BAC Information

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BAC

Clone NameB6Ng01-335E09
Chromosome2 (Build37)
Map Location 164,858,188 - 165,007,235
singlet/doubletdoublet
Overlap geneNcoa5, Cd40, Cdh22
Upstream geneLOC381404, Tomm34, Stk4, Kcns1, Wfdc5, Wfdc12, Wfdc15a, Wfdc15b, Svs2, Svs3b, Svs4, Svs3a, Svs6, Svs5, Slpi, Matn4, Rbpjl, Sdc4, 2610042O14Rik, 1700126L10Rik, Dbndd2, Pigt, LOC670507, Wfdc2, OTTMUSG00000016288, Wfdc6a, Spinlw1, Wfdc8, Wfdc6b, Wfdc16, OTTMUSG00000001088, Wfdc10, LOC629761, Wfdc13, Spint4, OTTMUSG00000016293, Wfdc3, Dnttip1, Ube2c, Tnnc2, Snx21, Acot8, Zswim3, Zswim1, 1700020C07Rik, Neurl2, Ctsa, Pltp, F730014I05Rik, Zfp335, LOC629777, Mmp9, Slc12a5
Downstream geneSlc35c2, Elmo2, Gm1008, Zfp334, 4833422F24Rik, Slc13a3, 2810408M09Rik, Slc2a10, Eya2, Prkcbp1, LOC546780, Ncoa3, Sulf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-335E09.bB6Ng01-335E09.g
ACCGA120556GA120557
length4301,178
definitionB6Ng01-335E09.b B6Ng01-335E09.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(165,006,800 - 165,007,235)(164,858,188 - 164,859,385)
sequence
atcaaccaagaaccagacaggcagccactgaatctgttttgggggcctgg
gggctggagcagcagctggaagagctgtggggagcagcggtcttagaagg
tgaaggaagggactggagcgtggggagagtgagctatcaacagtccctat
tatgtctgctcctgcaaaggcacacagtaggtgtttaattagttattaca
aggttagtgagagtcgctgcctgccctcagacagagcctcatcccatgtt
ttctcttttgtcccacacaggttcccgatggctctggatgacccctagtc
ccagaaggactccaagatccttttgccttcgctgatcacaccgtctgggc
gcagggaccatggcacaagccctattcaggagcagctgccaggctgcctg
gtgactggacctggggcttcagcgaggggg
gaattcagttctcacagtgcaggaagcttttaaaggcactgccatctgca
ggccgcaggcatggaatgcctggaatagttatttacaataaagtttcaga
gcaaagcattgtttatttagcttggggcactggtagatgaggctccactt
gctgatgttcggaaatgggacttccaagtcaaatcaaatttcccttgctt
ctttgtacattattgctcctgagaagtttgggaccaatggatgatcttat
gtttagttctattctgtgctcaacctgaggtcagccccccaaaatacaga
cttcttgtcatacagcccttggtgctggggtatctggaatggtccaagtt
ggcttttctgaatttcctttcagaaaataaagtaaatctgctctcacact
ttttaaaaactgaatttatgatcagatagctaatgggacatgaaactgct
gatatctagaaaaataccttccatttagtcttgcaatgtggttgttttgc
tagcacattatacaaggagaagcagtctcctatgtttcggtagagactaa
tgcatgtctaggggctcaaaaaatatatgaaagaggaaagacgagctaaa
tggaagagacaaaccaaaaggaaggcaggcatgcacgctaaccatcagtc
aagtggtctccaatccccacaaggcaaaactagagccttgttccaaaatg
ttgatacaaagttgctttttcacactcagacagatacaagtttaagtgtt
ctgtggtcaaaagccacatcagggtttgcagaagcatccttttcatgaac
tttcaaggtggctaccacaccacaatactgtaagaaagcgaggaaacaca
cccagtacatctgagggatgggttcttgcagctcctgagattagcgcttc
taaaggacaaccttttacaatgagaaagctcagatatttatcatcaccct
gaagatcccgggacaccccgggacattgcatgggagctggaatgccgcag
ggggaaaaatccatatacagtgaagacataacatgacattaccccgtact
ccagggcagcgttcccaaagcctggagcgcacaacttcaggagaacagga
cacattgttattatagacacggtatttatttttatgaagcgttagaaata
ctggctttcatataccgattggtttcaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_165006800_165007235
seq2: B6Ng01-335E09.b_46_481 (reverse)

