BAC Information

Click to search

BAC

Clone NameB6Ng01-326J09
Chromosome2 (Build37)
Map Location 89,771,796 - 89,909,839
singlet/doubletdoublet
Overlap geneOlfr1259, Olfr1260, Olfr1261, Olfr1262, Olfr1263, Olfr1264, Olfr1265, Olfr140, Olfr1266-ps1
Upstream geneOlfr1212, Olfr1213, Olfr1214, Olfr1215, Olfr1216, Olfr1217, Olfr1218, Olfr1219, Olfr1220, Olfr1221, Olfr1222, Olfr1223, Olfr1224-ps1, Olfr1225, LOC435676, Olfr1226, LOC100042983, GA_x5J8B7TTH1T-1160-261, Olfr1227-ps1, Olfr1228, Olfr1229, Olfr1230, Olfr1231, Olfr1232, Olfr1233, Olfr1234, Olfr1235-ps1, GA_x5J8B7W62NC-668773-668438, Olfr1237-ps1, Olfr1238, Olfr1239, Olfr1240, Olfr1241, Olfr1242, Olfr1243, Olfr1244-ps1, Olfr1245, Olfr1246, Olfr1247, Olfr1248, Olfr1249, Olfr1541-ps1, Olfr1250, Olfr1251, GA_x5J8B7TT7VM-20-924, Olfr1252, GA_x5J8B7W62NC-992588-991951, Olfr1253-ps1, Olfr1254, Olfr1255, Olfr1256, Olfr48, Olfr1257, Olfr1258
Downstream geneOlfr1267-ps1, Olfr1268-ps1, Olfr1269, Olfr32, LOC100043090, Olfr1270, LOC627525, LOC100043096, Olfr1506, Olfr142, Olfr1271, Olfr1272, Olfr1273, LOC100042690, LOC100043113, LOC668629, GA_x5J8B7W2BV0-3116-4045, Ptprj, 4933423P22Rik, Nup160, Fnbp4, Rpl30-ps3, Agbl2, Mtch2, C1qtnf4, Ndufs3, Kbtbd4, Ptpmt1, Cugbp1, LOC279067, Rapsn, Psmc3, Slc39a13
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-326J09.bB6Ng01-326J09.g
ACCGA114359GA114360
length1,1671,082
definitionB6Ng01-326J09.b B6Ng01-326J09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,908,665 - 89,909,839)(89,771,796 - 89,772,889)
sequence
gaattctctcaaacattttttcattcctacttagaagatattggctcctt
tattgttgttttacctgcaaatccatttagcttttagctttcaaagatga
ttcttttgtaaatatatcttacatattaataattgtaaactaaagacaag
ctattctaactcaacctaacccaaacaaaaccagggctgggaagatgggt
tacttggttaaaaggttgtcatgcaagattgaggacccaaacttaatcca
cagcaaccatgtgatgagaaggtgtttaattttaagcctagtcctgagga
ggcagagacagttggttatatcagatttgctgtccagtcagcctaggaaa
atttacaagccccatgacccattaagagacactgtctcaaaaaaaatatg
gatggcacctctgagtaatttcacatggaaattccttcttgcctccacat
atgccacatgttcccaacatttctatgaatgggttggtagtggattcttg
taccagaatcttaggatattagattcctaaaggtggtgctaactaaactc
ctaaaggtggtctacctgcatccactgcaagagtactttagggaacccac
ttccatagatgtcatgaactgtgtgataaggtaaataaaagtatactcaa
ctatgctctaatactttatactttgcttttatcatatacaagctccggag
cctggtaatttttaccatttgtagaataattagagttgaggaattctatc
actaattggacagcattgacctcctcccagtatagatggggctatatcat
cagttaagtcattatgagtaggagatttggagcagacatttaaaagaatg
caaacaacagtttcttatctccaaatacaaacaaaatacaaacaaagttt
cttatctccaaataatctttaaattcctctgcattgtatcatgtatagct
tccttccatttgctagaatagagtccagttgtttccctaatttctttctt
ctgcttgtttatcatttgtataaaagaggcactgatttatttgagttatt
tgttagcagccacttgccgagttagacagttgtagagttctctggaagga
ttctgggagttgctcatattacatattatattcagcacaatacgaatatc
ttgacttctttccttta
gaattctttcttaccttttatgattaaagcatagggagaatcctagttag
actacttgggaaatgacagctttgttagagtgaaaactaagaaagaaact
aaaatagattcttggcaaatggggaaattattcaccttgaaattctcttg
gttgtcaataaaatatcatgaaactataattgtgagatatttgggttata
attttctacttatcaatctgatttttggcaaagtctatcatgaaaaattg
ttttaaatagtgtttcttctatataaaaatctatatcagaataaaaaatt
cttcattatctttgtccctcattcatttagcaacaatttttgagcataag
gaatgtatcaagcacagagacatttgcaaagtgtatgtttcaacactagt
aatagcctaataatgaatttcttgtatgtagcaagttggagttgtttgct
tgtttttgttgtagtttgttttggggtttgctttttgttttttgttcttg
ttttcactccttctttatttagcttttgaccacttggctatggtatgtct
tgatataattgtttgaagtaatgctattaagtgcccacttgagcttcctg
gatcttgatttctatctttttttaaggtttcctgaaagaaagaagaaaaa
aaaaaaaaaaagctatacagggaatggaccatacaggctatgcatgacaa
tctaaaaactagcatcatattcaagagtaaaatgtttttcctttaagtca
ggagcaaagtgaggatactcactttctgcatttctcttcaacattaagaa
agaaaccaatctggcaaaaaaaggaaataaaataatctaaattagaatga
gagaaattaagttgcctgttgttgatgatcctgcaaattgaaatccctaa
agatcccataaacaaacaaaatatttataactaataattgaattatgatt
tcagtgacaaaatcatcagatcagaattctacactaaatataatattaaa
aaactaaaattaacttcattaataacattagaatttaatatttaggagta
aattccaatgcaaaataagagctgcatatgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_89908665_89909839
seq2: B6Ng01-326J09.b_48_1214 (reverse)

