BAC Information

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BAC

Clone NameB6Ng01-333P16
Chromosome2 (Build37)
Map Location 121,314,925 - 121,428,177
singlet/doubletdoublet
Overlap geneWdr76p, Mfap1a, Wdr76, Frmd5
Upstream geneCapn3, Zfp106, Snap23, Lrrc57, Cep27, Stard9, Cdan1, Ttbk2, Ubr1, Tmem62, Rnu3b-ps2, Ccndbp1, Epb4.2, Tgm5, LOC640543, Lcmt2, Adal, Zscan29, D2Ertd435e, Trp53bp1, Mtap1a, Hisppd2a, Ckmt1, Strc, Catsper2, Pdia3, Ell3, Serf2, LOC574418, 2310003F16Rik, Mfap1b
Downstream geneCasc4, Mageb3, Ctdspl2, Eif3s1, 4930424G05Rik, B2m, Trim69, 4933406J08Rik, LOC433468, LOC670832, Sord, Duox2, Duoxa2, Duoxa1, Duox1, Shf, Slc28a2, Bambi-ps1, Rp23-357i14.1, Gatm
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-333P16.bB6Ng01-333P16.g
ACCGA119599GA119600
length1,169971
definitionB6Ng01-333P16.b B6Ng01-333P16.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(121,427,009 - 121,428,177)(121,314,925 - 121,315,925)
sequence
gaattcctagcagccataacttgtaaaactcaatcaatgaagaaatttat
gtgaccacatttcccagtgtcccttagctaatgaaaacgtaaatgagttg
ggagagactcaacttaaaagtaaaagcaatttgcagcttccaaagctaac
ttgacaatgcttgagcacaggcaattctctttaataaacttcattcggtt
gttgttttatgtcgagacagaggctcactccctgtagagccctgtcaggt
tttgaccttccttctccttccccagcctcccgactgccaggtttcaggtg
ggcaccaccacgtcccctttttaatctagttcctgactgccagccttaaa
gctgagaccctttttgcacagctcctcctcctcagaggtattgcttcctg
cacagagctttctttagtgtgaaaatgattgctagcccacagagttgaac
attatcattcagactcaggctcagtttcagtcctgtttgtcattctggga
aagggaaacttagaattctatttgttagatacaattcattacatgtgcgt
gtgcgtgtgcgtgtgtgtgtgtgtgtgtgtgtgtgtgttactggagatca
gacccagggccttataaatggtagataagcactcttccaccgagctacaa
gcccagcctttaatttactgcattaagaaaatatgagctggattggtgac
tcatccctttaatcccagccctcgggaagcagtggcacgaggagccccat
gagtttgaggccagtctagtcaacatagtaacgtctaggccagccaagac
tttatagtgagaccttactcttctctgtagaaatgtctaggcctctatta
cataaatatgatttctatgctttgataattagctacaatattagtaactt
caagaagaaaatgtattctagcaaacacctttttcaaagataggacttgc
caaaacagtgtgctctaaaaataagtcaatgatctaagaaatcttaattt
atttccttaataagtcgttactcaatgacccattcatcaaagtctttgtg
ctaatgctcacttaaacgtagcttctccacctgctctccaggctcctttg
ctgagaatgagaactgttcgcaatcctggaattttctgtcatttcctccc
tcgataatacggggtattc

