BAC Information

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BAC

Clone NameB6Ng01-328K01
Chromosome2 (Build37)
Map Location 138,489,161 - 138,617,067
singlet/doubletdoublet
Overlap genenone
Upstream geneBtbd3
Downstream geneLOC628103, C130053K05Rik, LOC100043792, 5430433G21Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-328K01.bB6Ng01-328K01.g
ACCGA115837GA115838
length1,121853
definitionB6Ng01-328K01.b B6Ng01-328K01.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(138,489,161 - 138,490,262)(138,616,215 - 138,617,067)
sequence
gaattcctgatctttccaagacttttatcatgaatgggtgttggatttta
tcaaatgctttctcagcatctaacaagatgatcatatggtttttgtcttt
gtgtatttgtttatataatagattacattaatggatttccttatattgaa
ccatccctgcattcatgggatgaagcctacttgatcatgatggatattcg
ttttgatgtgttcttggattcagttagtgagaattttattgagtattttt
gcattgatattcataagggaaattggtctgaagttctctttctttgttgg
gtttttgtgtggttcaggtatcagtgtaattgtggcttcatagaatgaat
tgggtagagtaccttctgcttctattttgtggtatagtgtgaggagtatt
ggaattaggtcgtctttgaaggtctgatagaattctgaactactaaaccc
atctggtcctgggctttttttggctgggagactattaatggctgcttcta
tttctttaggggatatggcccagtccctgacccagctgctctgctttttc
tgcaggctgtgcactcctgagtggacccaccttagagagtgactgaagag
aacctgagatctcacctgagtcccagggtcagacacttcctagaggcaag
ttctcctcttgcagggaaggtgcactgaagatcagccccacctcctgggt
gcagatgtaggccagtaggtccctgtcctagaagctctgctgcttctgag
gcctgtgctctcctgagtggaccggctttagagagtcatcaaagagatgg
tctgagttattcttactgggtctcttgaaccaccttggaccctgggatgc
tatctgaaatgatcttcagcatggtccttttcgaacatgctagctaactt
ctttgaggaaaggagggaagtctattctttagaaagtctcttttatttta
agaatgttcacttgatgaactcaatccatcctagataatcttccatcatt
tcaaatcaatgagttaagacattaattattatctgaaaaatcacattact
tttgcacgaatctttcatggaaggtatagattccccttacaggccaggga
tcttgacaaaggcagtataac

gaattctaaatgggtcatttctctattgattcagtattgtatggaaatac
acatgaactcaaatttttaaaatgtatttggactttacctatatgattgt
tttgcccacatgtatgactgtgcaccaaatatacaagtgttgcctctgga
gagtggaagagaccatagcttctctggatctggagttaacagatagcttt
gtgctatcaggtaggtgttggataatgaattaggaacctctgcaaaaata
gcaaatgttcttaccactgaaccttgtctgtagtctctgaacttaagttc
tgagaggattgttataataatttatttcttatcaagtagcactttgagaa
ttggtatttctcttggtaagatgtgaaaggcattttaacatattttcaat
aactttatattctaagcagaaacttttggcacctagcaggaaggtgttga
tattcactgtaaacaaaattctctcccattctttcctgttcctcataaaa
aagtgaagctaggctgccttgtttacctcttttcctattatcaaggcaaa
aaatatcctaagtgtgtgtgtatgtgtgtgtgtttatgtgatgtatgtgt
gcattatttttctgtgcctgctgatattactctttggaaaatgaaaccta
gaactgacctttcagagaaggaaaacaggcatctgatagctatttgtacc
acgagctatgccttgtcataagtaactacgtttttatttgaaaatcttta
tgctttaaaacttgataaaaccatctacttataaatgaaacagtagaaag
acacatactttttatacccctccatattctctgttaatttcatgagtgta
tct
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_138489161_138490262
seq2: B6Ng01-328K01.b_68_1166

seq1  TTTTATCATGAATGGGTGTTGGATTTTATCAAATGCTTTCTCAGCATCTA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCATGAATGGGTGTTGGATTTTATCAAATGCTTTCTCAGCATCTA  50

seq1  ACAAGATGATCATATGGTTTTTGTCTTTGTGTATTTGTTTATATAATAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGATGATCATATGGTTTTTGTCTTTGTGTATTTGTTTATATAATAGA  100

seq1  TTACATTAATGGATTTCCTTATATTGAACCATCCCTGCATTCATGGGATG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACATTAATGGATTTCCTTATATTGAACCATCCCTGCATTCATGGGATG  150

