BAC Information

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BAC

Clone NameB6Ng01-331I08
Chromosome2 (Build37)
Map Location 159,546,402 - 159,547,539
singlet/doubletsinglet
Overlap genenone
Upstream genePpp1r16b, 2310007D09Rik, Dhx35, LOC100043891
Downstream geneLOC100043689, Gm826, Mafb, LOC100043892, Top1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-331I08.bB6Ng01-331I08.g
ACCGA117863GA117864
length1,1941,142
definitionB6Ng01-331I08.b B6Ng01-331I08.g
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtgagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgaggatgtggagaaagaggaacactcctccattgttggtg
gaattgcaggcttgtacaaccactctggaaatcagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagaagccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaaactggaaagaacccagat
gcccctcaacagaggaatggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctggagagcatcatcctgagtgaggtaacacaatcacaaa
ggaactcacacaatatgtactcactgataagtggatactagcccaaaacc
taggatacccacgatataagatacaatttcctaaacacatgaaactcaag
aaaaatgaagactgaagtgtggacactatgcccctccttagaagtgggaa
caaaacacccatggaaggagttacagaaacaaagtttggagctgagatga
aaggatggaccatgtagagactgccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatatactagcaagattttatcgaaa
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatggatcacagggctccca
atggaggagctagagaaagtacccaaggagctaagggatcttcaccctat
aggtggaacacattatgaactaaccagtacccctgagcttcttgactcta
gctgcatatgtattcaaagatggcctagtcgcattcactggaagagagcc
catgtacacgcagacctttggtgttactcggtacagggtacgtcagtcta
tgcgggactggctggctagtctatttagtagcaagctatcagac
gaattctctccttggcatattttggtgagtgtgtctgtgtgtggtgtaga
taagccacatgctgttttcatcttttccgttgatggatgcttgtgctact
gtgagtaatactacaaaaatgtgagtatgaagacatttccttagtaaact
aggatcatttctcttaggtttataacctgaaggacttatgactcatttgg
tagcttattctaattattctaaggcactgccatattctgtccctaatagc
tgtatatgacattcgttgccaacactttgcaagggctttctctttttttt
ctcatccgttttaacactggttataattttaacgacatttattatgagat
gagatgttgggaccataaaaatcaattcactatgattgctaatgttgatc
atttattataattactgcatacaattgtgtctccttttaagaaataacaa
aacatttctttgttttgtttctgttttaaattggattattttattactgt
tgaattgtctgaatgcctcatatattctagatattaactcctgtcagggt
catagtttgaaaatacttttccttcactctactgataatttcctctgcca
ttcagaagaatatgtctctaatgtggtgtaattcagtttctttattctca
gtttggagcttgtggattctagacagttgatcaaaagccattgctcacat
gagtgtctcacagatttttttctgtcatcttctaacagtttcatagctca
gagtcttagtttaaatccttaatccatttttatggacttttctagaatgg
gagatgatagactctctttcatttctccacctgaatgtggatataagctt
tctcaacagtattttatcaagaaactttctttcaccattgtctgttcttg
gtgcctttgttgataatcagtcagcaagaaataaatgggaatgggtttat
ctggggatctctttccaccttcattactctgtctgtttcaatgcctagtg
ccataaccatttttgttactatagtttggtaacgtaattttaaattaagg
acaatcattttaagtcaaaggaacttgttcccttttgtgtggattcataa
atattaacgaattggcaaagtcatgatatccttaaatgcatg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_159546402_159547539
seq2: B6Ng01-331I08.g_68_1209 (reverse)

seq1  CATGCATTTAAGAAATATCATGACTTTTCC-ATTCG-TAATATTTAATTT  48
      ||||||||||||  ||||||||||||| || ||||| |||||||||  | 
seq2  CATGCATTTAAG-GATATCATGACTTTGCCAATTCGTTAATATTTA--TG  47

seq1  AATTCACACAAAAAGGACAAAGTTCCCTTGACTTAAAATGA-TGTTCCTA  97
      ||| ||||||||| |||  ||||||| |||||||||||||| ||| | ||
seq2  AATCCACACAAAAGGGAACAAGTTCCTTTGACTTAAAATGATTGTCCTTA  97

seq1  ATTTAAAATTACGTTACAAAACTATAGTAACAAAAATGG-TATGGCACTA  146
      ||||||||||||||||| ||||||||||||||||||||| ||||||||||
seq2  ATTTAAAATTACGTTACCAAACTATAGTAACAAAAATGGTTATGGCACTA  147

seq1  -GCATTGAAACAGACAGAGTAATGAGGTGGGAAAGAGAT-CCCAGATAAA  194
       |||||||||||||||||||||||| |  |||||||||| ||||||||||
seq2  GGCATTGAAACAGACAGAGTAATGAAGGTGGAAAGAGATCCCCAGATAAA  197