seq1  CCCCCTCGCTGAAGCCCCAGGTCCAGTCACCAGGCAGCCTGGCAGCTGCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCCCTCGCTGAAGCCCCAGGTCCAGTCACCAGGCAGCCTGGCAGCTGCT  50

seq1  CCTGAATAGGGCTTGTGCCATGGTCCCTGCGCCCAGACGGTGTGATCAGC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATAGGGCTTGTGCCATGGTCCCTGCGCCCAGACGGTGTGATCAGC  100

seq1  GAAGGCAAAAGGATCTTGGAGTCCTTCTGGGACTAGGGGTCATCCAGAGC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAAAAGGATCTTGGAGTCCTTCTGGGACTAGGGGTCATCCAGAGC  150

seq1  CATCGGGAACCTGTGTGGGACAAAAGAGAAAACATGGGATGAGGCTCTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATCGGGAACCTGTGTGGGACAAAAGAGAAAACATGGGATGAGGCTCTGT  200

seq1  CTGAGGGCAGGCAGCGACTCTCACTAACCTTGTAATAACTAATTAAACAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAGGGCAGGCAGCGACTCTCACTAACCTTGTAATAACTAATTAAACAC  250

seq1  CTACTGTGTGCCTTTGCAGGAGCAGACATAATAGGGACTGTTGATAGCTC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTACTGTGTGCCTTTGCAGGAGCAGACATAATAGGGACTGTTGATAGCTC  300

seq1  ACTCTCCCCACGCTCCAGTCCCTTCCTTCACCTTCTAAGACCGCTGCTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTCTCCCCACGCTCCAGTCCCTTCCTTCACCTTCTAAGACCGCTGCTCC  350

seq1  CCACAGCTCTTCCAGCTGCTGCTCCAGCCCCCAGGCCCCCAAAACAGATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACAGCTCTTCCAGCTGCTGCTCCAGCCCCCAGGCCCCCAAAACAGATT  400

seq1  CAGTGGCTGCCTGTCTGGTTCTTGGTTGATGAATTC  436
      ||||||||||||||||||||||||||||||||||||
seq2  CAGTGGCTGCCTGTCTGGTTCTTGGTTGATGAATTC  436

seq1: chr2_164858188_164859385
seq2: B6Ng01-335E09.g_69_1246

seq1  GAATTCAGTTCTCACAGTGCAGGAAGCTTTTAAAGGCACTGCCATCTGCA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGTTCTCACAGTGCAGGAAGCTTTTAAAGGCACTGCCATCTGCA  50

seq1  GGCCGCAGGCATGGAATGCCTGGAATAGTTATTTACAATAAAGTTTCAGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCCGCAGGCATGGAATGCCTGGAATAGTTATTTACAATAAAGTTTCAGA  100

seq1  GCAAAGCATTGTTTATTTAGCTTGGGGCACTGGTAGATGAGGCTCCACTT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAAAGCATTGTTTATTTAGCTTGGGGCACTGGTAGATGAGGCTCCACTT  150

seq1  GCTGATGTTCGGAAATGGGACTTCCAAGTCAAATCAAATTTCCCTTGCTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGATGTTCGGAAATGGGACTTCCAAGTCAAATCAAATTTCCCTTGCTT  200

seq1  CTTTGTACATTATTGCTCCTGAGAAGTTTGGGACCAATGGATGATCTTAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTGTACATTATTGCTCCTGAGAAGTTTGGGACCAATGGATGATCTTAT  250

seq1  GTTTAGTTCTATTCTGTGCTCAACCTGAGGTCAGCCCCCCAAAATACAGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTAGTTCTATTCTGTGCTCAACCTGAGGTCAGCCCCCCAAAATACAGA  300

seq1  CTTCTTGTCATACAGCCCTTGGTGCTGGGGTATCTGGAATGGTCCAAGTT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTTGTCATACAGCCCTTGGTGCTGGGGTATCTGGAATGGTCCAAGTT  350

seq1  GGCTTTTCTGAATTTCCTTTCAGAAAATAAAGTAAATCTGCTCTCACACT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTTCTGAATTTCCTTTCAGAAAATAAAGTAAATCTGCTCTCACACT  400

