BAC Information

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BAC

Clone NameB6Ng01-326O20
Chromosome2 (Build37)
Map Location 23,645,741 - 23,743,746
singlet/doubletdoublet
Overlap genenone
Upstream geneApbb1ip, Pdss1, Abi1, 1200016E24Rik, Acbd5, Mastl, Yme1l1, 4931423N10Rik, LOC664835, Nxph2, LOC664822, 4921517N04Rik, LOC100039149, Sh3d2c-ps1
Downstream geneHnmt, Tbpl2, Il1f8, LOC215253, Il1f9, Il1f6, LOC620156, Il1f5, Il1f10, Il1rn, Psd4, Pax8, LOC433410, LOC664938, Cacna1b, Ehmt1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-326O20.bB6Ng01-326O20.g
ACCGA114608GA114609
length552896
definitionB6Ng01-326O20.b B6Ng01-326O20.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(23,743,193 - 23,743,746)(23,645,741 - 23,646,578)
sequence
tgagagtgtctgtcataagagctataacactgccagggaaaagaacttct
ctcccactgcttgtgccctttccccctcacttgaatccttctacctggcc
tggacagagagctctgtggctagcttccagaacactggactacagaagag
aaaatattaggcattgaactgatgataaaagaaactgatataatgatcaa
tgaacatattaaatctaaaaagttgctatcacaaatcctccaggagaact
ggaatacaatgaaaagacaaaatataagaataatatgaatagaaggagaa
gattcccagctcaaaggcccagaaaacattttcaataaaatcatagaaga
aaaattgcctaacctaaaatgaggggaaaggtgggggaaagagaagaagg
gggaagagaaatagagagataaaaggagaaaggggaaggcaatgagggaa
gagggggaagagccatgaatgagattgtttaaaaggaaggtttttaaact
ttaagacaagaaaggaaggagaacaggagaggagaaatggggggagaggg
ga
gaattccagatctctctgacacttttaacatgaaggggtgatgtgtattg
ctaaatgcttttttcagcatctaaggagaagatcatgtgatttctttctt
tgaggttgtttatatagaggatcacattgctggattttcgtatattgaac
caaccttgtatccctgggatgaagcctacttgttctcggtgaatgatggt
tttgatgtgttcttttactcagtgtgcaagcatttgattattattgcatc
catattcataagggatattggtctgtcatttttttcttttgttttttctt
tgtgtgtatcagtgcttgctgtggtgggagagctgtattttgatggtgtc
aaagtatattgtcttctgctgtttatggtatcatgcatgcttgccttcca
ccatctggttacctcttgggttagctgccctgggtgtctctggagtctac
ttcctgtgcccctgggttgcaacagatctcccaggagatctgtgtctcta
gctgtagcagatctcttgagagacttgcagactatggggtgttgagagtg
tcacacatgcagatctgcctcctgcaggtatagacctgaagggagatgta
gttagtgtgaaggggaggtgttataatcctctgggcacctttggggtctc
agctgctgtgttttagtcgggcaagtaccctacctgcttttctgactgta
tcagatctcctgagagacctatagacttgaggtgtttaagagaaaagggc
cagacaagctaatatactacctttgaatatgccagaaggaagatggagtt
aattgcatagggatggattctaatttctgggtatcttgaagggtgtcaac
tgctgtggttaagttgggtgggtatactatcagtagcattgactgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_23743193_23743746
seq2: B6Ng01-326O20.b_55_608 (reverse)

seq1  TCCCCTCTCCCCCCATTTCTCCTCTCCTGTTATCCTTCCTTTCTTGTCTT  50
      ||||||||||||||||||||||||||||||| ||||||||||||||||||
seq2  TCCCCTCTCCCCCCATTTCTCCTCTCCTGTTCTCCTTCCTTTCTTGTCTT  50

seq1  AAAGTTTAAAAACCTTCCTTTTAAACAATCTCATTCATGGCTCTTCCCCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTAAAAACCTTCCTTTTAAACAATCTCATTCATGGCTCTTCCCCC  100

seq1  TCTTCCCTCATTGCCTTCCCCTTTCTCCTTTTATCTCTCTATTTCTCTTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCCTCATTGCCTTCCCCTTTCTCCTTTTATCTCTCTATTTCTCTTC  150

seq1  CCCCTTCTTCTCTTTCCCCCACCTTTCCCCTCATTTTAGGTTAGGCAATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCTTCTTCTCTTTCCCCCACCTTTCCCCTCATTTTAGGTTAGGCAATT  200

seq1  TTTCTTCTATGATTTTATTGAAAATGTTTTCTGGGCCTTTGAGCTGGGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTCTATGATTTTATTGAAAATGTTTTCTGGGCCTTTGAGCTGGGAA  250

seq1  TCTTCTCCTTCTATTCATATTATTCTTATATTTTGTCTTTTCATTGTATT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTCCTTCTATTCATATTATTCTTATATTTTGTCTTTTCATTGTATT  300

seq1  CCAGTTCTCCTGGAGGATTTGTGATAGCAACTTTTTAGATTTAATATGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGTTCTCCTGGAGGATTTGTGATAGCAACTTTTTAGATTTAATATGTT  350

seq1  CATTGATCATTATATCAGTTTCTTTTATCATCAGTTCAATGCCTAATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATTGATCATTATATCAGTTTCTTTTATCATCAGTTCAATGCCTAATATT  400