seq1  TAAAGG-AAGAAGTCAAGATATCACTATTTGTGGCTG-ATATAATAGTTT  48
      |||||| |||||||||||||||   || |||| |||| ||||||||  | 
seq2  TAAAGGAAAGAAGTCAAGATATTCGTA-TTGT-GCTGAATATAATATGTA  48

seq1  ATATGAGCAACTCCCAGAATTCTTCCAGAGAACTCTTACAACTGTCTAAC  98
      |||||||||||||||||||| |||||||||||||| ||||||||||||||
seq2  ATATGAGCAACTCCCAGAATCCTTCCAGAGAACTC-TACAACTGTCTAAC  97

seq1  TTCGGCAAGTGGCTGGCTACAAAATTAACTCAAATAAATCAGTTGCCTTC  148
       ||||||||||||||   |||||  ||||||||||||||||| |||| ||
seq2  -TCGGCAAGTGGCTGCTAACAAA--TAACTCAAATAAATCAG-TGCC-TC  142

seq1  TTTTATACAAATGATAAACAAGCAG-AGAAAGAAATTAGGGAAACAACTG  197
      ||||||||||||||||||||||||| ||||||||||||||||||||||||
seq2  TTTTATACAAATGATAAACAAGCAGAAGAAAGAAATTAGGGAAACAACTG  192

seq1  GACTCTATTCTAGCAAATGGAAGGAAGCTATACATGATACAATGCAGAGG  247
      |||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  GACTCTATTCTAGCAAATGGAAGGAAGCTATACATGATACAATGCAGA-G  241

seq1  GAATTTAAAGATTATTTTGGAGATAAGAAACTTTGTTTGTATTTTGTTTG  297
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  GAATTTAAAGATTA-TTTGGAGATAAGAAACTTTGTTTGTATTTTGTTTG  290

seq1  TATTTTGGAGATAAGAAACTGTTGTTTGCATTCTTTTAAATGTCTGCTCC  347
      || |||||||||||||||||||||||||||||||||||||||||||||||
seq2  TA-TTTGGAGATAAGAAACTGTTGTTTGCATTCTTTTAAATGTCTGCTCC  339

seq1  AAATCTCCTACTCATAATGACTTAACTGATGATATAGCCCCATCTATACT  397
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTCCTACTCATAATGACTTAACTGATGATATAGCCCCATCTATACT  389

seq1  GGGAGGAGGTCAATGCTGTCCAATTAGTGATAGAATTCCTCAACTCTAAT  447
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGAGGAGGTCAATGCTGTCCAATTAGTGATAGAATTCCTCAACTCTAAT  439

seq1  TATTCTACAAATGGTAAAAATTACCAGGCTCCGGAGCTTGTATATGATAA  497
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTACAAATGGTAAAAATTACCAGGCTCCGGAGCTTGTATATGATAA  489

