BAC Information

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BAC

Clone NameB6Ng01-326O01
Chromosome2 (Build37)
Map Location 113,166,932 - 113,319,006
singlet/doubletdoublet
Overlap geneFmn1
Upstream geneSlc12a6, Tmem85, EG668839, 2410042D21Rik, 2900064A13Rik, Chrm5, Aven, Ryr3, 4930563P21Rik
Downstream geneGrem1, LOC100043520, Scg5, Arhgap11a, LOC100043526, Gja9, A530058N18Rik, Actc1, Aqr, Zfp770
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-326O01.bB6Ng01-326O01.g
ACCGA114573GA114574
length1,163985
definitionB6Ng01-326O01.b B6Ng01-326O01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,166,932 - 113,168,096)(113,318,035 - 113,319,006)
sequence
gaattctgattttaagtaccagatggtggattttgtatttatgtgggagt
ggattaaaggcaatgccctttcctgcctacctgcttggaaaagatcccca
aatcacataccacatctcaatgtcatttagacctctaatcctcttatgaa
agctttcctggtttgagctgtaatcatcagtagttagacctttatttgga
acaaaacagtgtgtctgggtttgaaggtctgtactgagttagcaacactc
taacagtgattgcaaagagccttgcctatgcaagggtcacacaagcaggc
tctctgacttgcaagacctgggccccttccctgcatcgccgaggtccaaa
catttttctacttaaaccgatttagctgttgagtcttttaggagaagatc
agtttggaggcagctgggaggttgggcaaagaccaggctagaggactaac
ataaacataaagatttggctttcatcaagtgtttcaattttagaccatgg
tatagtaccaggaaccaaagggcctggccaggtctctaaagctagcgaat
cttgggaaagctgaagccagcagcttccctcccccatcacttccagccag
tccgagcgtgcgccctgggacatagcccgcaccggcaagcaaggagggct
tgcctccgaggacaagatgtcgccttcgccgttcacttagacttagctca
aagactaccatatttgacccagcggtcaggtcccaggccacgcagtgaca
gttcagcaatccagcgaggaatcgcactcggtcagttattttggcgctga
ggttttctgcccgccttcctatcccctggctcggcagccgctgcacattc
ccattggtcgagatgactgtctatcagtccattgcacacctcccccaaac
agcctgtcaagcagcgcgtgttaggaggcggagcctgtggctaggggcgg
gcctcggcggtggaaggcacagcgaccgcttcaccgctctggctccgtac
tggagcgcggaggcattcctcgcagcagctgctccgctgctgcacctgtc
aggtaaaagaatctttctttctcggacctcttgcccactcttcttcccag
caaggcttgtctgccttggtcctctcccggccttggaggttctggtcgaa
ctggtaagcctcc
gaattcaagagtgcatcaactgaatccctgttgggagccaccctccaaac
aaccaaaggtgtggacgaggcttggacaggaaagagagcagttagatacg
gccaggactggggcaaaggggaactcattcccttcgacacagcctggacg
accaaaagtgccaagttcagcagtgagggcagggttaaaaagagaagagg
cgcatgagtgagtgccagataaagaataggtcaggcgtttgtcctcaagg
agctgaaagttcatgccccccagagaacaaacacagatgtgttaagagag
gttataaaagaaactttctatctgagagcacagggctctattttttactc
tgtttaaaaaagaaaacacacagagagacagactctaatgctgggccctt
tctaggctcttgatcaacagagaaagcaaagattatttgtcatttgaagg
agagattcctgagagaactgagggtgaaagcaagacaaaaataaatttct
agtccacttttcatctggatataatgaaattcatcccaaaaatatgaccc
ctatgtacacaggagctgcagccagctactaaaactaccaccccactggc
tgtgtataggaaacaactccattttcagcagaatagctaatgtgcataga
accacacagacatccacactgcagaggactataaagcaagatgctgtgac
cactgacttttgtgggacaaatcagttttttacaagtgtgtcccacagat
tttgtgggacaaatctgttttttacaagtgtgatcagtttcacaagtctg
tattgcaacaaacagagcatccctcttaatttcagtatgctaagttaagg
cagacatactgggggttccagttcaaagaggaagaccatagggttaagtc
ccaccaggagaggagctggggttgtttgagggcttatgcctagccacact
gcagccctttcagtgaacgtgtgctccaggtgatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_113166932_113168096
seq2: B6Ng01-326O01.b_50_1212