seq1  AAGCCTACTTGATCATGATGGATATTCGTTTTGATGTGTTCTTGGATTCA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCCTACTTGATCATGATGGATATTCGTTTTGATGTGTTCTTGGATTCA  200

seq1  GTTAGTGAGAATTTTATTGAGTATTTTTGCATTGATATTCATAAGGGAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAGTGAGAATTTTATTGAGTATTTTTGCATTGATATTCATAAGGGAAA  250

seq1  TTGGTCTGAAGTTCTCTTTCTTTGTTGGGTTTTTGTGTGGTTCAGGTATC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGTCTGAAGTTCTCTTTCTTTGTTGGGTTTTTGTGTGGTTCAGGTATC  300

seq1  AGTGTAATTGTGGCTTCATAGAATGAATTGGGTAGAGTACCTTCTGCTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGTAATTGTGGCTTCATAGAATGAATTGGGTAGAGTACCTTCTGCTTC  350

seq1  TATTTTGTGGTATAGTGTGAGGAGTATTGGAATTAGGTCGTCTTTGAAGG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTGTGGTATAGTGTGAGGAGTATTGGAATTAGGTCGTCTTTGAAGG  400

seq1  TCTGATAGAATTCTGAACTACTAAACCCATCTGGTCCTGGGCTTTTTTTG  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGATAGAATTCTGAACTACTAAACCCATCTGGTCCTGGGCTTTTTTTG  450

seq1  GCTGGGAGACTATTAATGGCTGCTTCTATTTCTTTAGGGGATATGGCCCA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGGGAGACTATTAATGGCTGCTTCTATTTCTTTAGGGGATATGGCCCA  500

seq1  GTCCCTGACCCAGCTGCTCTGCTTTTTCTGCAGGCTGTGCACTCCTGAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCCTGACCCAGCTGCTCTGCTTTTTCTGCAGGCTGTGCACTCCTGAGT  550

seq1  GGACCCACCTTAGAGAGTGACTGAAGAGAACCTGAGATCTCACCTGAGTC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACCCACCTTAGAGAGTGACTGAAGAGAACCTGAGATCTCACCTGAGTC  600

seq1  CCAGGGTCAGACACTTCCTAGAGGCAAGTTCTCCTCTTGCAGGGAAGGTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGGGTCAGACACTTCCTAGAGGCAAGTTCTCCTCTTGCAGGGAAGGTG  650

seq1  CACTGAAGATCAGCCCCACCTCCTGGGTGCAGATGTAGGCCAGTAGGTCC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGAAGATCAGCCCCACCTCCTGGGTGCAGATGTAGGCCAGTAGGTCC  700

seq1  CTGTCCTAGAAGCTCTGCTGCTTCTGAGGCCTGTGCTCTCCTGAGTGGAC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTCCTAGAAGCTCTGCTGCTTCTGAGGCCTGTGCTCTCCTGAGTGGAC  750

seq1  CGGCTTTAGAGAGTCATCAAAGAGATGGTCTGAGTTATTCTTACTGGGTC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGGCTTTAGAGAGTCATCAAAGAGATGGTCTGAGTTATTCTTACTGGGTC  800

seq1  TCTTGAACCACCTTGGACCCTGGGATGCTATCTGAAATGATCTTCAGCAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGAACCACCTTGGACCCTGGGATGCTATCTGAAATGATCTTCAGCAT  850

seq1  GGTCCTTTTCGAACATGCTAGCTAACTTCTTTGAGGAAAGGAGGGAAGTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCTTTTCGAACATGCTAGCTAACTTCTTTGAGGAAAGGAGGGAAGTC  900

seq1  TATTCTTTAGAAAGTCTCTTTTATTTTAAGAATGTTCACTTGATGAACTC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTCTTTAGAAAGTCTCTTTTATTTTAAGAATGTTCACTTGATGAACTC  950

seq1  AAATCCATCCTAGATAATCTTCCATCATTTCAAATCAATGAGTTTAGGAC  1000
       ||||||||||||||||||||||||||||||||||||||||| ||| |||
seq2  -AATCCATCCTAGATAATCTTCCATCATTTCAAATCAATGAG-TTAAGAC  998

seq1  ATTAATTA-TATCTGAAAAATCACATTACTTTTGCAGAAATCTTTCAGTG  1049
      |||||||| |||||||||||||||||||||||||||  |||||||||  |
seq2  ATTAATTATTATCTGAAAAATCACATTACTTTTGCACGAATCTTTCATGG  1048

