BAC Information

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BAC

Clone NameB6Ng01-323K07
Chromosome2 (Build37)
Map Location 143,467,745 - 143,610,768
singlet/doubletdoublet
Overlap genePcsk2
Upstream geneKif16b, Snrpb2, Otor, LOC668915, LOC668916
Downstream geneBfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-323K07.bB6Ng01-323K07.g
ACCGA112169GA112170
length1,0181,137
definitionB6Ng01-323K07.b B6Ng01-323K07.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,609,755 - 143,610,768)(143,467,745 - 143,468,880)
sequence
gaattcatttgctgagagcttcttggatactaggaattggaatagggtct
tggcccaggagtgctctgatccctgagcctggctcatgtcctacctaggt
gacgcctgccctgtatattctctaggaattctttaccatgtgcctcttac
actactaaacccaactctgtgcctatcttccacaggatctaaacatagag
gtctatagggatgtagacccacttccacttgaccctgccactccatccac
tctatatcaataccacttcaccctctatatcctacctcatgggtggacca
gggccttgtggtgacaggaaagtctttaccttgttcacgccatcagccat
ggcctggagtgtgagctctcggggcccatcaaccgtcttcccattgtctg
tggggccccagcttgcactgtagatgtcgatcagttgaggcatgtggctg
atggaggaggcttcgatgatgtctgtcataaagggctggtccagcatccg
gatccctgtgcgcaggtgggacaagaaacaagactttggcaccctagctc
tcagaagacatgggggtagagaaaagtttgggttctgggaggagctgggg
accttcagtgctttcagaacaccatggagtctgagggtcaaaaatggttt
tcagagccgggtggtggtggcgcatgcctttaattccagcacttgggagg
cagaggcaggtggatttctgagttcgaggccagcctggtctacaaagtga
gttccagaacagccagggctacacagagaaaccctgtctcgaaaacccct
ctccccccaaaaaagaaaggtgctcagatcaccttactcactcctcttta
gaccggactcatgtctttccttgaggcacatttattctgtaaacaaaaat
tacttgagttcttaatggggaaagacatgctgtgcaaggttatcccttaa
gtttctaagtgggaacctagcctccagcagtgcaacaatttgatcactgt
tgatggggggaggggggg
gaattctgtcccgaaagaaagaaagaaagaaagaaagaaagaaagaaaga
aagaaagaaagaaagaaagaaagaaagaaagaaagaaggaaagagcactt
cagttgacaaacagacaggacagcttggcaatttatggggtagctgactt
gctctaactatcctgtttattttgagttccactcagccccaacttagtaa
tatccaggggcacacaaagccaagcttgaaaatgatgccgggcatctaga
ttcaaactcagaatccatgtgggaaccaccaagccaggtagatttctcca
agcccatgagaaactatgtgtgccagacacagtggaatcccgtgggtttc
gaaggcatagattaaacaggtggtacctagcttgtgctctgagtgactca
atggcttgtgctccgagaggacgaaactaaagctcgggtgtgtgcaagtg
gccaaagtggggcttggcttggtttctggcttggccaggaaggtgagttt
gtttgttctcttagtgtgcattaagccagataaacccattaataccaaat
gttacttctgagtgattttttaaaaaattacatctctagtaagaatattg
atctgctctattgattttttttaaagagtctttccaaatttgcagtatct
gctagtcagtgaccttaaaaattagattttcacagtgttatctttgccac
ttttgtaatcagagcttcttaaatgtttactaagataagagtggttcctt
aatatgtccaatgttcctgttgagttctcagggttgctttttggaacatg
tagattattaaagtacactggtagatatcaaaatagacatcaggggaact
ttcttacagagatagcaagatctctgtaagagatgctagattacaccctc
ccagccctttctaaaataagctagtgaagaaagccaccagactactctca
gagtcctccttgaaagtttgtttatctactcagctcatcacagctaacaa
atttagtgctctgaagtccctgtaagtttaatccagtgtccacttgctct
ggtatacaataaattagcaacccccacatactgctgctttatgtggtcaa
ccttgaaatccagcctgaagttatcacagagaaagga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_143609755_143610768
seq2: B6Ng01-323K07.b_46_1063 (reverse)

seq1  CCCCCCCT-CCCCCATCAACAGTGATC-AATTG-TGCACTGCTGGAGGCT  47
      |||||||| |||||||||||||||||| ||||| ||||||||||||||||
seq2  CCCCCCCTCCCCCCATCAACAGTGATCAAATTGTTGCACTGCTGGAGGCT  50

seq1  AGGTTCCCACTTAGAAACTT-AGGGATAACCTTGCACAGCATGTCTTTCC  96
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  AGGTTCCCACTTAGAAACTTAAGGGATAACCTTGCACAGCATGTCTTTCC  100

seq1  CCATTAAGAACTCAAGTAATTTTTGTTTACAGAATAAATGTGCCTCAAGG  146
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTAAGAACTCAAGTAATTTTTGTTTACAGAATAAATGTGCCTCAAGG  150