seq1  AAGCAAAGTATAAAGTATTAGAGCATAGTTGAGTATACTTTTATTTACCT  547
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCAAAGTATAAAGTATTAGAGCATAGTTGAGTATACTTTTATTTACCT  539

seq1  TATCACACAGTTCATGACATCTATGGAAGTGGGTTCCCTAAAGTACTCTT  597
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCACACAGTTCATGACATCTATGGAAGTGGGTTCCCTAAAGTACTCTT  589

seq1  GCAGTGGATGCAGGTAGACCACCTTTAGGAGTTTAGTTAGCACCACCTTT  647
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGGATGCAGGTAGACCACCTTTAGGAGTTTAGTTAGCACCACCTTT  639

seq1  AGGAATCTAATATCCTAAGATTCTGGTACAAGAATCCACTACCAACCCAT  697
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATCTAATATCCTAAGATTCTGGTACAAGAATCCACTACCAACCCAT  689

seq1  TCATAGAAATGTTGGGAACATGTGGCATATGTGGAGGCAAGAAGGAATTT  747
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATAGAAATGTTGGGAACATGTGGCATATGTGGAGGCAAGAAGGAATTT  739

seq1  CCATGTGAAATTACTCAGAGGTGCCATCCATATTTTTTTTGAGACAGTGT  797
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATGTGAAATTACTCAGAGGTGCCATCCATATTTTTTTTGAGACAGTGT  789

seq1  CTCTTAATGGGTCATGGGGCTTGTAAATTTTCCTAGGCTGACTGGACAGC  847
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTAATGGGTCATGGGGCTTGTAAATTTTCCTAGGCTGACTGGACAGC  839

seq1  AAATCTGATATAACCAACTGTCTCTGCCTCCTCAGGACTAGGCTTAAAAT  897
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATCTGATATAACCAACTGTCTCTGCCTCCTCAGGACTAGGCTTAAAAT  889

seq1  TAAACACCTTCTCATCACATGGTTGCTGTGGATTAAGTTTGGGTCCTCAA  947
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAACACCTTCTCATCACATGGTTGCTGTGGATTAAGTTTGGGTCCTCAA  939

seq1  TCTTGCATGACAACCTTTTAACCAAGTAACCCATCTTCCCAGCCCTGGTT  997
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCATGACAACCTTTTAACCAAGTAACCCATCTTCCCAGCCCTGGTT  989

seq1  TTGTTTGGGTTAGGTTGAGTTAGAATAGCTTGTCTTTAGTTTACAATTAT  1047
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTTGGGTTAGGTTGAGTTAGAATAGCTTGTCTTTAGTTTACAATTAT  1039

seq1  TAATATGTAAGATATATTTACAAAAGAATCATCTTTGAAAGCTAAAAGCT  1097
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATGTAAGATATATTTACAAAAGAATCATCTTTGAAAGCTAAAAGCT  1089

seq1  AAATGGATTTGCAGGTAAAACAACAATAAAGGAGCCAATATCTTCTAAGT  1147
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGGATTTGCAGGTAAAACAACAATAAAGGAGCCAATATCTTCTAAGT  1139

seq1  AGGAATGAAAAAATGTTTGAGAGAATTC  1175
      ||||||||||||||||||||||||||||
seq2  AGGAATGAAAAAATGTTTGAGAGAATTC  1167

seq1: chr2_89771796_89772889
seq2: B6Ng01-326J09.g_63_1144

seq1  GAATTCTTTCTTACCTTTTATGATTAAAGCATAGGGAGAATCCTAGTTAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTTCTTACCTTTTATGATTAAAGCATAGGGAGAATCCTAGTTAG  50

seq1  ACTACTTGGGAAATGACAGCTTTGTTAGAGTGAAAACTAAGAAAGAAACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTACTTGGGAAATGACAGCTTTGTTAGAGTGAAAACTAAGAAAGAAACT  100

seq1  AAAATAGATTCTTGGCAAATGGGGAAATTATTCACCTTGAAATTCTCTTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGATTCTTGGCAAATGGGGAAATTATTCACCTTGAAATTCTCTTG  150

seq1  GTTGTCAATAAAATATCATGAAACTATAATTGTGAGATATTTGGGTTATA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGTCAATAAAATATCATGAAACTATAATTGTGAGATATTTGGGTTATA  200