gaattcactttgtagaccaggctgtgctcacactcagaaatccacctgcc
tctactccctagtgctgggattaaaggcgtgtgccccactgcccagctaa
actctgagttttaaaattatgttcaaaatagggtctgataggatctgaat
gttaagtcttcctccatattcttggctaattttgtaaggtttttctttct
tctttctttctttccttccttctttcctctttctttctttccttctttca
tctttctctctctttctttctttctttctttctttctttctttctttctt
tctttctttctttctttctttctttctttctttctttctttctttctttc
tttctttctttctttctttctttctgacagttctgtagaccaagccggct
atgaaatcacagagttctgcctgcctctgcttcccaagtgctgggaagca
tgccatgcccagctaaaagatttttttcttaacatttatttttttcaatt
aaaaacattttatatatgagtgttttttccttgtatgtatgtctgtgtac
tgtattccatacctggtgcccacagaagccagaagagggtgttggatctc
ctggaagtagtagaatgtcagacagttgtaagaggacatgtgggtactgg
gaattgacctggaagggctcttgctaatgagttatctctctaggctgttt
tatcttttatgtgagtgagtgactgtgcttgtgtgtgtatgtgtgcacat
gtgtatgtgtatgtatgtaaagcttgacaaagaattgagatccaggtctg
gacactcctcagctgttagagctcttactgttcttcagaggacttgagga
ctcgtctattccagcattcacatgcagctacacatctgtactgtgtctag
agatcatactctgctctctgtacagatcatcacatgcatgtaggtctaag
tctatcatcgagtcagcatgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_121427009_121428177
seq2: B6Ng01-333P16.b_48_1216 (reverse)

seq1  GAATACACCGTATTTACTGAGGAGGGGAATGACAGAAAAT--CAGGATTG  48
      |||||| ||||| |||  ||||  || |||||||||||||  ||||||| 
seq2  GAATACCCCGTA-TTATCGAGGGAGGAAATGACAGAAAATTCCAGGATT-  48

seq1  GCGAACAG-TCTCA-TCTCAGC-AAGGAGCCTGGGAGAGCAGGTTGAGAA  95
      |||||||| ||||| ||||||| ||||||||| ||||||||||| |||||
seq2  GCGAACAGTTCTCATTCTCAGCAAAGGAGCCT-GGAGAGCAGGTGGAGAA  97

seq1  GCTACGTTAAAGTGAGCATTAGCACAAAGACTTTGATGAATGGGTCATTG  145
      |||||||| |||||||||||||||||||||||||||||||||||||||||
seq2  GCTACGTTTAAGTGAGCATTAGCACAAAGACTTTGATGAATGGGTCATTG  147

seq1  AGTAACGACTTAATTAAGGAAAT-AATTAAGATTTCTTAGATCATTGACT  194
      ||||||||||| ||||||||||| ||||||||||||||||||||||||||
seq2  AGTAACGACTT-ATTAAGGAAATAAATTAAGATTTCTTAGATCATTGACT  196

seq1  TATTTTTAGAGCACACTGTTTTGGCAAGTCCTATCTTTGAAAAAGGTGTT  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTTTAGAGCACACTGTTTTGGCAAGTCCTATCTTTGAAAAAGGTGTT  246

seq1  TGCTAGAATACATTTTCTTCTTGAAGTTACTAATATTGTAGCTAATTATC  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTAGAATACATTTTCTTCTTGAAGTTACTAATATTGTAGCTAATTATC  296

seq1  AAAGCATAGAAATCATATTTTATGTAAATAGAGGCCTAGACATTTCTACA  344
      ||||||||||||||||| ||||||| ||||||||||||||||||||||||
seq2  AAAGCATAGAAATCATA-TTTATGT-AATAGAGGCCTAGACATTTCTACA  344

seq1  GAGAAGAGTAAGGTCTCACTATAAAGTCTTGGCTGGCCTAGACGTTACTA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAAGAGTAAGGTCTCACTATAAAGTCTTGGCTGGCCTAGACGTTACTA  394

seq1  TGTTGACTAGACTGGCCTCAAACTCATGGGGCTCCTCGTGCCACTGCTTC  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTGACTAGACTGGCCTCAAACTCATGGGGCTCCTCGTGCCACTGCTTC  444

seq1  CCGAGGGCTGGGATTAAAGGGATGAGTCACCAATCCAGCTCATATTTTCT  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCGAGGGCTGGGATTAAAGGGATGAGTCACCAATCCAGCTCATATTTTCT  494

seq1  TAATGCAGTAAATTAAAGGCTGGGCTTGTAGCTCGGTGGAAGAGTGCTTA  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGCAGTAAATTAAAGGCTGGGCTTGTAGCTCGGTGGAAGAGTGCTTA  544

