BAC Information

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BAC

Clone NameB6Ng01-322J13
Chromosome2 (Build37)
Map Location 143,361,241 - 143,562,642
singlet/doubletdoublet
Overlap genePcsk2
Upstream geneLOC668913, LOC668914, Kif16b, Snrpb2, Otor, LOC668915, LOC668916
Downstream geneBfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322J13.bB6Ng01-322J13.g
ACCGA111398GA111399
length1751,129
definitionB6Ng01-322J13.b B6Ng01-322J13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,361,241 - 143,361,415)(143,561,505 - 143,562,642)
sequence
tttaatgttttgtcaccatagcaaagacttttaaaaatcagaaaaggaaa
gggaagaagtggaacacaaggtgactttcaagtgcttgcatttccaagtg
atgctgttgagcatctaagtctaagtttatactcgtgtgtgtgtgtgtgt
gtgtgtgtgtgtgtgtgtgtgtgtg
gaattctttcatctgaggttgatagaataccttttgggcctaacatgaca
aacaggctcccaccaaggaagctcttttgctttctaaactagtttctttg
ttctctgttggttatatcattctgtatggaagtaggatttctttaaatta
aattttgaatggagagatggctcagcatttaatagcaagtacttttctcg
aagaggacccaaggttggctcccaaaactcaacgttggtcagctcaccac
caaccttgactccagctccagggctactgataacctcttctgacctctgt
gggcgaccacactcacctacacaaagtctcacacaaacatgcatgcataa
acataattaaacctggaaaaaaaaactaaggctgaactctagatgagaca
aataatactggtgactgaatgtctcagaaggtgaaatcttggactccccc
tccctcttttttcattcctggaagctctgaagcagcagctcctgggttta
gagtttgaaactcattggctgggaaggaatctctagaatgtgcactagtg
tgcatgtgacctctagaatgtgcactaactagtgtgcatgtgagctctag
aatgtgcactagtgtgcatatgatgaaagcttggtccgaaggctgtgctg
ctttcaggaggaagtggaaatctttaacaggtggtgcctcccgaaagtcc
caggcatgtccatgaggagcactgtaggaccctcctccctccttctcttt
cacctccagtctatgaggtgaaaagtttagatgtgcctcctctacataag
ctccaaaggaactgtcagaaacctctagaaccatgtgcctctcttaagtt
gatcatgtcaggtatcagtttatagtagcaggaagctgactaatgctgat
gcttagctgtgggccctccccactttaaatagtctgggattctagggaag
gactgtagctcctgtaaaacaccccttcatccttattatgtgacatgtct
ctgctagtgctcccttggatacactttccccaaacttggtatcctcttgt
ctacaggcaagcatccgcctcagtgccttgttgcgtttataatcagccca
ctgtgtcaagttggcttttctactggaat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_143361241_143361415
seq2: B6Ng01-322J13.b_48_222

seq1  TTTAATGTTTTGTCACCATAGCAAAGACTTTTAAAAATCAGAAAAGGAAA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAATGTTTTGTCACCATAGCAAAGACTTTTAAAAATCAGAAAAGGAAA  50

seq1  GGGAAGAAGTGGAACACAAGGTGACTTTCAAGTGCTTGCATTTCCAAGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAAGAAGTGGAACACAAGGTGACTTTCAAGTGCTTGCATTTCCAAGTG  100

seq1  ATGCTGTTGAGCATCTAAGTCTAAGTTTATACTCGTGTGTGTGTGTGTGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTGTTGAGCATCTAAGTCTAAGTTTATACTCGTGTGTGTGTGTGTGT  150

seq1  GTGTGTGTGTGTGTGTGTGTGTGTG  175
      |||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTGTG  175

seq1: chr2_143561505_143562642
seq2: B6Ng01-322J13.g_66_1194 (reverse)

seq1  ATTCCAAGTAGAAAAGCAACCCTGACACAGTGGGGCTGATTATAAACGCC  50
      ||||| ||||||||||| | | ||||||||| |||||||||||||||| |
seq2  ATTCC-AGTAGAAAAGCCAACTTGACACAGT-GGGCTGATTATAAACG-C  47

seq1  ACCAGGGCACCTGAAGCCGATGCTTGCCTGGTAGACAAGAAGGATTACCA  100
      | || |||| |||| || ||||||||||| ||||||||| |||| |||||
seq2  AACAAGGCA-CTGAGGCGGATGCTTGCCT-GTAGACAAG-AGGA-TACCA  93

seq1  AGTTTGGGG-AAGTGTTAACCAAGGGAGCACTTAGCAGAGACATTGTCAC  149
      ||||||||| ||||| || |||||||||||| ||||||||||| ||||||
seq2  AGTTTGGGGAAAGTG-TATCCAAGGGAGCAC-TAGCAGAGACA-TGTCAC  140

