BAC Information

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BAC

Clone NameB6Ng01-326F01
Chromosome2 (Build37)
Map Location 55,168,778 - 55,309,972
singlet/doubletdoublet
Overlap geneKcnj3
Upstream geneLOC100041792, LOC100042878, Galnt13, LOC666936
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-326F01.bB6Ng01-326F01.g
ACCGA114153GA114154
length1,196845
definitionB6Ng01-326F01.b B6Ng01-326F01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(55,308,773 - 55,309,972)(55,168,778 - 55,169,622)
sequence
gaattcaatctttgggattcacatggaaaaagaagagaacagactcctga
aagttgtattcttatcaatatatgtgcaaatgttacacacacacacacac
acacacacacaaacacacacaaaagtagtgactgatgttttagaatgtaa
aagtatattgtagctgggtattaattgaataaatatttttaccaaaagta
ccgttagaaagcctagagatgtagcataaaaccaaatactactggtctaa
aataataaaagcaacaatagaataacttctaatgatattctgctacatgc
cttgttcagccatcatcagaaaatcttcctcctgcagtagatgaggtata
gagacattatgcagagaaagaatacctctgaatacacagctctaagtgaa
atgactacatgaaatccttcctctcagagcccatggaaccccattgaaga
gaagacgaaagtaccaagggaaatagagagaggatggagggcagccagaa
gaagaagaccctctaaacagctgagcaaagctcaaataaactcacaaaaa
ctgaatcagcaagcacagggcctacatgggtctgcaccaggtcctcagtt
tatagactatagcttctgtttagtgcttttatgggactccttaatgtgta
aacaagcaggtctctgattcttgggctttctcttggggttcttttatttt
tctattttcttctcttgcccaactctgatatgatggcttttgtagtatct
tatttcattttcacatgttctgctgttatctcttcaaagcctgttctttt
ctaatgagagacagaaagggaatggatacagatgacaaattcaatgagga
gaaactggcaggtgtagagggagggaaaactgtaatcagataatattgta
taaaaaaaatctgtgttcatagagtaggaaaaatttacctttttcgatgc
aatttcttgatgctatatttaacaataactatgttatccaggaggatttt
tactccttttcccttatggtagccttagacaaaactagaagaagcagtac
aaacaactaagaatccccaactgcctccccagaaatctttccctcacccc
aatctttacatgatggaatggaaattatgattcttgcaaactaagttggt
tcccatgatgattgaagaagtgtcctaggaatgaatgatttactga

gaattcttttccttggacattctttggaaatcccttttcatgtctctctt
ttccttttctgcagtgaacagaaaactatatatataaaaaaaaactttta
tttttctagcttggttataaaaaaagaagcttttctaaacctaatgtgtt
aactaaatgtggcagttggagttgataattataaggtgacagcaccagag
gttgggattctcaaattctttttatcatatagtggaattttcaaggtttt
atgtcgtgagctgtaattatagctcttggaaactttattatttaaccttg
gaaaatacattgcttttatttgctaataaatgactgactttgtggctcta
aggttgatttcattcttctgtttgaacatattttatttctcaactccagt
aggaagctgaaaactggacagcattcctcctcgtggtgagatggcaggat
taccttttgttcacatggagacattttagcagtgaaaaagaaatgtgtaa
tccacatcctaaaaccacaagtttatgtttatgtttattattattattat
tattattattattattatttcaagttatttctttgctgtttatgtaaata
tagaaaagttagtccttgaattccattaactgcaatctttattgttgtgg
cttggtttaatgcttgtattatgtttttgggtcccccaaagtgcatgaga
atttgcacgggtccctttccccagttggttttgattggtaattaagttgc
cagtcgttaatgactgagcagagagactgaggcaaactttagggtttccc
agcaagggatctggggaggaggaaggagatatctgctcatgccct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_55308773_55309972
seq2: B6Ng01-326F01.b_48_1243 (reverse)

seq1  TCAGTAAAACATCCTATCCTAGGACAACTTTCATCAAATCATCATGTGAC  50
      |||||||| ||| |  ||||||||||   ||| || |||||||||| || 
seq2  TCAGTAAATCATTCATTCCTAGGACA--CTTCTTC-AATCATCATGGGAA  47

seq1  ACAACTTAGTTTCCAAGAAAATCATAAATTCCAATTCATCATGTAAAAGA  100
       ||||||||||| ||||  |||||||| ||||| | |||||||| |||||
seq2  CCAACTTAGTTTGCAAG--AATCATAATTTCCATTCCATCATGT-AAAGA  94

seq1  TTGGGGTGAGGG-AAGATTTCTGGGGAGGCAGTTGGGGAT--CTAGTTGT  147
      |||||||||||| |||||||||||||||||||||||||||   |||||||
seq2  TTGGGGTGAGGGAAAGATTTCTGGGGAGGCAGTTGGGGATTCTTAGTTGT  144

