BAC Information

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BAC

Clone NameB6Ng01-328H06
Chromosome2 (Build37)
Map Location 56,033,938 - 56,181,964
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC666936, Kcnj3
Downstream geneLOC227920, Nr4a2, LOC100041900, LOC100042910, Gpd2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328H06.bB6Ng01-328H06.g
ACCGA115712GA115713
length1,033536
definitionB6Ng01-328H06.b B6Ng01-328H06.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(56,033,938 - 56,034,975)(56,181,594 - 56,181,964)
sequence
gaattctgtggagtaggactttgtttctctctatgatcttttcataggag
actttttctgtcatacatgttagttccaaaagatcactatgtgccaagag
atcagaggatcaagaagggggttcatgttcatgtttcatctggttctgaa
gtgaacttacttaaatggttcctccacaacacgagaaattttacacgaga
agatgagtaagtggagcagatttatgaatcagtacctgagttgctagcca
tttctccacaatttcagccctggtgctgacccaatcatggtgtatattct
cctggaatgtaatccaggaacctgttcccattttcccacaagagtacttg
aaagtctcaccatattgctctaatctatttatgtggcaattggacttact
acctagaaaagtaggttatggtgtgttccattaaagcactcaaaggtggg
gatgctggaagagctaaggactgtacttagctatatagcagacattgatt
ttgggttaaatacaaatctgttcaacgacatttctgagcactgtgtggct
gtagcaacaagcaagcaatcttttgcaagtagaagttctctctctcattg
gctctgcattaagcagacacttactgattggcagcatccatcacaatctt
ctcttcaggccatatcaatcaatctttgttgtcatctgagaagacagagt
tagaagatttaaaaactgtatatatgcagaaggctacactgcacaggact
cccaggattttagttcttgataaccatttgaaaacacagaaacatataaa
tggggtctttctgcagtttttctaccacagaaaaatgtccaacaatcctg
agagtagagaccaggttcgtcttttcgaacaattgggaagaatatttaaa
cagccttagaagttcctgaagtaaagctgagagatggctcagtagtctga
atgcttactgctcgtacagagatcagacaaacacatgtggctcactgcat
ctgttagttccagttccgggacgatctgacacc
gaattcccaatgtcatatatgatgtatattacagtctcttttgtattcaa
ataatagacttccctcattttctctagatctgtagacaaaatgggatgta
aacttgcttgtttcctgtctcattatcaggatgggatcctgagaacattg
ccttcatttcttagacttcaatgtcttaaaaattgttttcttctatagtt
ttttctttgaaaaatgtttaattatttgagaatttcacaaaatgcattgt
ggtcataactattcctcttctctaactccttccagattctctaatacatg
ctttcttactcaatttcaaaactctctctctctctctctctctctctctc
tctctctctctctctctctctgtgtgggactcaatgtatgaattatgctt
ttgtaacttttcttttataaatgtggttgccttgcatttggggtatagat
attcagaattgaggagtcctttttgttagatttttccttaactgagtatg
aagtatcctttcatatcttttttgattaattttggt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_56033938_56034975
seq2: B6Ng01-328H06.b_45_1077

seq1  GAATTCTGTGGAGTAGGACTTTGTTTCTCTCTATGATCTTTTCATAGGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTGTGGAGTAGGACTTTGTTTCTCTCTATGATCTTTTCATAGGAG  50

seq1  ACTTTTTCTGTCATACATGTTAGTTCCAAAAGATCACTATGTGCCAAGAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTTTCTGTCATACATGTTAGTTCCAAAAGATCACTATGTGCCAAGAG  100

seq1  ATCAGAGGATCAAGAAGGGGGTTCATGTTCATGTTTCATCTGGTTCTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAGAGGATCAAGAAGGGGGTTCATGTTCATGTTTCATCTGGTTCTGAA  150

seq1  GTGAACTTACTTAAATGGTTCCTCCACAACACGAGAAATTTTACACGAGA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGAACTTACTTAAATGGTTCCTCCACAACACGAGAAATTTTACACGAGA  200

seq1  AGATGAGTAAGTGGAGCAGATTTATGAATCAGTACCTGAGTTGCTAGCCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAGTAAGTGGAGCAGATTTATGAATCAGTACCTGAGTTGCTAGCCA  250

seq1  TTTCTCCACAATTTCAGCCCTGGTGCTGACCCAATCATGGTGTATATTCT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTCCACAATTTCAGCCCTGGTGCTGACCCAATCATGGTGTATATTCT  300

seq1  CCTGGAATGTAATCCAGGAACCTGTTCCCATTTTCCCACAAGAGTACTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGGAATGTAATCCAGGAACCTGTTCCCATTTTCCCACAAGAGTACTTG  350

seq1  AAAGTCTCACCATATTGCTCTAATCTATTTATGTGGCAATTGGACTTACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTCTCACCATATTGCTCTAATCTATTTATGTGGCAATTGGACTTACT  400

