BAC Information

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BAC

Clone NameB6Ng01-325G16
Chromosome2 (Build37)
Map Location 130,870,016 - 130,871,087
singlet/doubletsinglet
Overlap genenone
Upstream geneTgm3, AU015228, LOC100043438, Tgm6, Snrpb, Tmc2, Nol5a, Idh3b, Ebf4, LOC668899, Cpxm1, LOC100043446, 1700020A23Rik, 4933425O20Rik, A930025D01Rik, Vps16, Ptpra, Mrps26, Oxt, Avp, 1700012O15Rik, Ubox5, Fastkd5, Prosapip1, 2600009E05Rik, Itpa, Slc4a11, 4930402H24Rik, LOC100043766, C030014O09Rik, LOC627316, Atrn, LOC100043768, Gfra4
Downstream geneAdam33, Siglec1, LOC100043457, Hspa12b, 1700037H04Rik, Spef1, Cenpb, Cdc25b, 2310035K24Rik, D430028G21Rik, Pank2, Rnf24, LOC100043463, Smox, Adra1d, Lamr1-ps1, Prnp, Prnd, Rassf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-325G16.bB6Ng01-325G16.g
ACCGA113481GA113482
length1,0611,230
definitionB6Ng01-325G16.b B6Ng01-325G16.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattctcactagttatttcctggactatttctactgagttagtcttaca
ttttcttctggtcagattaagacagcattgtaaagcagattttatgtgtc
tgtatgcatgttacccgaggccagaagagggcaccagctctcggaaggct
ggttgctggaaaccaaactctcttcctctggaagagctgggcaggtgtgg
agggggcagggcagggcagggcagggcaggccagagtgggcttgttgggg
gatggttttgtgcactgttgttcagatgctgacttctttaccgcagacat
ctggttgcagtctggaagatagccatctcccgatctcaatgttgtgtaaa
cattgttttccatcacctctgattggttaataaaagagctggtcagccaa
ttagctgagcagaagagatagggagggacttccaatcccagtcatggggt
cccaaaggagaccagagagtagataaggaccaggaggaggagacggtgtg
gagaaaccacgtggagagaccaggaagattcgccatgagaaaacagccat
gagaacatacatagaccagagtgaagcagggcaagaccagagggcaagta
ccagggcatttggttgggtagtaggtagtctaattgggttaggatagata
agaatctgcccggatattagagtacacactctaatagcttgttaataaaa
atgccaggtctctgtatctttacggctcgagtgggtatagaaacactctg
cagttatttgggagcaaaaagggacatagaacgccccctcccccaagatt
actattacaggggctgaatctgtgcattgacctgggactaggcttgggga
ctggtagaaccaggaccaaggagggctacgtgcctgataaggagtcagcc
agccgtagcctgcgtcaggcaggcagaccaggacatgttggagcctgcca
ggaagagaagctggcatgaagaaaattgttcccgcgtgttcatcctatgg
aatgcgccttttgattttatagagggttattaaacagcattgagactaag
gtggattttcc
gaattcacagagatctgcctgcctcttgtctttcaagtgctgggactgtg
tgcaccaccatgtctggtgtgtgtgtgagtgtaggtaaatgaatacaggt
gctgtgcaagccatatccctctggagttggaggtacaggctattgtgagc
tgcctgaagtgggtactaggaaccaaacttgggtcctcataagattaccc
ataaccactgagccatctgaccaacaatcacaggaagtttcttacaggga
tttaaatacaggtaatttttggagatggttaaacagtctctgcaaggctt
ctctgcctcttttatgtactaggaaatgagcacagggccttaccatacta
tgcaagcattctcccccaggctatattcccatactcaatcattttttaag
acttttcagataatgttccactaatttgcttagtctgcctttaaactcac
tctgcagccctgggagatcttcagcttttgaaccttgtgcctcagcctct
cacgtagcagggggattataggccaaatggcaccaggccccaggaaagtt
aatgtttttatatctaacactggagtttcaagtccaaagattatgagttg
ggaagggaagatggacattaaatggaacacagtggaatccaagggcagaa
gctcctgaacaaagtgaacccggtgtcagctcttactgcttctggtcctc
ctgcgcgtgaactgcagaagcagcggcggcggccccctgggtcagctgcc
ccaggagtcagaggagaatcaggaaaatacagagtccttgtaggcatatc
tgctaatctatgtcagtgaggtaagttagcagatcaacaaagtgtgtggg
tgacagatctcttccttggagcttgtaaatgtcaaattctgtattgctgc
tattttcttccaatctttaaatctcatgcaaaaatgtctgttgtagcccg
tccttattcaaaacatatgtggaaggaaatttgaaaatgctcttcatacg
gagctagtagcactttataaagctacacaggctataataccagaaaaccc
tagatttattcttagagaaatacatagtgcattatccaagaaacgcactt
aatccaaggtgaaaggtttattttttgtatcaggattctttgctcaattt
gtcttagattctattttggcatcatcagccttgccgttgtcacactgtaa
tccacgtggtatacacacaacgtggcgtta
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_130870016_130871087
seq2: B6Ng01-325G16.b_42_1102

seq1  GAATTCTCACTAGTTATTTCCTGGACTATTTCTACTGAGTTAGTCTTACA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCACTAGTTATTTCCTGGACTATTTCTACTGAGTTAGTCTTACA  50

