BAC Information

Click to search

BAC

Clone NameB6Ng01-322O21
Chromosome2 (Build37)
Map Location 164,445,143 - 164,605,909
singlet/doubletdoublet
Overlap geneWfdc16, OTTMUSG00000001088, Wfdc10, LOC629761, Wfdc13, Spint4, OTTMUSG00000016293, Wfdc3, Dnttip1, Ube2c, Tnnc2
Upstream geneSerinc3, Pkig, Ada, Wisp2, Kcnk15, Rims4, Ywhab, LOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b
Downstream geneSnx21, Acot8, Zswim3, Zswim1, 1700020C07Rik, Neurl2, Ctsa, Pltp, F730014I05Rik, Zfp335, LOC629777, Mmp9, Slc12a5, Ncoa5, Cd40, Cdh22, Slc35c2, Elmo2, Gm1008, Zfp334, 4833422F24Rik, Slc13a3, 2810408M09Rik, Slc2a10, Eya2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-322O21.bB6Ng01-322O21.g
ACCGA111643GA111644
length415493
definitionB6Ng01-322O21.b B6Ng01-322O21.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(164,605,489 - 164,605,909)(164,445,143 - 164,445,635)
sequence
ctctatggactgtatggcttctgctgtagtcagatggggataataatagt
taccttcatggaatgaatagtagatgagatcacggaatcaagatgctcag
cgtagtgtgggcacaggttgtgggagttcaatacatggtgtcactagctc
aatgctacgcatcacttcccctaggcacccagcacaagctaggtgactta
gtcatctgggctcatggttgccatttctatcttggaggaaggtgtgcctt
gagggccctcaccatccgcccacattcccgtggctcagggggagaacaga
gtcgggaatgaatgaattttggacgtcaagcctgggctcttcccattctg
ctgtgccctccttctggacatcctcccccattttgaaacacatgtgctgg
agtggggtgggggga
gaattctgttttcctttcatcttagggacttacattttttcctcttaatg
ttctgatgatccactcaccatgaaatcgtgtcttgtcagagtggtgcaca
gtggtgcacagtggtgcacgcagtggtgcacagtggtgcacacagtggtg
cacaccgtggtcacaatggtgcacatgctgaggcaagtcccatggagcac
acgtgacagttggacagtataagtaggactcaacggacaatgatggaggc
tgcgctaggcttgcttatagagctagctgtgcaacactcgtgggtctctc
cgagtgggccattcaatcctcaagagtatttacactgtctatagtttttt
gttttttgtttttgtttttgtttttttttgctattgacttctagtttact
tcattatgatcagatagaatgggaaaacgtatttcaactctctccctccc
tctccctctccctctccctctccctctccctctccctctccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_164605489_164605909
seq2: B6Ng01-322O21.b_42_462 (reverse)

seq1  TCCCCCCACCCCACTCCAGCACATGTGTTTCAAAATGGGGGAGGATGTCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCCCCCACCCCACTCCAGCACATGTGTTTCAAAATGGGGGAGGATGTCC  50

seq1  AGAAGGAGGGCACAGCAGAATGGGAAGAGCCCAGGCTTGACGTCCAAAAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGGAGGGCACAGCAGAATGGGAAGAGCCCAGGCTTGACGTCCAAAAT  100

seq1  TCATTCATTCCCGACTCTGTTCTCCCCCTGAGCCACGGGAATGTGGGCGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCATTCCCGACTCTGTTCTCCCCCTGAGCCACGGGAATGTGGGCGG  150

seq1  ATGGTGAGGGCCCTCAAGGCACACCTTCCTCCAAGATAGAAATGGCAACC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGTGAGGGCCCTCAAGGCACACCTTCCTCCAAGATAGAAATGGCAACC  200

seq1  ATGAGCCCAGATGACTAAGTCACCTAGCTTGTGCTGGGTGCCTAGGGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGCCCAGATGACTAAGTCACCTAGCTTGTGCTGGGTGCCTAGGGGAA  250

seq1  GTGATGCGTAGCATTGAGCTAGTGACACCATGTATTGAACTCCCACAACC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGATGCGTAGCATTGAGCTAGTGACACCATGTATTGAACTCCCACAACC  300

seq1  TGTGCCCACACTACGCTGAGCATCTTGATTCCGTGATCTCATCTACTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGCCCACACTACGCTGAGCATCTTGATTCCGTGATCTCATCTACTATT  350

seq1  CATTCCATGAAGGTAACTATTATTATCCCCATCTGACTACAGCAGAAGCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTCCATGAAGGTAACTATTATTATCCCCATCTGACTACAGCAGAAGCC  400

seq1  ATACAGTCCATAGAGGAATTC  421
      |||||||||||||||||||||
seq2  ATACAGTCCATAGAGGAATTC  421

seq1: chr2_164445143_164445635
seq2: B6Ng01-322O21.g_66_558

seq1  GAATTCTGTTTTCCTTTCATCTTAGGGACTTACATTTTTTCCTCTTAATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTTTTCCTTTCATCTTAGGGACTTACATTTTTTCCTCTTAATG  50

seq1  TTCTGATGATCCACTCACCATGAAATCGTGTCTTGTCAGAGTGGTGCACA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATGATCCACTCACCATGAAATCGTGTCTTGTCAGAGTGGTGCACA  100

seq1  GTGGTGCACAGTGGTGCACGCAGTGGTGCACAGTGGTGCACACAGTGGTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGTGCACAGTGGTGCACGCAGTGGTGCACAGTGGTGCACACAGTGGTG  150

seq1  CACACCGTGGTCACAATGGTGCACATGCTGAGGCAAGTCCCATGGAGCAC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACCGTGGTCACAATGGTGCACATGCTGAGGCAAGTCCCATGGAGCAC  200

seq1  ACGTGACAGTTGGACAGTATAAGTAGGACTCAACGGACAATGATGGAGGC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTGACAGTTGGACAGTATAAGTAGGACTCAACGGACAATGATGGAGGC  250

seq1  TGCGCTAGGCTTGCTTATAGAGCTAGCTGTGCAACACTCGTGGGTCTCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCGCTAGGCTTGCTTATAGAGCTAGCTGTGCAACACTCGTGGGTCTCTC  300

seq1  CGAGTGGGCCATTCAATCCTCAAGAGTATTTACACTGTCTATAGTTTTTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGAGTGGGCCATTCAATCCTCAAGAGTATTTACACTGTCTATAGTTTTTT  350

seq1  GTTTTTTGTTTTTGTTTTTGTTTTTTTTTGCTATTGACTTCTAGTTTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTTTGTTTTTGTTTTTGTTTTTTTTTGCTATTGACTTCTAGTTTACT  400

seq1  TCATTATGATCAGATAGAATGGGAAAACGTATTTCAACTCTCTCCCTCCC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTATGATCAGATAGAATGGGAAAACGTATTTCAACTCTCTCCCTCCC  450

seq1  TCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCT  493
      |||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCCT  493