seq1  ACCA-TCCCATTTATGTCTTGCTGACTGATTATCAACAAAGGCACCAAGA  243
       ||| |||||||||| ||||||||||||||||||||||||||||||||||
seq2  CCCATTCCCATTTATTTCTTGCTGACTGATTATCAACAAAGGCACCAAGA  247

seq1  ACAGACAATGGTGAAAGAAAGTTTCTTGAT-AAATACTGTTGAGAAAAGC  292
      |||||||||||||||||||||||||||||| ||||||||||||| |||||
seq2  ACAGACAATGGTGAAAGAAAGTTTCTTGATAAAATACTGTTGAG-AAAGC  296

seq1  TTATATCCACATTCAGGTGGAGAAATGAAAGAGAGTCTATCATCTCCCAT  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATATCCACATTCAGGTGGAGAAATGAAAGAGAGTCTATCATCTCCCAT  346

seq1  TCTAGAAAAGTCCATAAAAATGGATTAAGGATTTAAACTAAGACTCTGAG  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGAAAAGTCCATAAAAATGGATTAAGGATTTAAACTAAGACTCTGAG  396

seq1  CTATGAAACTGTTAGAAGATGACAGAAAAAAATCTGTGAGACACTCATGT  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGAAACTGTTAGAAGATGACAGAAAAAAATCTGTGAGACACTCATGT  446

seq1  GAGCAATGGCTTTTGATCAACTGTCTAGAATCCACAAGCTCCAAACTGAG  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCAATGGCTTTTGATCAACTGTCTAGAATCCACAAGCTCCAAACTGAG  496

seq1  AATAAAGAAACTGAATTACACCACATTAGAGACATATTCTTCTGAATGGC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAAAGAAACTGAATTACACCACATTAGAGACATATTCTTCTGAATGGC  546

seq1  AGAGGAAATTATCAGTAGAGTGAAGGAAAAGTATTTTCAAACTATGACCC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGGAAATTATCAGTAGAGTGAAGGAAAAGTATTTTCAAACTATGACCC  596

seq1  TGACAGGAGTTAATATCTAGAATATATGAGGCATTCAGACAATTCAACAG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGGAGTTAATATCTAGAATATATGAGGCATTCAGACAATTCAACAG  646

seq1  TAATAAAATAATCCAATTTAAAACAGAAACAAAACAAAGAAATGTTTTGT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATAAAATAATCCAATTTAAAACAGAAACAAAACAAAGAAATGTTTTGT  696

seq1  TATTTCTTAAAAGGAGACACAATTGTATGCAGTAATTATAATAAATGATC  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTCTTAAAAGGAGACACAATTGTATGCAGTAATTATAATAAATGATC  746

seq1  AACATTAGCAATCATAGTGAATTGATTTTTATGGTCCCAACATCTCATCT  792
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATTAGCAATCATAGTGAATTGATTTTTATGGTCCCAACATCTCATCT  796

seq1  CATAATAAATGTCGTTAAAATTATAACCAGTGTTAAAACGGATGAGAAAA  842
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATAATAAATGTCGTTAAAATTATAACCAGTGTTAAAACGGATGAGAAAA  846

seq1  AAAAGAGAAAGCCCTTGCAAAGTGTTGGCAACGAATGTCATATACAGCTA  892
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAGAAAGCCCTTGCAAAGTGTTGGCAACGAATGTCATATACAGCTA  896

seq1  TTAGGGACAGAATATGGCAGTGCCTTAGAATAATTAGAATAAGCTACCAA  942
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGGACAGAATATGGCAGTGCCTTAGAATAATTAGAATAAGCTACCAA  946

seq1  ATGAGTCATAAGTCCTTCAGGTTATAAACCTAAGAGAAATGATCCTAGTT  992
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGTCATAAGTCCTTCAGGTTATAAACCTAAGAGAAATGATCCTAGTT  996

seq1  TACTAAGGAAATGTCTTCATACTCACATTTTTGTAGTATTACTCACAGTA  1042
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACTAAGGAAATGTCTTCATACTCACATTTTTGTAGTATTACTCACAGTA  1046

seq1  GCACAAGCATCCATCAACGGAAAAGATGAAAACAGCATGTGGCTTATCTA  1092
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACAAGCATCCATCAACGGAAAAGATGAAAACAGCATGTGGCTTATCTA  1096

seq1  CACCACACACAGACACACTCACCAAAATATGCCAAGGAGAGAATTC  1138
      ||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCACACACAGACACACTCACCAAAATATGCCAAGGAGAGAATTC  1142