seq1  TTGTACTGC-TCTTCTAGTTTTGTCTAAGGCTACCAT-AGGGAAAAGGAG  195
      ||||||||| ||||||||||||||||||||||||||| ||||||||||||
seq2  TTGTACTGCTTCTTCTAGTTTTGTCTAAGGCTACCATAAGGGAAAAGGAG  194

seq1  TAAAAATCCCTCCTGGATAACATAGGTAATTGTTAAATATAAGCATCAAG  245
      ||||||| |||||||||||||||| || |||||||||||| |||||||||
seq2  TAAAAAT-CCTCCTGGATAACATA-GTTATTGTTAAATAT-AGCATCAAG  241

seq1  AAATTGCATCGAAAAAGGT-AATTTTTCCTACTCTATGAAACACAGATTT  294
      ||||||||||||||||||| |||||||||||||||||| |||||||||||
seq2  AAATTGCATCGAAAAAGGTAAATTTTTCCTACTCTATG-AACACAGATTT  290

seq1  TTTTTATACAATATTATCTGATTACAGTTTTCCCTCCCTCTACACCTGCC  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTATACAATATTATCTGATTACAGTTTTCCCTCCCTCTACACCTGCC  340

seq1  AGTTTCTCCTCATTGAATTTGTCATCTGTATCCATTCCCTTTCTGTCTCT  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTCTCCTCATTGAATTTGTCATCTGTATCCATTCCCTTTCTGTCTCT  390

seq1  CATTAGAAAAGAACAGGCTTTGAAGAGATAACAGCAGAACATGTGAAAAT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTAGAAAAGAACAGGCTTTGAAGAGATAACAGCAGAACATGTGAAAAT  440

seq1  GAAATAAGATACTACAAAAGCCATCATATCAGAGTTGGGCAAGAGAAGAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAATAAGATACTACAAAAGCCATCATATCAGAGTTGGGCAAGAGAAGAA  490

seq1  AATAGAAAAATAAAAGAACCCCAAGAGAAAGCCCAAGAATCAGAGACCTG  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGAAAAATAAAAGAACCCCAAGAGAAAGCCCAAGAATCAGAGACCTG  540

seq1  CTTGTTTACACATTAAGGAGTCCCATAAAAGCACTAAACAGAAGCTATAG  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGTTTACACATTAAGGAGTCCCATAAAAGCACTAAACAGAAGCTATAG  590

seq1  TCTATAAACTGAGGACCTGGTGCAGACCCATGTAGGCCCTGTGCTTGCTG  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATAAACTGAGGACCTGGTGCAGACCCATGTAGGCCCTGTGCTTGCTG  640

seq1  ATTCAGTTTTTGTGAGTTTATTTGAGCTTTGCTCAGCTGTTTAGAGGGTC  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCAGTTTTTGTGAGTTTATTTGAGCTTTGCTCAGCTGTTTAGAGGGTC  690

seq1  TTCTTCTTCTGGCTGCCCTCCATCCTCTCTCTATTTCCCTTGGTACTTTC  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTTCTTCTGGCTGCCCTCCATCCTCTCTCTATTTCCCTTGGTACTTTC  740

seq1  GTCTTCTCTTCAATGGGGTTCCATGGGCTCTGAGAGGAAGGATTTCATGT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCTTCTCTTCAATGGGGTTCCATGGGCTCTGAGAGGAAGGATTTCATGT  790

seq1  AGTCATTTCACTTAGAGCTGTGTATTCAGAGGTATTCTTTCTCTGCATAA  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCATTTCACTTAGAGCTGTGTATTCAGAGGTATTCTTTCTCTGCATAA  840

seq1  TGTCTCTATACCTCATCTACTGCAGGAGGAAGATTTTCTGATGATGGCTG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTATACCTCATCTACTGCAGGAGGAAGATTTTCTGATGATGGCTG  890

seq1  AACAAGGCATGTAGCAGAATATCATTAGAAGTTATTCTATTGTTGCTTTT  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACAAGGCATGTAGCAGAATATCATTAGAAGTTATTCTATTGTTGCTTTT  940

seq1  ATTATTTTAGACCAGTAGTATTTGGTTTTATGCTACATCTCTAGGCTTTC  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTATTTTAGACCAGTAGTATTTGGTTTTATGCTACATCTCTAGGCTTTC  990

seq1  TAACGGTACTTTTGGTAAAAATATTTATTCAATTAATACCCAGCTACAAT  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACGGTACTTTTGGTAAAAATATTTATTCAATTAATACCCAGCTACAAT  1040

seq1  ATACTTTTACATTCTAAAACATCAGTCACTACTTTTGTGTGTGTTTGTGT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTTTTACATTCTAAAACATCAGTCACTACTTTTGTGTGTGTTTGTGT  1090

