACCTGGGAGAATGGAGCTGATAAATGAGGTAGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCTAGAGGTGGTACAACCTGGGAGAATGGAGCTGATAAATGAGGTAGA  400

seq1  TTAAACTCTCTTGCAATAGCCAATGCTAGCTGGAGCATCAGACAGTTTAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACTCTCTTGCAATAGCCAATGCTAGCTGGAGCATCAGACAGTTTAT  450

seq1  ATTGTGAGGGTTAAAAGGGGTCACATGAGTACAGAGTGCAACCACAAAGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTGAGGGTTAAAAGGGGTCACATGAGTACAGAGTGCAACCACAAAGG  500

seq1  CAAGCTGCACTTATTTGGCCACAACATCCTTTTTCATAGAGGCATATAGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGCTGCACTTATTTGGCCACAACATCCTTTTTCATAGAGGCATATAGA  550

seq1  CAAATAAAAATAACCGGTTGTAATGAATAATCTACATAAACACACTCCTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATAAAAATAACCGGTTGTAATGAATAATCTACATAAACACACTCCTA  600

seq1  TCCACTATACCTGTGAGGATCACAAAAAGCACATTCTAAGAAGAAACACA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTATACCTGTGAGGATCACAAAAAGCACATTCTAAGAAGAAACACA  650

seq1  TTCCAAAAACAATTCTGTGTTTTGAAGAAACTGAGGTCACAAGACTCTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAAAAACAATTCTGTGTTTTGAAGAAACTGAGGTCACAAGACTCTTG  700

seq1  TCTTGGTTTCTTACAAGCACTCAAAATTGTCTTCACAGGACTCCATTCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGTTTCTTACAAGCACTCAAAATTGTCTTCACAGGACTCCATTCTT  750

seq1  GGATCGTGTTCTGACACTTAACAAGTTGGGTCCCTGTAGTGGGCATCAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATCGTGTTCTGACACTTAACAAGTTGGGTCCCTGTAGTGGGCATCAAC  800

seq1  TGAAGGGGTCTGTTTCCATTTATTTGGATCTGACTCTAATCACTCTCTGC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGGGGTCTGTTTCCATTTATTTGGATCTGACTCTAATCACTCTCTGC  850

seq1  TCTTTGAGCCCACACTCCTTTTAAGAACCAGCTTTTAGCTGTGTTTGTAT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTGAGCCCACACTCCTTTTAAGAACCAGCTTTTAGCTGTGTTTGTAT  900

seq1  AACCGTGTCTCATGTGTTTTCATATCATAGGTCTTACTCTTGATCTTTGA  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCGTGTCTCATGTGTTTTCATATCATAGGTCTTACTCTTGATCTTTGA  950

seq1  ATCCAACATAGAATCAAGGACAGGGTTTTTATCACAACAGGTACTTAGCC  1000
      ||||||||||||||||||||||||| ||||||||| ||||||||||||||
seq2  ATCCAACATAGAATCAAGGACAGGG-TTTTATCAC-ACAGGTACTTAGCC  998

seq1  AAGTTTTATTTGAATGCAAGATAGTTATTTTAACAGAGATCCTATTGTAA  1050
      |   ||||||||||||| ||||||||||||||||||||||||||||||||
seq2  A--GTTTATTTGAATGC-AGATAGTTATTTTAACAGAGATCCTATTGTAA  1045

seq1  ATAAGTGAACTTCATGGTGAATTCAGAGGAACTGACTTTTT-CAGTGTT  1098
      ||||||||||||||| ||||| ||||||||||||||||||| |||||||
seq2  ATAAGTGAACTTCAT-GTGAA-TCAGAGGAACTGACTTTTTCCAGTGTT  1092


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