seq1  TCTACCATTTATAAGGCCCTGGGTCTGATCTCCAGTAACACACACACACA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACCATTTATAAGGCCCTGGGTCTGATCTCCAGTAACACACACACACA  594

seq1  CACACACACACACACGCACACGCACACGCACATGTAATGAATTGTATCTA  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACACACACGCACACGCACACGCACATGTAATGAATTGTATCTA  644

seq1  ACAAATAGAATTCTAAGTTTCCCTTTCCCAGAATGACAAACAGGACTGAA  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATAGAATTCTAAGTTTCCCTTTCCCAGAATGACAAACAGGACTGAA  694

seq1  ACTGAGCCTGAGTCTGAATGATAATGTTCAACTCTGTGGGCTAGCAATCA  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCCTGAGTCTGAATGATAATGTTCAACTCTGTGGGCTAGCAATCA  744

seq1  TTTTCACACTAAAGAAAGCTCTGTGCAGGAAGCAATACCTCTGAGGAGGA  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCACACTAAAGAAAGCTCTGTGCAGGAAGCAATACCTCTGAGGAGGA  794

seq1  GGAGCTGTGCAAAAAGGGTCTCAGCTTTAAGGCTGGCAGTCAGGAACTAG  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAGCTGTGCAAAAAGGGTCTCAGCTTTAAGGCTGGCAGTCAGGAACTAG  844

seq1  ATTAAAAAGGGGACGTGGTGGTGCCCACCTGAAACCTGGCAGTCGGGAGG  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAAAAGGGGACGTGGTGGTGCCCACCTGAAACCTGGCAGTCGGGAGG  894

seq1  CTGGGGAAGGAGAAGGAAGGTCAAAACCTGACAGGGCTCTACAGGGAGTG  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGGAAGGAGAAGGAAGGTCAAAACCTGACAGGGCTCTACAGGGAGTG  944

seq1  AGCCTCTGTCTCGACATAAAACAACAACCGAATGAAGTTTATTAAAGAGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCCTCTGTCTCGACATAAAACAACAACCGAATGAAGTTTATTAAAGAGA  994

seq1  ATTGCCTGTGCTCAAGCATTGTCAAGTTAGCTTTGGAAGCTGCAAATTGC  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCCTGTGCTCAAGCATTGTCAAGTTAGCTTTGGAAGCTGCAAATTGC  1044

seq1  TTTTACTTTTAAGTTGAGTCTCTCCCAACTCATTTACGTTTTCATTAGCT  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTACTTTTAAGTTGAGTCTCTCCCAACTCATTTACGTTTTCATTAGCT  1094

seq1  AAGGGACACTGGGAAATGTGGTCACATAAATTTCTTCATTGATTGAGTTT  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGGACACTGGGAAATGTGGTCACATAAATTTCTTCATTGATTGAGTTT  1144

seq1  TACAAGTTATGGCTGCTAGGAATTC  1169
      |||||||||||||||||||||||||
seq2  TACAAGTTATGGCTGCTAGGAATTC  1169


seq1: chr2_121314925_121315925
seq2: B6Ng01-333P16.g_66_1036

seq1  GAATTCACTTTGTAGACCAGGCTGTGCTCACACTCAGAAATCCACCTGCC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTTTGTAGACCAGGCTGTGCTCACACTCAGAAATCCACCTGCC  50

seq1  TCTACTCCCTAGTGCTGGGATTAAAGGCGTGTGCCCCACTGCCCAGCTAA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTACTCCCTAGTGCTGGGATTAAAGGCGTGTGCCCCACTGCCCAGCTAA  100

seq1  ACTCTGAGTTTTAAAATTATGTTCAAAATAGGGTCTGATAGGATCTGAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTGAGTTTTAAAATTATGTTCAAAATAGGGTCTGATAGGATCTGAAT  150

seq1  GTTAAGTCTTCCTCCATATTCTTGGCTAATTTTGTAAGGTTTTTCTTTCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAAGTCTTCCTCCATATTCTTGGCTAATTTTGTAAGGTTTTTCTTTCT  200

