BAC Information

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BAC

Clone NameB6Ng01-332M11
Chromosome2 (Build37)
Map Location 80,344,300 - 80,345,348
singlet/doubletsinglet
Overlap geneNckap1
Upstream geneSsfa2, Ppp1r1c, Pde1a, LOC668005, Prdx6-rs1, Dnajc10, Frzb
Downstream geneLOC624223, Dusp19, LOC672381, Nup35, LOC103324, LOC668027, LOC100040624, LOC100040655
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-332M11.bB6Ng01-332M11.g
ACCGA118784GA118785
length1,057857
definitionB6Ng01-332M11.b B6Ng01-332M11.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcccagccatcgccgttatttgctactaatgtccaagaactcctcg
cagccatgtctgatgggcacacttaacactactctctcttggcagcaagt
caagatattctcccggtaatgatcattatcacccaaagcagaggatcctc
cccttgaagcactgtctaaagcccacctccaacgtccaccaatgtctaca
tcgtcacctccatttacctcacacacaccagtgtcatctcagggtcacaa
gaagggtggacataagacaacaaagcatttcgagggacttcactctccta
actgttattatggcatgcaaactggtgaaacctttctattatttccatta
ataatgtattgtactctaatactttcctgtgtgtgcatggatgcatacag
ttcagtactattcctggcttcaagtaccctcttggcgtggggaactcaga
aagcataatctatacatgagaggtgaacacactgtgtactttttagatcc
taaataaggcaatttcaatctgggtttgtattcatagtaattttaaggac
attaactccccaagtaaagtaaataaaaggaaaacaacagaattataata
atgttttcaaacttgagttccttcttaaataactgttgtatttgcatata
tgtatttatatatgtgtacatatatatgtgtgtgtgtgtgtgtgtatata
tataaaaaccaacatgattttcaacaaagaaaaaaactaaatattctagg
gttcattttgcttaaattatctgttctttaagcaattatgaaaaagaagc
attggtaaagaaaaatactgcactaaaccatgtctggtgacagatttaac
attactctcttttggtagcagccacatgtaattttatggtttgtttgttt
gtttatgtgcatatgtataatgccttcatgactgtgtacaagtgggcatc
aaatcccaagaacttgtagtgaactgtagtgaggtagtgagaatgtctaa
tggtgggttgctagggagcagtaacctttggaagaacattaaagaatacc
gtaactg

gaattcctgatttgattaaaataattttaggaagaaggtttttggaagat
ggctttagctgttttgtcagaaagatataataagtcagaatcaagaacga
aatgtgcccagtctcatagaataataagtaaaggctgcataataaggaat
acagtgagctttcacaatcacactaaaaagagaaataggcttgggacaga
tgtgtgatcaaggggaagcattcattttaggtcgggtttaaggatgaagc
cacagctgtgcactgtgatgaagcaaggccatgtggaactattgctttgt
ctctataataagcttaaagatgaagcactgctttatatttgtcttagggt
tttactgcactgaacagacaccatgaccaaggcaactcttataaggacaa
catttaattggggctggcttacaggttcagactttcagtccattatcatc
aaggtgggagcatggcagcttccaggcaggcatggtgcaggaggagctga
gagttctacatcttcatctgaagactgctagcagaatactgacttctagg
cagctacgatgagggtcttaaagctcatacccacagtgacacacctactc
caacagggccacacctcctaacagtgccactccctgggcctagcatatac
aaaccatcacagtacctaactatcaacatccttctgtaactccccttttg
tgtaacactttatgaggtaattttctaaggccttttgtctaagagtgtat
aagaaggccagagaggaggaataaagtgtgacagctgaggctctgccatc
taccctccaaatatgtggcatttggggctcagctccatccaccaaaatgt
gtgtgtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_80344300_80345348
seq2: B6Ng01-332M11.b_48_1104

seq1  GAATTCCCAGCCATCGCCGTTATTTGCTACTAATGTCCAAGAACTCCTCG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCCAGCCATCGCCGTTATTTGCTACTAATGTCCAAGAACTCCTCG  50

seq1  CAGCCATGTCTGATGGGCACACTTAACACTACTCTCTCTTGGCAGCAAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCATGTCTGATGGGCACACTTAACACTACTCTCTCTTGGCAGCAAGT  100

seq1  CAAGATATTCTCCCGGTAATGATCATTATCACCCAAAGCAGAGGATCCTC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATATTCTCCCGGTAATGATCATTATCACCCAAAGCAGAGGATCCTC  150