seq1  TTTTCTTCTGGTCAGATTAAGACAGCATTGTAAAGCAGATTTTATGTGTC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCTTCTGGTCAGATTAAGACAGCATTGTAAAGCAGATTTTATGTGTC  100

seq1  TGTATGCATGTTACCCGAGGCCAGAAGAGGGCACCAGCTCTCGGAAGGCT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATGCATGTTACCCGAGGCCAGAAGAGGGCACCAGCTCTCGGAAGGCT  150

seq1  GGTTGCTGGAAACCAAACTCTCTTCCTCTGGAAGAGCTGGGCAGGTGTGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTGCTGGAAACCAAACTCTCTTCCTCTGGAAGAGCTGGGCAGGTGTGG  200

seq1  AGGGGGCAGGGCAGGGCAGGGCAGGGCAGGCCAGAGTGGGCTTGTTGGGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGGGCAGGGCAGGGCAGGGCAGGGCAGGCCAGAGTGGGCTTGTTGGGG  250

seq1  GATGGTTTTGTGCACTGTTGTTCAGATGCTGACTTCTTTACCGCAGACAT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTTTTGTGCACTGTTGTTCAGATGCTGACTTCTTTACCGCAGACAT  300

seq1  CTGGTTGCAGTCTGGAAGATAGCCATCTCCCGATCTCAATGTTGTGTAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTGCAGTCTGGAAGATAGCCATCTCCCGATCTCAATGTTGTGTAAA  350

seq1  CATTGTTTTCCATCACCTCTGATTGGTTAATAAAAGAGCTGGTCAGCCAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGTTTTCCATCACCTCTGATTGGTTAATAAAAGAGCTGGTCAGCCAA  400

seq1  TTAGCTGAGCAGAAGAGATAGGGAGGGACTTCCAATCCCAGTCATGGGGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGCTGAGCAGAAGAGATAGGGAGGGACTTCCAATCCCAGTCATGGGGT  450

seq1  CCCAAAGGAGACCAGAGAGTAGATAAGGACCAGGAGGAGGAGACGGTGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAAAGGAGACCAGAGAGTAGATAAGGACCAGGAGGAGGAGACGGTGTG  500

seq1  GAGAAACCACGTGGAGAGACCAGGAAGATTCGCCATGAGAAAACAGCCAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAACCACGTGGAGAGACCAGGAAGATTCGCCATGAGAAAACAGCCAT  550

seq1  GAGAACATACATAGACCAGAGTGAAGCAGGGCAAGACCAGAGGGCAAGTA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACATACATAGACCAGAGTGAAGCAGGGCAAGACCAGAGGGCAAGTA  600

seq1  CCAGGGCATTTGGTTGGGTAGTAGGTAGTCTAATTGGGTTAGGATAGATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGCATTTGGTTGGGTAGTAGGTAGTCTAATTGGGTTAGGATAGATA  650

seq1  AGAATCTGCCCGGATATTAGAGTACACACTCTAATAGCTTGTTAATAAAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAATCTGCCCGGATATTAGAGTACACACTCTAATAGCTTGTTAATAAAA  700

seq1  ATGCCAGGTCTCTGTATCTTTACGGCTCGAGTGGGTATAGAAACACTCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCCAGGTCTCTGTATCTTTACGGCTCGAGTGGGTATAGAAACACTCTG  750

seq1  CAGTTATTTGGGAGCAAAAAGGGACATAGAACGCCCCCTCCCCCAAGATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTATTTGGGAGCAAAAAGGGACATAGAACGCCCCCTCCCCCAAGATT  800

seq1  ACTATTACAGGGGCTGAATCTGTGCATTGACCTGGGACTAGGCTTGGGGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTATTACAGGGGCTGAATCTGTGCATTGACCTGGGACTAGGCTTGGGGA  850

seq1  CTGGTAGAACCAGGACCAAGGAGGGCTACGTGCCTGATAAGGAGTCAGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAGAACCAGGACCAAGGAGGGCTACGTGCCTGATAAGGAGTCAGCC  900

seq1  AGCCGTAGCCTGGCGTCAGGGCAGGCAGACCAGGACATGTTGGAGCCCTG  950
      ||||||||||| |||||| |||||||||||||||||||||||||| ||||
seq2  AGCCGTAGCCT-GCGTCA-GGCAGGCAGACCAGGACATGTTGGAG-CCTG  947

seq1  CCAGGAAGAGAAGGCCTGGGCATGGAAGAAAATGTTCCCCGCGTGTTTCA  1000
      |||||||||||||  || ||||| |||||||||  | |||||||| ||||
seq2  CCAGGAAGAGAAG--CT-GGCAT-GAAGAAAATTGTTCCCGCGTG-TTCA  992

seq1  TCCTATGGAATGCGGCCTTTTGATTTTATAGAGGGTTTATTTATACAGCA  1050
      ||||||||||||| |||||||||||||||||||||||   ||| ||||||
seq2  TCCTATGGAATGC-GCCTTTTGATTTTATAGAGGGTT--ATTAAACAGCA  1039

seq1  TTGAGACTAAGGGTGATTTTCC  1072
      ||||||||||||  ||||||||
seq2  TTGAGACTAAGGTGGATTTTCC  1061