seq1  GTGTGTGTGTGTGTGTGTGTGTAACATTTGCACATATATTGATAAGAATA  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTGTGTGTGTGTGTGTGTGTAACATTTGCACATATATTGATAAGAATA  1140

seq1  CAACTTTCAGGAGTCTGTTCTCTTCTTTTTCCATGTGAATCCCAAAGATT  1194
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTTCAGGAGTCTGTTCTCTTCTTTTTCCATGTGAATCCCAAAGATT  1190

seq1  GAATTC  1200
      ||||||
seq2  GAATTC  1196


seq1: chr2_55168778_55169622
seq2: B6Ng01-326F01.g_64_908

seq1  GAATTCTTTTCCTTGGACATTCTTTGGAAATCCCTTTTCATGTCTCTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTTCCTTGGACATTCTTTGGAAATCCCTTTTCATGTCTCTCTT  50

seq1  TTCCTTTTCTGCAGTGAACAGAAAACTATATATATAAAAAAAAACTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTCTGCAGTGAACAGAAAACTATATATATAAAAAAAAACTTTTA  100

seq1  TTTTTCTAGCTTGGTTATAAAAAAAGAAGCTTTTCTAAACCTAATGTGTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCTAGCTTGGTTATAAAAAAAGAAGCTTTTCTAAACCTAATGTGTT  150

seq1  AACTAAATGTGGCAGTTGGAGTTGATAATTATAAGGTGACAGCACCAGAG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTAAATGTGGCAGTTGGAGTTGATAATTATAAGGTGACAGCACCAGAG  200

seq1  GTTGGGATTCTCAAATTCTTTTTATCATATAGTGGAATTTTCAAGGTTTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGATTCTCAAATTCTTTTTATCATATAGTGGAATTTTCAAGGTTTT  250

seq1  ATGTCGTGAGCTGTAATTATAGCTCTTGGAAACTTTATTATTTAACCTTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTCGTGAGCTGTAATTATAGCTCTTGGAAACTTTATTATTTAACCTTG  300

seq1  GAAAATACATTGCTTTTATTTGCTAATAAATGACTGACTTTGTGGCTCTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAAATACATTGCTTTTATTTGCTAATAAATGACTGACTTTGTGGCTCTA  350

seq1  AGGTTGATTTCATTCTTCTGTTTGAACATATTTTATTTCTCAACTCCAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTGATTTCATTCTTCTGTTTGAACATATTTTATTTCTCAACTCCAGT  400

seq1  AGGAAGCTGAAAACTGGACAGCATTCCTCCTCGTGGTGAGATGGCAGGAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAGCTGAAAACTGGACAGCATTCCTCCTCGTGGTGAGATGGCAGGAT  450

seq1  TACCTTTTGTTCACATGGAGACATTTTAGCAGTGAAAAAGAAATGTGTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTTTTGTTCACATGGAGACATTTTAGCAGTGAAAAAGAAATGTGTAA  500

seq1  TCCACATCCTAAAACCACAAGTTTATGTTTATGTTTATTATTATTATTAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACATCCTAAAACCACAAGTTTATGTTTATGTTTATTATTATTATTAT  550

seq1  TATTATTATTATTATTATTTCAAGTTATTTCTTTGCTGTTTATGTAAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTATTATTATTATTATTTCAAGTTATTTCTTTGCTGTTTATGTAAATA  600

seq1  TAGAAAAGTTAGTCCTTGAATTCCATTAACTGCAATCTTTATTGTTGTGG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAGTTAGTCCTTGAATTCCATTAACTGCAATCTTTATTGTTGTGG  650

seq1  CTTGGTTTAATGCTTGTATTATGTTTTTGGGTCCCCCAAAGTGCATGAGA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGTTTAATGCTTGTATTATGTTTTTGGGTCCCCCAAAGTGCATGAGA  700

seq1  ATTTGCAC-GGTCCCTTTCCCCAGTTGGTTTTGATTGGTAAATTAAGTTG  749
      |||||||| |||||||||||||||||||||||||||||| ||||||||||
seq2  ATTTGCACGGGTCCCTTTCCCCAGTTGGTTTTGATTGGT-AATTAAGTTG  749

seq1  CCAGTCGTTAATGACTGAGCAGAGAGACTGAGGCAAAACTTTAGGGTTCC  799
      |||||||||||||||||||||||||||||||||| ||||||||||||| |
seq2  CCAGTCGTTAATGACTGAGCAGAGAGACTGAGGC-AAACTTTAGGGTTTC  798

seq1  CCAGCAAGGGATCTAGGGAGGAGGAAGGAGATAGCTGC-CATGCCCT  845
      |||||||||||||| |||||||||||||||||| |||| ||||||||
seq2  CCAGCAAGGGATCTGGGGAGGAGGAAGGAGATATCTGCTCATGCCCT  845


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