seq1  GAATTCTGATTTTAAGTACCAGATGGTGGATTTTGTATTTATGTGGGAGT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGATTTTAAGTACCAGATGGTGGATTTTGTATTTATGTGGGAGT  50

seq1  GGATTAAAGGCAATGCCCTTTCCTGCCTACCTGCTTGGAAAAGATCCCCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGATTAAAGGCAATGCCCTTTCCTGCCTACCTGCTTGGAAAAGATCCCCA  100

seq1  AATCACATACCACATCTCAATGTCATTTAGACCTCTAATCCTCTTATGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCACATACCACATCTCAATGTCATTTAGACCTCTAATCCTCTTATGAA  150

seq1  AGCTTTCCTGGTTTGAGCTGTAATCATCAGTAGTTAGACCTTTATTTGGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTTCCTGGTTTGAGCTGTAATCATCAGTAGTTAGACCTTTATTTGGA  200

seq1  ACAAAACAGTGTGTCTGGGTTTGAAGGTCTGTACTGAGTTAGCAACACTC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAAACAGTGTGTCTGGGTTTGAAGGTCTGTACTGAGTTAGCAACACTC  250

seq1  TAACAGTGATTGCAAAGAGCCTTGCCTATGCAAGGGTCACACAAGCAGGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGTGATTGCAAAGAGCCTTGCCTATGCAAGGGTCACACAAGCAGGC  300

seq1  TCTCTGACTTGCAAGACCTGGGCCCCTTCCCTGCATCGCCGAGGTCCAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCTGACTTGCAAGACCTGGGCCCCTTCCCTGCATCGCCGAGGTCCAAA  350

seq1  CATTTTTCTACTTAAACCGATTTAGCTGTTGAGTCTTTTAGGAGAAGATC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTTTTCTACTTAAACCGATTTAGCTGTTGAGTCTTTTAGGAGAAGATC  400

seq1  AGTTTGGAGGCAGCTGGGAGGTTGGGCAAAGACCAGGCTAGAGGACTAAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTTGGAGGCAGCTGGGAGGTTGGGCAAAGACCAGGCTAGAGGACTAAC  450

seq1  ATAAACATAAAGATTTGGCTTTCATCAAGTGTTTCAATTTTAGACCATGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAACATAAAGATTTGGCTTTCATCAAGTGTTTCAATTTTAGACCATGG  500

seq1  TATAGTACCAGGAACCAAAGGGCCTGGCCAGGTCTCTAAAGCTAGCGAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGTACCAGGAACCAAAGGGCCTGGCCAGGTCTCTAAAGCTAGCGAAT  550

seq1  CTTGGGAAAGCTGAAGCCAGCAGCTTCCCTCCCCCATCACTTCCAGCCAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGGAAAGCTGAAGCCAGCAGCTTCCCTCCCCCATCACTTCCAGCCAG  600

seq1  TCCGAGCGTGCGCCCTGGGACATAGCCCGCACCGGCAAGCAAGGAGGGCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCGAGCGTGCGCCCTGGGACATAGCCCGCACCGGCAAGCAAGGAGGGCT  650

seq1  TGCCTCCGAGGACAAGATGTCGCCTTCGCCGTTCACTTAGACTTAGCTCA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTCCGAGGACAAGATGTCGCCTTCGCCGTTCACTTAGACTTAGCTCA  700

seq1  AAGACTACCATATTTGACCCAGCGGTCAGGTCCCAGGCCACGCAGTGACA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGACTACCATATTTGACCCAGCGGTCAGGTCCCAGGCCACGCAGTGACA  750