seq1  TCTTTCTTTCTTTCCTTCCTTCTTTCCTCTTTCTTTCTTTCCTTCTTTCA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCCTTCCTTCTTTCCTCTTTCTTTCTTTCCTTCTTTCA  250

seq1  TCTTTCTCTC--------TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  292
      ||||||||||        ||||||||||||||||||||||||||||||||
seq2  TCTTTCTCTCTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTT  300

seq1  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  342
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTCTTTC  350

seq1  TTTCTTTCTTTCTTTCTTTCTTTCTGACAGTTCTGTAGACCAAGCCGGCT  392
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTCTTTCTTTCTTTCTTTCTGACAGTTCTGTAGACCAAGCCGGCT  400

seq1  ATGAAATCACAGAGTTCTGCCTGCCTCTGCTTCCCAAGTGCTGGGAAGCA  442
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAATCACAGAGTTCTGCCTGCCTCTGCTTCCCAAGTGCTGGGAAGCA  450

seq1  TGCCATGCCCAGCTAAAAGATTTTTTTCTTAACATTTATTTTTTTCAATT  492
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCATGCCCAGCTAAAAGATTTTTTTCTTAACATTTATTTTTTTCAATT  500

seq1  AAAAACATTTTATATATGAGTGTTTTTTCCTTGTATGTATGTCTGTGTAC  542
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAACATTTTATATATGAGTGTTTTTTCCTTGTATGTATGTCTGTGTAC  550

seq1  TGTATTCCATACCTGGTGCCCACAGAAGCCAGAAGAGGGTGTTGGATCTC  592
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTATTCCATACCTGGTGCCCACAGAAGCCAGAAGAGGGTGTTGGATCTC  600

seq1  CTGGAAGTAGTAGAATGTCAGACAGTTGTAAGAGGACATGTGGGTACTGG  642
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGAAGTAGTAGAATGTCAGACAGTTGTAAGAGGACATGTGGGTACTGG  650

seq1  GAATTGACCTGGAAGGGCTCTTGCTAATGAGTTATCTCTCTAGGCTGTTT  692
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTGACCTGGAAGGGCTCTTGCTAATGAGTTATCTCTCTAGGCTGTTT  700

seq1  TATCTTTTATGTGAGTGAGTGACTGTGCTTGTGTGTGTATGTGTGCACAT  742
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATCTTTTATGTGAGTGAGTGACTGTGCTTGTGTGTGTATGTGTGCACAT  750

seq1  GTGTATGTGTATGTATGTAAAGCTTGGCAAAAGAATTGAAGATCCAGGTC  792
      |||||||||||||||||||||||||| | ||||||||| |||||||||||
seq2  GTGTATGTGTATGTATGTAAAGCTTGAC-AAAGAATTG-AGATCCAGGTC  798

seq1  TGGACACTCCCTCAGCTGTTAGGAGCTCTTACTGTTCTTCCAGAGGACTT  842
      |||||||| |||||||||||| ||||||||||||||||| ||||||||||
seq2  TGGACACT-CCTCAGCTGTTA-GAGCTCTTACTGTTCTT-CAGAGGACTT  845

seq1  GAGGACTCCGGTTCTATTCCCAGCATTCACATGGCAGCTCACAACATCTG  892
      ||||||||    |||||| ||||||||||||| |||||| || |||||||
seq2  GAGGACTC---GTCTATT-CCAGCATTCACAT-GCAGCT-AC-ACATCTG  888

seq1  TAACTGTTGTTCTAGAGGATACAATACTTCTTGGCTTCCCCCTGTACCAG  942
      | |||||   |||||||   |  |||||      || | | ||||| |||
seq2  T-ACTGT--GTCTAGAG---ATCATACT------CTGCTCTCTGTA-CAG  925

seq1  ATACATCAACATGCATGTAGGCTCTTAAAAGTCTCTATCATCCCAGAGTT  992
      || |||| ||||||||||||| |||   |||  |||||||||   |||| 
seq2  AT-CATC-ACATGCATGTAGG-TCT---AAG--TCTATCATC---GAGT-  963

seq1  CCAGCATGC  1001
       ||||||||
seq2  -CAGCATGC  971


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