seq1  ATTTTCTACTTATCAATCTGATTTTTGGCAAAGTCTATCATGAAAAATTG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTCTACTTATCAATCTGATTTTTGGCAAAGTCTATCATGAAAAATTG  250

seq1  TTTTAAATAGTGTTTCTTCTATATAAAAATCTATATCAGAATAAAAAATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAATAGTGTTTCTTCTATATAAAAATCTATATCAGAATAAAAAATT  300

seq1  CTTCATTATCTTTGTCCCTCATTCATTTAGCAACAATTTTTGAGCATAAG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCATTATCTTTGTCCCTCATTCATTTAGCAACAATTTTTGAGCATAAG  350

seq1  GAATGTATCAAGCACAGAGACATTTGCAAAGTGTATGTTTCAACACTAGT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGTATCAAGCACAGAGACATTTGCAAAGTGTATGTTTCAACACTAGT  400

seq1  AATAGCCTAATAATGAATTTCTTGTATGTAGCAAGTTGGAGTTGTTTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAGCCTAATAATGAATTTCTTGTATGTAGCAAGTTGGAGTTGTTTGCT  450

seq1  TGTTTTTGTTGTAGTTTGTTTTGGGGTTTGCTTTTTGTTTTTTGTTCTTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTTTGTTGTAGTTTGTTTTGGGGTTTGCTTTTTGTTTTTTGTTCTTG  500

seq1  TTTTCACTCCTTCTTTATTTAGCTTTTGACCACTTGGCTATGGTATGTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACTCCTTCTTTATTTAGCTTTTGACCACTTGGCTATGGTATGTCT  550

seq1  TGATATAATTGTTTGAAGTAATGCTATTAAGTGCCCACTTGAGCTTCCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATATAATTGTTTGAAGTAATGCTATTAAGTGCCCACTTGAGCTTCCTG  600

seq1  GATCTTGATTTCTATCTTTTTTTAAGGTTTCCTGAAAGAAAGAAGAAAAA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCTTGATTTCTATCTTTTTTTAAGGTTTCCTGAAAGAAAGAAGAAAAA  650

seq1  AAAAAAAAAAAGCTATACAGGGAATGGACCATACAGGCTATGCATGACAA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAAAAAGCTATACAGGGAATGGACCATACAGGCTATGCATGACAA  700

seq1  TCTAAAAACTAGCATCATATTCAAGAGTAAAATGTTTTTCCTTTAAGTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAAAACTAGCATCATATTCAAGAGTAAAATGTTTTTCCTTTAAGTCA  750

seq1  GGAGCAAAGTGAGGATACTCACTTTCTTCATTTCTCTTCAACATTAAGAA  800
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  GGAGCAAAGTGAGGATACTCACTTTCTGCATTTCTCTTCAACATTAAGAA  800

seq1  AGAAACCAATCTGGC-AAAAAAGGAAATAAAATAATCTAAATTAGAATGA  849
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  AGAAACCAATCTGGCAAAAAAAGGAAATAAAATAATCTAAATTAGAATGA  850

seq1  GAGAAATTAAGTTGCCTGTTGTTGATGATCCTGCAAATTGAAATCCCTAA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAATTAAGTTGCCTGTTGTTGATGATCCTGCAAATTGAAATCCCTAA  900

seq1  AGATCCCATAAAAAAAAAACAAAAATATTTATAACTAATAAATTGAA-TA  948
      |||||||||||| |||     |||||||||||||||||| ||||||| ||
seq2  AGATCCCATAAACAAA----CAAAATATTTATAACTAAT-AATTGAATTA  945

seq1  TGATTTCAGGTTACAAAATCATCAGATCAAGAATTTCTACACTAAATATA  998
      |||||||| || |||||||||||||||| |||| ||||||||||||||| 
seq2  TGATTTCA-GTGACAAAATCATCAGATC-AGAA-TTCTACACTAAATAT-  991

seq1  AATATTAAAAAATAAAAATTTAACTTCATTTATAACATAAGAAATTAAAT  1048
      ||||||||||||  |||| ||||||||||| ||||||| || |||| |||
seq2  AATATTAAAAAACTAAAA-TTAACTTCATTAATAACATTAG-AATTTAAT  1039

seq1  ATTTAGGAGTAAATTCAATTGGAAAAATAAAAGCTGGCAATATGTG  1094
      |||||||||||||||| | | | ||||||| |||||   |||||||
seq2  ATTTAGGAGTAAATTCCAAT-GCAAAATAAGAGCTG--CATATGTG  1082