seq1  AAGGTATAGATCCCACATTACAGGCAAGGGATCTAGACAAAGGCAGGGAT  1099
      ||||||||||| || | |||||||| |||||||| |||||||||| | ||
seq2  AAGGTATAGATTCC-CCTTACAGGCCAGGGATCTTGACAAAGGCA-GTAT  1096

seq1  AAC  1102
      |||
seq2  AAC  1099


seq1: chr2_138616215_138617067
seq2: B6Ng01-328K01.g_66_918 (reverse)

seq1  AGATACACTCATGAAATTAACAGAGATGATGGTGGGGCTATAAATATGTA  50
      ||||||||||||||||||||||||||  |||| |||| |||||| | |||
seq2  AGATACACTCATGAAATTAACAGAGAATATGGAGGGG-TATAAA-AAGTA  48

seq1  TGTGTCTTTCTACTGTTTCATTTATAAGTAGATGGTTTTATCAAGTTTTA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGTCTTTCTACTGTTTCATTTATAAGTAGATGGTTTTATCAAGTTTTA  98

seq1  AAGCATAAAGATTTTCACTAAAAAACGTAGTTACTTATGACAAGGCATAG  150
      |||||||||||||||||   ||||||||||||||||||||||||||||||
seq2  AAGCATAAAGATTTTCAAATAAAAACGTAGTTACTTATGACAAGGCATAG  148

seq1  CTCGTGGTACAAATAGCTATCAGATGCCTGTTTTCCTTCTCTG-AAGGTC  199
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CTCGTGGTACAAATAGCTATCAGATGCCTGTTTTCCTTCTCTGAAAGGTC  198

seq1  AGTTCTAGGTTTCATTTTCCAAAGAGTAATATCAGCAGGCACAG-AAAAT  248
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  AGTTCTAGGTTTCATTTTCCAAAGAGTAATATCAGCAGGCACAGAAAAAT  248

seq1  AATGCACACATACATCACATAAACACACACACATACACACACACTTAGGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGCACACATACATCACATAAACACACACACATACACACACACTTAGGA  298

seq1  TATTTTTTGCCTTGATAATAGGAAAAGAGGTAAACAAGGCAGCCTAGCTT  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTTGCCTTGATAATAGGAAAAGAGGTAAACAAGGCAGCCTAGCTT  348

seq1  CACTTTTTTATGAGGAACAGGAAAGAATGGGAGAGAATTTTGTTTACAGT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTTTTTTATGAGGAACAGGAAAGAATGGGAGAGAATTTTGTTTACAGT  398

seq1  GAATATCAACACCTTCCTGCTAGGTGCCAAAAGTTTCTGCTTAGAATATA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATATCAACACCTTCCTGCTAGGTGCCAAAAGTTTCTGCTTAGAATATA  448

seq1  AAGTTATTGAAAATATGTTAAAATGCCTTTCACATCTTACCAAGAGAAAT  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTATTGAAAATATGTTAAAATGCCTTTCACATCTTACCAAGAGAAAT  498

seq1  ACCAATTCTCAAAGTGCTACTTGATAAGAAATAAATTATTATAACAATCC  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATTCTCAAAGTGCTACTTGATAAGAAATAAATTATTATAACAATCC  548

seq1  TCTCAGAACTTAAGTTCAGAGACTACAGACAAGGTTCAGTGGTAAGAACA  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCAGAACTTAAGTTCAGAGACTACAGACAAGGTTCAGTGGTAAGAACA  598

seq1  TTTGCTATTTTTGCAGAGGTTCCTAATTCATTATCCAACACCTACCTGAT  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGCTATTTTTGCAGAGGTTCCTAATTCATTATCCAACACCTACCTGAT  648

seq1  AGCACAAAGCTATCTGTTAACTCCAGATCCAGAGAAGCTATGGTCTCTTC  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCACAAAGCTATCTGTTAACTCCAGATCCAGAGAAGCTATGGTCTCTTC  698

seq1  CACTCTCCAGAGGCAACACTTGTATATTTGGTGCACAGTCATACATGTGG  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCTCCAGAGGCAACACTTGTATATTTGGTGCACAGTCATACATGTGG  748

seq1  GCAAAACAATCATATAGGTAAAGTCCAAATACATTTTAAAAATTTGAGTT  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAACAATCATATAGGTAAAGTCCAAATACATTTTAAAAATTTGAGTT  798

seq1  CATGTGTATTTCCATACAATACTGAATCAATAGAGAAATGACCCATTTAG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATGTGTATTTCCATACAATACTGAATCAATAGAGAAATGACCCATTTAG  848

seq1  AATTC  853
      |||||
seq2  AATTC  853


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