seq1  AAAGACATGAGTCCGGTCTAAAGAGGAGTGAGTAAGGTGATCTGAGCACC  196
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGACATGAGTCCGGTCTAAAGAGGAGTGAGTAAGGTGATCTGAGCACC  200

seq1  TTTCTTTTTTGGGGGGAGAGGGGTTTTCGAGACAGGGTTTCTCTGTGTAG  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTTTTGGGGGGAGAGGGGTTTTCGAGACAGGGTTTCTCTGTGTAG  250

seq1  CCCTGGCTGTTCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCTGTTCTGGAACTCACTTTGTAGACCAGGCTGGCCTCGAACTCA  300

seq1  GAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGAATTAAAGGCATGCGCC  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATCCACCTGCCTCTGCCTCCCAAGTGCTGGAATTAAAGGCATGCGCC  350

seq1  ACCACCACCCGGCTCTGAAAACCATTTTTGACCCTCAGACTCCATGGTGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCACCACCCGGCTCTGAAAACCATTTTTGACCCTCAGACTCCATGGTGT  400

seq1  TCTGAAAGCACTGAAGGTCCCCAGCTCCTCCCAGAACCCAAACTTTTCTC  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAAAGCACTGAAGGTCCCCAGCTCCTCCCAGAACCCAAACTTTTCTC  450

seq1  TACCCCCATGTCTTCTGAGAGCTAGGGTGCCAAAGTCTTGTTTCTTGTCC  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCCCCATGTCTTCTGAGAGCTAGGGTGCCAAAGTCTTGTTTCTTGTCC  500

seq1  CACCTGCGCACAGGGATCCGGATGCTGGACCAGCCCTTTATGACAGACAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGCGCACAGGGATCCGGATGCTGGACCAGCCCTTTATGACAGACAT  550

seq1  CATCGAAGCCTCCTCCATCAGCCACATGCCTCAACTGATCGACATCTACA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGAAGCCTCCTCCATCAGCCACATGCCTCAACTGATCGACATCTACA  600

seq1  GTGCAAGCTGGGGCCCCACAGACAATGGGAAGACGGTTGATGGGCCCCGA  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGCAAGCTGGGGCCCCACAGACAATGGGAAGACGGTTGATGGGCCCCGA  650

seq1  GAGCTCACACTCCAGGCCATGGCTGATGGCGTGAACAAGGTAAAGACTTT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCTCACACTCCAGGCCATGGCTGATGGCGTGAACAAGGTAAAGACTTT  700

seq1  CCTGTCACCACAAGGCCCTGGTCCACCCATGAGGTAGGATATAGAGGGTG  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCACCACAAGGCCCTGGTCCACCCATGAGGTAGGATATAGAGGGTG  750

seq1  AAGTGGTATTGATATAGAGTGGATGGAGTGGCAGGGTCAAGTGGAAGTGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGTATTGATATAGAGTGGATGGAGTGGCAGGGTCAAGTGGAAGTGG  800

seq1  GTCTACATCCCTATAGACCTCTATGTTTAGATCCTGTGGAAGATAGGCAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTACATCCCTATAGACCTCTATGTTTAGATCCTGTGGAAGATAGGCAC  850

seq1  AGAGTTGGGTTTAGTAGTGTAAGAGGCACATGGTAAAGAATTCCTAGAGA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTTGGGTTTAGTAGTGTAAGAGGCACATGGTAAAGAATTCCTAGAGA  900

seq1  ATATACAGGGCAGGCGTCACCTAGGTAGGACATGAGCCAGGCTCAGGGAT  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATACAGGGCAGGCGTCACCTAGGTAGGACATGAGCCAGGCTCAGGGAT  950

seq1  CAGAGCACTCCTGGGCCAAGACCCTATTCCAATTCCTAGTATCCAAGAAG  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGCACTCCTGGGCCAAGACCCTATTCCAATTCCTAGTATCCAAGAAG  1000

seq1  CTCTCAGCAAATGAATTC  1014
      ||||||||||||||||||
seq2  CTCTCAGCAAATGAATTC  1018

seq1: chr2_143467745_143468880
seq2: B6Ng01-323K07.g_67_1203

seq1  GAATTCTGTCCCGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTCCCGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGA  50

seq1  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAGGAAAGAGCACTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAGGAAAGAGCACTT  100

seq1  CAGTTGACAAACAGACAGGACAGCTTGGCAATTTATGGGGTAGCTGACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTGACAAACAGACAGGACAGCTTGGCAATTTATGGGGTAGCTGACTT  150

seq1  GCTCTAACTATCCTGTTTATTTTGAGTTCCACTCAGCCCCAACTTAGTAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAACTATCCTGTTTATTTTGAGTTCCACTCAGCCCCAACTTAGTAA  200

seq1  TATCCAGGGGCACACAAAGCCAAGCTTGAAAATGATGCCGGGCATCTAGA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCCAGGGGCACACAAAGCCAAGCTTGAAAATGATGCCGGGCATCTAGA  250