seq1  TTTTAAAAACTGAATTTATGATCAGATAGCTAATGGGACATGAAACTGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAAAACTGAATTTATGATCAGATAGCTAATGGGACATGAAACTGCT  450

seq1  GATATCTAGAAAAATACCTTCCATTTAGTCTTGCAATGTGGTTGTTTTGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATATCTAGAAAAATACCTTCCATTTAGTCTTGCAATGTGGTTGTTTTGC  500

seq1  TAGCACATTATACAAGGAGAAGCAGTCTCCTATGTTTCGGTAGAGACTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCACATTATACAAGGAGAAGCAGTCTCCTATGTTTCGGTAGAGACTAA  550

seq1  TGCATGTCTAGGGGCTCAAAAAATATATGAAAGAGGAAAGACGAGCTAAA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTCTAGGGGCTCAAAAAATATATGAAAGAGGAAAGACGAGCTAAA  600

seq1  TGGAAGAGACAAACCAAAAGGAAGGCAGGCATGCACGCTAACCATCAGTC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAAGAGACAAACCAAAAGGAAGGCAGGCATGCACGCTAACCATCAGTC  650

seq1  AAGTGGTCTCCAATCCCCACAAGGCAAAACTAGAGCCTTGTTCCAAAATG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTGGTCTCCAATCCCCACAAGGCAAAACTAGAGCCTTGTTCCAAAATG  700

seq1  TTGATACAAAGTTGCTTTTTCACACTCAGACAGATACAAGTTTAAGTGTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGATACAAAGTTGCTTTTTCACACTCAGACAGATACAAGTTTAAGTGTT  750

seq1  CTGTGGTCAAAAGCCACATCAGGGTTTGCAGAAGCATCC-TTTCATGAAC  799
      ||||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  CTGTGGTCAAAAGCCACATCAGGGTTTGCAGAAGCATCCTTTTCATGAAC  800

seq1  TTTCAAGGTGGCTACCACACCACAATACTGTAAGAAAGCGAGGAAACACA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGGTGGCTACCACACCACAATACTGTAAGAAAGCGAGGAAACACA  850

seq1  CCCAGTACATCTGAGGGAT-GGTTCTTGCAGCTCCTGAGATTAGCGCTTC  898
      ||||||||||||||||||| ||||||||||||||||||||||||||||||
seq2  CCCAGTACATCTGAGGGATGGGTTCTTGCAGCTCCTGAGATTAGCGCTTC  900

seq1  TAAAGGACAACCTTTTACAATGAGAAAGCTCAGAATATTTATCATCACCC  948
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  TAAAGGACAACCTTTTACAATGAGAAAGCTCAG-ATATTTATCATCACCC  949

seq1  TGAAGATCCCGGGACACCCCGGGACATTGCAATGGGAGCTGGAATGCCGC  998
      |||||||||||||||||||||||||||||| |||||||||||||||||||
seq2  TGAAGATCCCGGGACACCCCGGGACATTGC-ATGGGAGCTGGAATGCCGC  998

seq1  AGGGGGAAAAATTCCATATACAGTGAAAGACATAACATGACAATTAACCC  1048
      ||||||||||| ||||||||||||| ||||||||||||||||  | ||||
seq2  AGGGGGAAAAA-TCCATATACAGTG-AAGACATAACATGACA--TTACCC  1044

seq1  CGTACTCCAAGGGCAGCGGTTCCCAAAGCCTGGAGCGCACAACTTCAGGA  1098
      |||||||| |||||||| ||||||||||||||||||||||||||||||||
seq2  CGTACTCC-AGGGCAGC-GTTCCCAAAGCCTGGAGCGCACAACTTCAGGA  1092

seq1  GGAACAAGGACACAAGTGTTTATTTTAATAGACA-GGTATTTATTTTTTT  1147
       |||| ||||||||     || || | ||||||| ||||||||||||| |
seq2  -GAAC-AGGACACA-----TTGTTATTATAGACACGGTATTTATTTTTAT  1135

seq1  TATGAGCGTTAGAGAAATAACTGGCTTTCCATTATACCGTTTGGGGTTCA  1197
       |  ||||||  |||||| ||||||||||   ||||||| || || ||||
seq2  GA--AGCGTT--AGAAAT-ACTGGCTTTC--ATATACCGATT-GGTTTCA  1177

seq1  A  1198
      |
seq2  A  1178