BAC Information

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BAC

Clone NameB6Ng01-333H10
Chromosome2 (Build37)
Map Location 162,288,010 - 162,289,144
singlet/doubletsinglet
Overlap genePtprt
Upstream geneLOC383770
Downstream geneLOC100043895, LOC100043896, LOC100043696, LOC497655, LOC668947, Sfrs6, L3mbtl, LOC241765, Sgk2, Ift52, Mybl2, 2410116G06Rik, LOC269389, Jph2, 3230401D17Rik, LOC100043708, Gdap1l1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333H10.bB6Ng01-333H10.g
ACCGA119261GA119262
length1,1271,185
definitionB6Ng01-333H10.b B6Ng01-333H10.g
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
gaattcagtattgtggatgctcctgtccatttacatgcatatgaacatgt
tatactcctgcaggtaaatcctacagatatagtagatcttcctagtcagc
tctagcccctgggactgagagctaagtggagttggctggttgaggtaaag
gaacaaaggaaaaactggggtccgtggaaactactgtgtagttgctgctg
tgccatgagaaatgctacctacattaagcagggcaaatggaaaattaggc
tgccagaagcaaaaccagaaatggaccatagacaggtcgtcaggtgtgac
aatggtggctgtcagcatccgctgcaaaaggtttgaaatcactatcctat
tctagaaggctatgggcagaggctctggccacctaccctgaaggatttac
tctccttgggagggaatgtgatgtgagtattccaagatctcaggaagagg
cctggacccagcaaacagctcctgagttgatgttcttagaggtatatgtc
cctgtgacagggggcttggcttgggaggggagcagatcacctgctcttat
ctgaactcccattgtagctatgaccttgggtagatgctcagcccccagga
ctaatgaggggattcaatagcatgatgatatagatggagtattcagaagc
ttaattctggagagcagagagacattcaggcaatacagggtcttccttct
ttgcctagctgcatggtcatttccccatctccgagttagcaagatccttg
tgggcaacagagaggcataaaggagacataaaatgatgtgcttagcaacc
atggggattaaacacccaacagtgtatgcaaaggacacaggacatgtgag
tttaaaataaacaagagcagaagaaacaaagcttgaggtgagagacacag
gagccaacccggagtctctccacaagcaaagcctagctgtgtacggactc
tgggtgcctgtgcgatctggacaggtcaccttatctcttcggggtgtgag
ggaggtgatgatatacctactttgtacgtcatagatattcggatctctca
tggtagggacaagtgttaataccaggacagttctcaagagcatggtggag
aaggtgggcaggatgacttgcgcctct
gaattctcacctgaggaataccgaatggcagagaagcacctgaaaaaatg
ttcaacatccttaatcatcagggaaatgcaaatcaaaacaaccctgagat
tccacctcacaccagtcagaatggctaagatcaaaaattcaggtgacagc
agatgctggcgtggatgtggagaaagaggaacactcctccattgttggtg
ggattgcaggcttgtacaaccactctggaaattagtctggcggttcctca
gaaaattggacatagtactaccggaggatccagcaatacctctcctgggc
atatatccagaagatgccccaactggtaagaaggacacatgctccactat
gttcatagcagccttatttataatagccagaagctggaaagaacccagat
gcccctcaacagaggagtggatacagaaaatgtggtacatctacacaatg
gagtactactcagctattaaaaagaatgaatttatgaaattcctagccaa
atggatggacctagagggcatcatcctgagtgaggtaacacattcacaaa
ggaactcacacaatatgtactcactgataagtggatattagcccaaaacc
taggatacccaagatataagatacaatttcctaaacacatgaaactcaag
aagaatgaagactgaagtgtggacactatgtccctccttagaagtgggaa
caaagcacccttggaaggagttacagagacaaagtttggagctgagatga
aaggatggtccatgtagagacttccatatccagggatccaccccataatc
agcatccaaacgctgacaccattgcatacactagcaagattttatcgata
ggacccagatgtagctgtctcttgtgagactatgccggggcctagcaaac
acagaagtggatgctcacagtcagctaatggatgggtcacacggccccca
atggaggagctagagaaagtagccaagagctaaagggatctgcaacccta
taggcgaacacatatgactatcagtacccagagctctgactctagctgca
tatgtaacaaagatgctagtcgccatcactgaagaaagtccattgacccg
caacttatatggctcagttacagggacgtccaggtcagggagtgctggat
aggaatgcgtttagtagtggatgagcactcatact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_162288010_162289144
seq2: B6Ng01-333H10.b_48_1174 (reverse)

seq1  AGAGCCGCAAGTCATCCTGCCCACCTCTCCCACACATGCCTCCTGAGAAA  50
      |||| |||||||||||||||||||||   |||| |||| ||| |||| ||
seq2  AGAGGCGCAAGTCATCCTGCCCACCTTCTCCAC-CATG-CTCTTGAG-AA  47

seq1  CTGTCCTGGGTTATTACCAC-TGTCCCTACCATGAAGAGATCCGAATATC  99
      |||||||||  ||||| ||| ||||||||||||| |||||||||||||| 
seq2  CTGTCCTGG--TATTAACACTTGTCCCTACCATG-AGAGATCCGAATAT-  93