seq1  TTCAAACTCAGAATCCATGTGGGAACCACCAAGCCAGGTAGATTTCTCCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAAACTCAGAATCCATGTGGGAACCACCAAGCCAGGTAGATTTCTCCA  300

seq1  AGCCCATGAGAAACTATGTGTGCCAGACACAGTGGAATCCCGTGGGTTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCCATGAGAAACTATGTGTGCCAGACACAGTGGAATCCCGTGGGTTTC  350

seq1  GAAGGCATAGATTAAACAGGTGGTACCTAGCTTGTGCTCTGAGTGACTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCATAGATTAAACAGGTGGTACCTAGCTTGTGCTCTGAGTGACTCA  400

seq1  ATGGCTTGTGCTCCGAGAGGACGAAACTAAAGCTCGGGTGTGTGCAAGTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGGCTTGTGCTCCGAGAGGACGAAACTAAAGCTCGGGTGTGTGCAAGTG  450

seq1  GCCAAAGTGGGGCTTGGCTTGGTTTCTGGCTTGGCCAGGAAGGTGAGTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAAAGTGGGGCTTGGCTTGGTTTCTGGCTTGGCCAGGAAGGTGAGTTT  500

seq1  GTTTGTTCTCTTAGTGTGCATTAAGCCAGATAAACCCATTAATACCAAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGTTCTCTTAGTGTGCATTAAGCCAGATAAACCCATTAATACCAAAT  550

seq1  GTTACTTCTGAGTGATTTTTTAAAAAATTACATCTCTAGTAAGAATATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTACTTCTGAGTGATTTTTTAAAAAATTACATCTCTAGTAAGAATATTG  600

seq1  ATCTGCTCTATTGATTTTTTTTAAAGAGTCTTTCCAAATTTGCAGTATCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCTCTATTGATTTTTTTTAAAGAGTCTTTCCAAATTTGCAGTATCT  650

seq1  GCTAGTCAGTGACCTTAAAAATTAGATTTTCACAGTGTTATCTTTGCCAC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAGTCAGTGACCTTAAAAATTAGATTTTCACAGTGTTATCTTTGCCAC  700

seq1  TTTTGTAATCAGAGCTTCTTAAATGTTTACTAAGATAAGAGTGGTTCCTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGTAATCAGAGCTTCTTAAATGTTTACTAAGATAAGAGTGGTTCCTT  750

seq1  AATATGTCCAATGTTCCTGTTGAGTTCTCAGGGTTGCTTTTTGGAACATG  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATATGTCCAATGTTCCTGTTGAGTTCTCAGGGTTGCTTTTTGGAACATG  800

seq1  TAGATTATTAAAGTACACTGGTAGATATCAAAATAGACATCAGGGGGAAC  850
      |||||||||||||||||||||||||||||||||||||||||| |||||||
seq2  TAGATTATTAAAGTACACTGGTAGATATCAAAATAGACATCA-GGGGAAC  849

seq1  TTTCTTACAGAGATAGCAAGATCTCTGTAAGAGATGCTAGA-TACACCCT  899
      ||||||||||||||||||||||||||||||||||||||||| ||||||||
seq2  TTTCTTACAGAGATAGCAAGATCTCTGTAAGAGATGCTAGATTACACCCT  899

seq1  CCCAGCCCTTTCTAAAATAAGCTAGTGAAGAAAGCCACCAGACTACTCTC  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGCCCTTTCTAAAATAAGCTAGTGAAGAAAGCCACCAGACTACTCTC  949

seq1  AGAGT-CTCCCTGAAAGTTTGTTTATCTACTCAGCCTCATCAACAGCT-A  997
      ||||| |||| ||||||||||||||||||||||| |||||| |||||| |
seq2  AGAGTCCTCCTTGAAAGTTTGTTTATCTACTCAG-CTCATC-ACAGCTAA  997

seq1  CAAATTTAGTGGCTTCTGAAGTCCCTGTAAGGTTTAATCCAGTGT-CACT  1046
      |||||||||||   |||||||||||||||| |||||||||||||| ||||
seq2  CAAATTTAGTG--CTCTGAAGTCCCTGTAA-GTTTAATCCAGTGTCCACT  1044

seq1  TGCTCTGGTATAC-ATAAATTAGCAACCCCACCATACTGGCTGGCTTTAT  1095
      ||||||||||||| ||||||||||||||||  |||||| ||| |||||||
seq2  TGCTCTGGTATACAATAAATTAGCAACCCCCACATACT-GCT-GCTTTAT  1092

seq1  GT-GTCAA-CTTG--ATACAAGCTGGAGTTATCACAGAGAAAGGA  1136
      || ||||| ||||  || ||  ||| |||||||||||||||||||
seq2  GTGGTCAACCTTGAAATCCAGCCTGAAGTTATCACAGAGAAAGGA  1137