seq1  GTTCAGCAATCCAGCGAGGAATCGCACTCGGTCAGTTATTTTGGCGCTGA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAGCAATCCAGCGAGGAATCGCACTCGGTCAGTTATTTTGGCGCTGA  800

seq1  GGTTTTCTGCCCGCCTTCCTATCCCCTGGCTCGGCAGCCGCTGCACATTC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTCTGCCCGCCTTCCTATCCCCTGGCTCGGCAGCCGCTGCACATTC  850

seq1  CCATTGGTCGAGATGACTGTCTATCAGTCCATTGCACACCTCCCCCAAAC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATTGGTCGAGATGACTGTCTATCAGTCCATTGCACACCTCCCCCAAAC  900

seq1  AGCCTGTCAAGCAGGCGCGTGTTAGGGAGGCGGAGCCTGTGGCTAGGGGC  950
      ||||||||||||| |||||||||| |||||||||||||||||||||||||
seq2  AGCCTGTCAAGCA-GCGCGTGTTA-GGAGGCGGAGCCTGTGGCTAGGGGC  948

seq1  GGGGCCTCGGCGGTGGAAGGCACAGCGACCGCTTCACCGCTCTGGCTCGG  1000
       ||||||||||||||||||||||||||||||||||||||||||||||| |
seq2  -GGGCCTCGGCGGTGGAAGGCACAGCGACCGCTTCACCGCTCTGGCTCCG  997

seq1  TACTGGAGCGCGGAGGCATCCCTCGCAGCAGCTGCTCCCGCTGCTGCACC  1050
      ||||||||||||||||||| |||||||||||||||| |||||||||||||
seq2  TACTGGAGCGCGGAGGCATTCCTCGCAGCAGCTGCT-CCGCTGCTGCACC  1046

seq1  TGGTCAGGTAAAAGAATCTTTCTTCCT--GACCTCCTGCCCCACTCTTCT  1098
      | |||||||||||||||||||||| ||  |||||| || |||||||||||
seq2  T-GTCAGGTAAAAGAATCTTTCTTTCTCGGACCTCTTG-CCCACTCTTCT  1094

seq1  TCCCAGCCAAAGGC-TGTCTG-CTTGG-CCTCTCC--GGCTTTGAGGTTC  1143
      |||||||  ||||| |||||| ||||| |||||||  | ||| |||||||
seq2  TCCCAGC--AAGGCTTGTCTGCCTTGGTCCTCTCCCGGCCTTGGAGGTTC  1142

seq1  TGGTCAGAGCTGTTAAGCCTCC  1165
      ||||| || ||| |||||||||
seq2  TGGTC-GAACTGGTAAGCCTCC  1163

seq1: chr2_113318035_113319006
seq2: B6Ng01-326O01.g_66_1050 (reverse)

seq1  CATCA-CTGGAG--CACGGTCCCTG-AAGGGCTGCAGTGTGGCTAGGCAT  46
      ||||| ||||||  |||| || ||| ||||||||||||||||||||||||
seq2  CATCACCTGGAGCACACGTTCACTGAAAGGGCTGCAGTGTGGCTAGGCAT  50

seq1  -AGCCCTCAACCA--CCCAGCTCCTCTCCTGGTGGGACTTA--CCTATGG  91
       ||||||||| ||  ||||||||||||||||||||||||||  |||||||
seq2  AAGCCCTCAAACAACCCCAGCTCCTCTCCTGGTGGGACTTAACCCTATGG  100

seq1  TCTTCCTCTTTGAACTGGAA-CCCCAGTATGTCTGCCTTAACTTAGCATA  140
      |||||||||||||||||||| |||||||||||||||||||||||||||||
seq2  TCTTCCTCTTTGAACTGGAACCCCCAGTATGTCTGCCTTAACTTAGCATA  150

seq1  CTGAA--TTAGAGGGATGCTCTGTTTGTTGCAATACAGACTTGTGAAACT  188
      |||||  | |||||||||||||||||||||||||||||||||||||||||
seq2  CTGAAATTAAGAGGGATGCTCTGTTTGTTGCAATACAGACTTGTGAAACT  200