seq1  TTCTCTTCTGTAGTCCAGTGTTCTGGAAGCTAGCCACAGAGCTCTCTGTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTTCTGTAGTCCAGTGTTCTGGAAGCTAGCCACAGAGCTCTCTGTC  450

seq1  CAGGCCAGGTAGAAGGATTCAAGTGAGGGGGAAAGGGCACAAGCAGTGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGCCAGGTAGAAGGATTCAAGTGAGGGGGAAAGGGCACAAGCAGTGGG  500

seq1  AGAGAAGTTCTTTTCCCTGGCAGTGTTATAGCTCTTATGACAGACACTCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAGTTCTTTTCCCTGGCAGTGTTATAGCTCTTATGACAGACACTCT  550

seq1  CAGA  554
      ||||
seq2  CAGA  554

seq1: chr2_23645741_23646578
seq2: B6Ng01-326O20.g_116_961

seq1  CTAAATGCTTTTTTCAGCATCTAAGGAGAAGATCATGTGATTTCTTTCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAAATGCTTTTTTCAGCATCTAAGGAGAAGATCATGTGATTTCTTTCTT  50

seq1  TGAGGTTGTTTATATAGAGGATCACATTGCTGGATTTTCGTATATTGAAC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGGTTGTTTATATAGAGGATCACATTGCTGGATTTTCGTATATTGAAC  100

seq1  CAACCTTGTATCCCTGGGATGAAGCCTACTTGTTCTCGGTGAATGATGGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCTTGTATCCCTGGGATGAAGCCTACTTGTTCTCGGTGAATGATGGT  150

seq1  TTTGATGTGTTCTTTTACTCAGTGTGCAAGCATTTGATTATTATTGCATC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGATGTGTTCTTTTACTCAGTGTGCAAGCATTTGATTATTATTGCATC  200

seq1  CATATTCATAAGGGATATTGGTCTGTCATTTTTTTCTTTTGTTTTTTCTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTCATAAGGGATATTGGTCTGTCATTTTTTTCTTTTGTTTTTTCTT  250

seq1  TGTGTGTATCAGTGCTTGCTGTGGTGGGAGAGCTGTATTTTGATGGTGTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTGTATCAGTGCTTGCTGTGGTGGGAGAGCTGTATTTTGATGGTGTC  300

seq1  AAAGTATATTGTCTTCTGCTGTTTATGGTATCATGCATGCTTGCCTTCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTATATTGTCTTCTGCTGTTTATGGTATCATGCATGCTTGCCTTCCA  350

seq1  CCATCTGGTTACCTCTTGGGTTAGCTGCCCTGGGTGTCTCTGGAGTCTAC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATCTGGTTACCTCTTGGGTTAGCTGCCCTGGGTGTCTCTGGAGTCTAC  400

seq1  TTCCTGTGCCCCTGGGTTGCAACAGATCTCCCAGGAGATCTGTGTCTCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTGTGCCCCTGGGTTGCAACAGATCTCCCAGGAGATCTGTGTCTCTA  450

seq1  GCTGTAGCAGATCTCTTGAGAGACTTGCAGACTATGGGGTGTTGAGAGTG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTAGCAGATCTCTTGAGAGACTTGCAGACTATGGGGTGTTGAGAGTG  500

seq1  TCACACATGCAGATCTGCCTCCTGCAGGTATAGACCTGAAGGGAGATGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACACATGCAGATCTGCCTCCTGCAGGTATAGACCTGAAGGGAGATGTA  550

seq1  GTTAGTGTGAAGGGGAGGTGTTATAATCCTCTGGGCACCTTTGGGGTCTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTGTGAAGGGGAGGTGTTATAATCCTCTGGGCACCTTTGGGGTCTC  600

seq1  AGCTGCTGTG-TTTAGTCGGGCAAGTACCCTACCTGCTTTTCTGACTGTA  649
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  AGCTGCTGTGTTTTAGTCGGGCAAGTACCCTACCTGCTTTTCTGACTGTA  650

seq1  TCAGATCTCCTGAGAGACCTATAGACTTGAGGTG-TTGAGAG-AAAGGGC  697
      |||||||||||||||||||||||||||||||||| || |||| |||||||
seq2  TCAGATCTCCTGAGAGACCTATAGACTTGAGGTGTTTAAGAGAAAAGGGC  700

seq1  CAGACAAGCTAATATACTACC-TTGAATATGCCAGAAGGAAGATGGAGTT  746
      ||||||||||||||||||||| ||||||||||||||||||||||||||||
seq2  CAGACAAGCTAATATACTACCTTTGAATATGCCAGAAGGAAGATGGAGTT  750

seq1  AA-TGCATAGGGATGGATTCT-ACTTCTGGGCACCTTG-AGGGTTTCAAC  793
      || |||||||||||||||||| | ||||||| | |||| ||||| |||||
seq2  AATTGCATAGGGATGGATTCTAATTTCTGGGTATCTTGAAGGGTGTCAAC  800

seq1  TGCTGTGGTT-AGTTGGGTGGGTATCCTATCTGTTGCATTGACTGC  838
      |||||||||| |||||||||||||| ||||| || |||||||||||
seq2  TGCTGTGGTTAAGTTGGGTGGGTATACTATCAGTAGCATTGACTGC  846