seq1  CCCTTGAAGCACTGTCTAAAGCCCACCTCCAACGTCCACCAATGTCTACA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTTGAAGCACTGTCTAAAGCCCACCTCCAACGTCCACCAATGTCTACA  200

seq1  TCGTCACCTCCATTTACCTCACACACACCAGTGTCATCTCAGGGTCACAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCGTCACCTCCATTTACCTCACACACACCAGTGTCATCTCAGGGTCACAA  250

seq1  GAAGGGTGGACATAAGACAACAAAGCATTTCGAGGGACTTCACTCTCCTA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGGTGGACATAAGACAACAAAGCATTTCGAGGGACTTCACTCTCCTA  300

seq1  ACTGTTATTATGGCATGCAAACTGGTGAAACCTTTCTATTATTTCCATTA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTTATTATGGCATGCAAACTGGTGAAACCTTTCTATTATTTCCATTA  350

seq1  ATAATGTATTGTACTCTAATACTTTCCTGTGTGTGCATGGATGCATACAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAATGTATTGTACTCTAATACTTTCCTGTGTGTGCATGGATGCATACAG  400

seq1  TTCAGTACTATTCCTGGCTTCAAGTACCCTCTTGGCGTGGGGAACTCAGA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGTACTATTCCTGGCTTCAAGTACCCTCTTGGCGTGGGGAACTCAGA  450

seq1  AAGCATAATCTATACATGAGAGGTGAACACACTGTGTACTTTTTAGATCC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGCATAATCTATACATGAGAGGTGAACACACTGTGTACTTTTTAGATCC  500

seq1  TAAATAAGGCAATTTCAATCTGGGTTTGTATTCATAGTAATTTTAAGGAC  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAATAAGGCAATTTCAATCTGGGTTTGTATTCATAGTAATTTTAAGGAC  550

seq1  ATTAACTCCCCAAGTAAAGTAAATAAAAGGAAAACAACAGAATTATAATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAACTCCCCAAGTAAAGTAAATAAAAGGAAAACAACAGAATTATAATA  600

seq1  ATGTTTTCAAACTTGAGTTCCTTCTTAAATAACTGTTGTATTTGCATATA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTTTCAAACTTGAGTTCCTTCTTAAATAACTGTTGTATTTGCATATA  650

seq1  TGTATTTATATATGTGTACATATATATGTGTGTGTGTGTGTGTGTATATA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTTATATATGTGTACATATATATGTGTGTGTGTGTGTGTGTATATA  700

seq1  TATAAAAACCAACAAGATTTTCAACAAAGAAAAAAACTAAATATTCTAGG  750
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TATAAAAACCAACATGATTTTCAACAAAGAAAAAAACTAAATATTCTAGG  750

seq1  GTTCATTTTGCTTAAATTATCTGTTCTTTAAGCAATTATGAAAAAGAAGC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCATTTTGCTTAAATTATCTGTTCTTTAAGCAATTATGAAAAAGAAGC  800

seq1  ATTGGTAAAGAAAAATACTGCACTAAACCATGTCTGGTGACAGATTTAAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGGTAAAGAAAAATACTGCACTAAACCATGTCTGGTGACAGATTTAAC  850

seq1  ATTACTCTCTTTTGGTAGCAAGCCACATGTAATTTTATGGTTTGTTTGTT  900
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  ATTACTCTCTTTTGGTAGC-AGCCACATGTAATTTTATGGTTTGTTTGTT  899

seq1  TGTTTATGTGCATATGTAT-ATGCCTTCATGACTGTGTACAAGTGGGCAT  949
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  TGTTTATGTGCATATGTATAATGCCTTCATGACTGTGTACAAGTGGGCAT  949

seq1  CAAATCCCAAGAAC-TGTAGTGAACTGTAGTGAGGTAGTGAG-ATGTCTA  997
      |||||||||||||| ||||||||||||||||||||||||||| |||||||
seq2  CAAATCCCAAGAACTTGTAGTGAACTGTAGTGAGGTAGTGAGAATGTCTA  999

seq1  AT-GTGGG-TGCTA-GGAGCTG-AACCTTTGGAAGAGCAGT-AAGTAT-C  1041
      || ||||| ||||| ||||| | ||||||||||||| || | ||| || |
seq2  ATGGTGGGTTGCTAGGGAGCAGTAACCTTTGGAAGAACATTAAAGAATAC  1049

seq1  CGTAACTG  1049
      ||||||||
seq2  CGTAACTG  1057


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