seq1  ACCTAGAAAAGTAGGTTATGGTGTGTTCCATTAAAGCACTCAAAGGTGGG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTAGAAAAGTAGGTTATGGTGTGTTCCATTAAAGCACTCAAAGGTGGG  450

seq1  GATGCTGGAAGAGCTAAGGACTGTACTTAGCTATATAGCAGACATTGATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGCTGGAAGAGCTAAGGACTGTACTTAGCTATATAGCAGACATTGATT  500

seq1  TTGGGTTAAATACAAATCTGTTCAACGACATTTCTGAGCACTGTGTGGCT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGTTAAATACAAATCTGTTCAACGACATTTCTGAGCACTGTGTGGCT  550

seq1  GTAGCAACAAGCAAGCAATCTTTTGCAAGTAGAAGTTCTCTCTCTCATTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGCAACAAGCAAGCAATCTTTTGCAAGTAGAAGTTCTCTCTCTCATTG  600

seq1  GCTCTGCATTAAGCAGACACTTACTGATTGGCAGCATCCATCACAATCTT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTGCATTAAGCAGACACTTACTGATTGGCAGCATCCATCACAATCTT  650

seq1  CTCTTCAGGCCATATCAATCAATCTTTGTTGTCATCTGAGAAGACAGAGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCAGGCCATATCAATCAATCTTTGTTGTCATCTGAGAAGACAGAGT  700

seq1  TAGAAGATTTAAAAACTGTATATATGCAGAAGGCTACACTGCACAGGACT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGATTTAAAAACTGTATATATGCAGAAGGCTACACTGCACAGGACT  750

seq1  CCCAGGATTTTAGTTCTTGATAACCATTTGAAAACACAGAAACATATAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCAGGATTTTAGTTCTTGATAACCATTTGAAAACACAGAAACATATAAA  800

seq1  TGGGGTCTTTCTGCAGTTTTTCTACCACAGAAAAATGTCCAACAATCCTG  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGGTCTTTCTGCAGTTTTTCTACCACAGAAAAATGTCCAACAATCCTG  850

seq1  AGAGTAGAGACCAGGTTCGTCTTTTCGAACAATTGGGAAGAATATTTAAA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGTAGAGACCAGGTTCGTCTTTTCGAACAATTGGGAAGAATATTTAAA  900

seq1  CAGCCTTAGAAGTTCCTGAAGTAAAGCTGAAGAGATGGCTCAGTAGTTCT  950
      ||||||||||||||||||||||||||||| |||||||||||||||| |||
seq2  CAGCCTTAGAAGTTCCTGAAGTAAAGCTG-AGAGATGGCTCAGTAG-TCT  948

seq1  GAATGCTTACTGCTCTTCCAGAAGATCAGACAAAACACATGTGGCTCACA  1000
      ||||||||||||||| | ||| ||||||||| ||||||||||||||||| 
seq2  GAATGCTTACTGCTCGTACAG-AGATCAGAC-AAACACATGTGGCTCAC-  995

seq1  ACCATCTGTTAG-TCCAGTTCCAGGGAGGATCTGACACC  1038
        |||||||||| ||||||||| |||| |||||||||||
seq2  TGCATCTGTTAGTTCCAGTTCC-GGGACGATCTGACACC  1033

seq1: chr2_56181594_56181964
seq2: B6Ng01-328H06.g_63_433 (reverse)

seq1  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG  50

seq1  TTTTGAAATTGAGTAAGAAAGCATGTATTAGAGAATCTGGAAGGAGTTAG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTGAAATTGAGTAAGAAAGCATGTATTAGAGAATCTGGAAGGAGTTAG  100

seq1  AGAAGAGGAATAGTTATGACCACAATGCATTTTGTGAAATTCTCAAATAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAGAGGAATAGTTATGACCACAATGCATTTTGTGAAATTCTCAAATAA  150

seq1  TTAAACATTTTTCAAAGAAAAAACTATAGAAGAAAACAATTTTTAAGACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAAACATTTTTCAAAGAAAAAACTATAGAAGAAAACAATTTTTAAGACA  200

seq1  TTGAAGTCTAAGAAATGAAGGCAATGTTCTCAGGATCCCATCCTGATAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTCTAAGAAATGAAGGCAATGTTCTCAGGATCCCATCCTGATAAT  250

seq1  GAGACAGGAAACAAGCAAGTTTACATCCCATTTTGTCTACAGATCTAGAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGACAGGAAACAAGCAAGTTTACATCCCATTTTGTCTACAGATCTAGAG  300

seq1  AAAATGAGGGAAGTCTATTATTTGAATACAAAAGAGACTGTAATATACAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATGAGGGAAGTCTATTATTTGAATACAAAAGAGACTGTAATATACAT  350

seq1  CATATATGACATTGGGAATTC  371
      |||||||||||||||||||||
seq2  CATATATGACATTGGGAATTC  371