seq1  ATAATAAGGATGAAGGGGTGTTTTTACAGGAGCTACAGTCCTTCCCTAGA  199
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  ATAATAAGGATGAAGGGGTG-TTTTACAGGAGCTACAGTCCTTCCCTAGA  189

seq1  ATCCCAGACTATTTAAAGTGGGGAGGGCCCACAGCTAAGCATCAGCATTA  249
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCCCAGACTATTTAAAGTGGGGAGGGCCCACAGCTAAGCATCAGCATTA  239

seq1  GTCAGCTTCCTGCTACTAT-AACTGATACCTGACATGATCAACTTAAGAG  298
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  GTCAGCTTCCTGCTACTATAAACTGATACCTGACATGATCAACTTAAGAG  289

seq1  AGGCACATGGTTCTAGAGGTTTCTGACAGTTCCTTTGGAGCTTATGTAGA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCACATGGTTCTAGAGGTTTCTGACAGTTCCTTTGGAGCTTATGTAGA  339

seq1  GGAGGCACATCTAAACTTTTCACCTCATAGACTGGAGGTGAAAGAGAAGG  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGGCACATCTAAACTTTTCACCTCATAGACTGGAGGTGAAAGAGAAGG  389

seq1  AGGGAGGAGGGTCCTACAGTGCTCCTCATGGACATGCCTGGGACTTTCGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGAGGAGGGTCCTACAGTGCTCCTCATGGACATGCCTGGGACTTTCGG  439

seq1  GAGGCACCACCTGTTAAAGATTTCCACTTCCTCCTGAAAGCAGCACAGCC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGCACCACCTGTTAAAGATTTCCACTTCCTCCTGAAAGCAGCACAGCC  489

seq1  TTCGGACCAAGCTTTCATCATATGCACACTAGTGCACATTCTAGAGCTCA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCGGACCAAGCTTTCATCATATGCACACTAGTGCACATTCTAGAGCTCA  539

seq1  CATGCACACTAGTTAGTGCACATTCTAGAGGTCACATGCACACTAGTGCA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGCACACTAGTTAGTGCACATTCTAGAGGTCACATGCACACTAGTGCA  589

seq1  CATTCTAGAGATTCCTTCCCAGCCAATGAGTTTCAAACTCTAAACCCAGG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCTAGAGATTCCTTCCCAGCCAATGAGTTTCAAACTCTAAACCCAGG  639

seq1  AGCTGCTGCTTCAGAGCTTCCAGGAATGAAAAAAGAGGGAGGGGGAGTCC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTGCTTCAGAGCTTCCAGGAATGAAAAAAGAGGGAGGGGGAGTCC  689

seq1  AAGATTTCACCTTCTGAGACATTCAGTCACCAGTATTATTTGTCTCATCT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTTCACCTTCTGAGACATTCAGTCACCAGTATTATTTGTCTCATCT  739

seq1  AGAGTTCAGCCTTAGTTTTTTTTTCCAGGTTTAATTATGTTTATGCATGC  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTCAGCCTTAGTTTTTTTTTCCAGGTTTAATTATGTTTATGCATGC  789

seq1  ATGTTTGTGTGAGACTTTGTGTAGGTGAGTGTGGTCGCCCACAGAGGTCA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTGTGTGAGACTTTGTGTAGGTGAGTGTGGTCGCCCACAGAGGTCA  839

seq1  GAAGAGGTTATCAGTAGCCCTGGAGCTGGAGTCAAGGTTGGTGGTGAGCT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGAGGTTATCAGTAGCCCTGGAGCTGGAGTCAAGGTTGGTGGTGAGCT  889

seq1  GACCAACGTTGAGTTTTGGGAGCCAACCTTGGGTCCTCTTCGAGAAAAGT  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACCAACGTTGAGTTTTGGGAGCCAACCTTGGGTCCTCTTCGAGAAAAGT  939

seq1  ACTTGCTATTAAATGCTGAGCCATCTCTCCATTCAAAATTTAATTTAAAG  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGCTATTAAATGCTGAGCCATCTCTCCATTCAAAATTTAATTTAAAG  989

seq1  AAATCCTACTTCCATACAGAATGATATAACCAACAGAGAACAAAGAAACT  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCCTACTTCCATACAGAATGATATAACCAACAGAGAACAAAGAAACT  1039

seq1  AGTTTAGAAAGCAAAAGAGCTTCCTTGGTGGGAGCCTGTTTGTCATGTTA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTAGAAAGCAAAAGAGCTTCCTTGGTGGGAGCCTGTTTGTCATGTTA  1089

seq1  GGCCCAAAAGGTATTCTATCAACCTCAGATGAAAGAATTC  1138
      ||||||||||||||||||||||||||||||||||||||||
seq2  GGCCCAAAAGGTATTCTATCAACCTCAGATGAAAGAATTC  1129