seq1  GATCACACTTGTAAAAAACAGATTTGTCCCAC-AAATCTGTGGGACACAC  237
      |||||||||||||||||||||||||||||||| |||||||||||||||||
seq2  GATCACACTTGTAAAAAACAGATTTGTCCCACAAAATCTGTGGGACACAC  250

seq1  TTGTAAAAAACTGATTTGTCCCACAAAAGTCAGTGGTCACAGCATCTTGC  287
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTAAAAAACTGATTTGTCCCACAAAAGTCAGTGGTCACAGCATCTTGC  300

seq1  TTTATAGTCCTCTGCAGTGTGGATGTCTGTGTGGTTCTATGCACATTAGC  337
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATAGTCCTCTGCAGTGTGGATGTCTGTGTGGTTCTATGCACATTAGC  350

seq1  TATTCTGCTGAAAATGGAGTTGTTTCCTATACACAGCCAGTGGGGTGGTA  387
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTGCTGAAAATGGAGTTGTTTCCTATACACAGCCAGTGGGGTGGTA  400

seq1  GTTTTAGTAGCTGGCTGCAGCTCCTGTGTACATAGGGGTCATATTTTTGG  437
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTTAGTAGCTGGCTGCAGCTCCTGTGTACATAGGGGTCATATTTTTGG  450

seq1  GATGAATTTCATTATATCCAGATGAAAAGTGGACTAGAAATTTATTTTTG  487
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGAATTTCATTATATCCAGATGAAAAGTGGACTAGAAATTTATTTTTG  500

seq1  TCTTGCTTTCACCCTCAGTTCTCTCAGGAATCTCTCCTTCAAATGACAAA  537
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGCTTTCACCCTCAGTTCTCTCAGGAATCTCTCCTTCAAATGACAAA  550

seq1  TAATCTTTGCTTTCTCTGTTGATCAAGAGCCTAGAAAGGGCCCAGCATTA  587
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATCTTTGCTTTCTCTGTTGATCAAGAGCCTAGAAAGGGCCCAGCATTA  600

seq1  GAGTCTGTCTCTCTGTGTGTTTTCTTTTTTAAACAGAGTAAAAAATAGAG  637
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGTCTGTCTCTCTGTGTGTTTTCTTTTTTAAACAGAGTAAAAAATAGAG  650

seq1  CCCTGTGCTCTCAGATAGAAAGTTTCTTTTATAACCTCTCTTAACACATC  687
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGTGCTCTCAGATAGAAAGTTTCTTTTATAACCTCTCTTAACACATC  700

seq1  TGTGTTTGTTCTCTGGGGGGCATGAACTTTCAGCTCCTTGAGGACAAACG  737
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTTTGTTCTCTGGGGGGCATGAACTTTCAGCTCCTTGAGGACAAACG  750

seq1  CCTGACCTATTCTTTATCTGGCACTCACTCATGCGCCTCTTCTCTTTTTA  787
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGACCTATTCTTTATCTGGCACTCACTCATGCGCCTCTTCTCTTTTTA  800

seq1  ACCCTGCCCTCACTGCTGAACTTGGCACTTTTGGTCGTCCAGGCTGTGTC  837
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTGCCCTCACTGCTGAACTTGGCACTTTTGGTCGTCCAGGCTGTGTC  850

seq1  GAAGGGAATGAGTTCCCCTTTGCCCCAGTCCTGGCCGTATCTAACTGCTC  887
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGAATGAGTTCCCCTTTGCCCCAGTCCTGGCCGTATCTAACTGCTC  900

seq1  TCTTTCCTGTCCAAGCCTCGTCCACACCTTTGGTTGTTTGGAGGGTGGCT  937
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCCTGTCCAAGCCTCGTCCACACCTTTGGTTGTTTGGAGGGTGGCT  950

seq1  CCCAACAGGGATTCAGTTGATGCACTCTTGAATTC  972
      |||||||||||||||||||||||||||||||||||
seq2  CCCAACAGGGATTCAGTTGATGCACTCTTGAATTC  985