seq1  CTATGACGTACAAAGTAGGTATAATCATCACCTCCCTCACACCCCGAAGA  149
      |||||||||||||||||||||| |||||||||||||||||||||||||||
seq2  CTATGACGTACAAAGTAGGTAT-ATCATCACCTCCCTCACACCCCGAAGA  142

seq1  GATAAGGTGACCTGTCCAAGATCGCACAGGCACCCAGAGTCCGTACACAG  199
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  GATAAGGTGACCTGTCC-AGATCGCACAGGCACCCAGAGTCCGTACACAG  191

seq1  CTAGGCTTTGCTTGTGGGGAGACTCCGGGTTGGCTCCTGTGTCTCTCACC  249
      ||||||||||||||||| ||||||||||||||||||||||||||||||||
seq2  CTAGGCTTTGCTTGTGGAGAGACTCCGGGTTGGCTCCTGTGTCTCTCACC  241

seq1  TCAAGCTTTGTTTCTTCTGCTCTTGTTTATTTTAAACTCACATGTCCTGT  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAGCTTTGTTTCTTCTGCTCTTGTTTATTTTAAACTCACATGTCCTGT  291

seq1  GTCCTTTGCATACACTGTTGGGTGTTTAATCCCCATGGTTGCTAAGCACA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTCCTTTGCATACACTGTTGGGTGTTTAATCCCCATGGTTGCTAAGCACA  341

seq1  TCATTTTATGTCTCCTTTATGCCTCTCTGTTGCCCACAAGGATCTTGCTA  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTTTATGTCTCCTTTATGCCTCTCTGTTGCCCACAAGGATCTTGCTA  391

seq1  ACTCGGAGATGGGGAAATGACCATGCAGCTAGGCAAAGAAGGAAGACCCT  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCGGAGATGGGGAAATGACCATGCAGCTAGGCAAAGAAGGAAGACCCT  441

seq1  GTATTGCCTGAATGTCTCTCTGCTCTCCAGAATTAAGCTTCTGAATACTC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATTGCCTGAATGTCTCTCTGCTCTCCAGAATTAAGCTTCTGAATACTC  491

seq1  CATCTATATCATCATGCTATTGAATCCCCTCATTAGTCCTGGGGGCTGAG  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTATATCATCATGCTATTGAATCCCCTCATTAGTCCTGGGGGCTGAG  541

seq1  CATCTACCCAAGGTCATAGCTACAATGGGAGTTCAGATAAGAGCAGGTGA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCTACCCAAGGTCATAGCTACAATGGGAGTTCAGATAAGAGCAGGTGA  591

seq1  TCTGCTCCCCTCCCAAGCCAAGCCCCCTGTCACAGGGACATATACCTCTA  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGCTCCCCTCCCAAGCCAAGCCCCCTGTCACAGGGACATATACCTCTA  641

seq1  AGAACATCAACTCAGGAGCTGTTTGCTGGGTCCAGGCCTCTTCCTGAGAT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACATCAACTCAGGAGCTGTTTGCTGGGTCCAGGCCTCTTCCTGAGAT  691

seq1  CTTGGAATACTCACATCACATTCCCTCCCAAGGAGAGTAAATCCTTCAGG  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGAATACTCACATCACATTCCCTCCCAAGGAGAGTAAATCCTTCAGG  741

seq1  GTAGGTGGCCAGAGCCTCTGCCCATAGCCTTCTAGAATAGGATAGTGATT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGGTGGCCAGAGCCTCTGCCCATAGCCTTCTAGAATAGGATAGTGATT  791

seq1  TCAAACCTTTTGCAGCGGATGCTGACAGCCACCATTGTCACACCTGACGA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAACCTTTTGCAGCGGATGCTGACAGCCACCATTGTCACACCTGACGA  841

seq1  CCTGTCTATGGTCCATTTCTGGTTTTGCTTCTGGCAGCCTAATTTTCCAT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTCTATGGTCCATTTCTGGTTTTGCTTCTGGCAGCCTAATTTTCCAT  891

seq1  TTGCCCTGCTTAATGTAGGTAGCATTTCTCATGGCACAGCAGCAACTACA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCTGCTTAATGTAGGTAGCATTTCTCATGGCACAGCAGCAACTACA  941

seq1  CAGTAGTTTCCACGGACCCCAGTTTTTCCTTTGTTCCTTTACCTCAACCA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGTTTCCACGGACCCCAGTTTTTCCTTTGTTCCTTTACCTCAACCA  991

seq1  GCCAACTCCACTTAGCTCTCAGTCCCAGGGGCTAGAGCTGACTAGGAAGA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAACTCCACTTAGCTCTCAGTCCCAGGGGCTAGAGCTGACTAGGAAGA  1041

seq1  TCTACTATATCTGTAGGATTTACCTGCAGGAGTATAACATGTTCATATGC  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTATATCTGTAGGATTTACCTGCAGGAGTATAACATGTTCATATGC  1091

seq1  ATGTAAATGGACAGGAGCATCCACAATACTGAATTC  1135
      ||||||||||||||||||||||||||||||||||||
seq2  ATGTAAATGGACAGGAGCATCCACAATACTGAATTC  1127