BAC Information

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BAC

Clone NameB6Ng01-336B14
Chromosome2 (Build37)
Map Location 40,487,685 - 40,632,712
singlet/doubletdoublet
Overlap geneLrp1b
Upstream geneLOC100042604, Magmas-ps, LOC666531
Downstream geneLOC100042629
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336B14.bB6Ng01-336B14.g
ACCGA121133GA121134
length1,1371,155
definitionB6Ng01-336B14.b B6Ng01-336B14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(40,487,685 - 40,488,819)(40,631,557 - 40,632,712)
sequence
gaattcttaggacagttactattgaagagatcctctctgaactgttcatg
tggagttatacgtttctcctcaataatatttacatctatctccaagagga
agaacaatatatagtgataataagtattaatggtcattttcataattgaa
gcctgtagattgttgataggataaacactagaatttcaaatgtacatgat
tatttgaatttttatacaaaagtgaacatagaactttatttttgtaattt
aggtttagaatttcttttcacctacaaaacatcctgacatgaatccaagt
ttcactgtaatcctaagatgaaagtcattagaaattccatcgcagacttc
aaaatagtgaatatattccacttttctctactcaagtgtcatatagacca
ctgattaaaatattattaccagacatctagtcatgaagttagaatgggta
tctattgttacaattgttttctattctaatctatcccttcatctgtattt
ccagaaaaatcatttgaaatataggaattctatgaatagatggaaatagt
ctcttccagttataaatatttggtgtgtgtgttcataaattttgatttcc
ctttattgggtagtttaggggatgggtcttacatctggttctctcttcct
tatacaaatttattcatatgatggaagctcgctggatgattttatgtttt
ctgggtaaacagtgcctgtgacttagttcattaccctcgttctcagcgta
agtggaagagactaatcaaaaactttatgtagcctgttctgatgaggatc
atagaaaaatgaggagagcaacctactgcagtgtaattttttttcaagat
atatgaaggtatgctcatgaagcctctaaataatgagggagacagtgtcc
ctattagcaatctttttatcaccaaacaaagcttccaaaaatgatactag
gttatatgcatttgagtggtggcccaagggcatcccatagaagtcttcaa
atatgtaggctgtgtccaagcatagattgccttccacaaatgacagcact
tctaggattatgaaaataacacccaatttatttcatcaaacttggagagg
ctaaacctgtgcctagtagagaaaccttccacagctc

gaattctctagacatgacattctgcaagtgaatacagcagggtagggttg
actttttcatttgaatgtttcctagtggaatgtacagcattattgtttaa
atgatggttgtctgctggttgaatttaaaattggtgcctttggctgccca
gctttatgaaactcaggaccaactctgatgtctaaccaatatcttctaca
taagtgtagtgctgtgttgtaatagtcagcatcagacgttcttggtgatg
cattttctactggagaacctggattagagcagttcctaaggaattttatt
aaagcaaacattgttaaaaaatgggagagaagagaaaaaaacaatgtgac
tgtagctgaagtacataagaaattgagaaaatacaattttggcaatatcg
ctttaatatttgaaattccatttcttcctataggttctgtgttttgaaat
tatgtttaccttaaaacattggtactatccgactgagattttctttaatc
agtgtcacgtgaggttcctcttctaacttgtttgtgcaataaagtatgtc
tcagtatttacattatttataagtgcttgtgtgttaggttttaggtaaat
gattacatatatattacatatatgagtcaatcaaatatatactaagcgtt
tttaaagtagaatttatatttttttctgaaaataactctattatggaaga
ttttgctaaattagatagatggctggaactttccattgccatgtagtata
tttttatattggtttaatataattatctacatttgtatacatatcagaca
acatactgcatatatatacatctatatatatgcatctatatatactgcat
atatatatatatatttcaaattacgctagtgcattccttgaaagcagtga
agaagagggatcccctaaagcgtttgtggaaacaggattataaagcaaca
tggaaagccatccctacacagaatcgtaaatgaagaagggtttaaaattt
ttcctagagttacattttctttgatgattattttggagaggttctattga
ggacattttctagtagagaggagtataggcattttgtatctgtaagggac
ttaatgaatatgttcccttctgccttattgatgatgttctttccaacttc
catat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_40487685_40488819
seq2: B6Ng01-336B14.b_51_1186

seq1  GAATTCTTAGGACAGTTACTATTGAAGAGATCCTCTCTGAACTGTTCATG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTTAGGACAGTTACTATTGAAGAGATCCTCTCTGAACTGTTCATG  50

seq1  TGGAGTTATACGTTTCTCCTCAATAATATTTACATCTATCTCCAAGAGGA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGAGTTATACGTTTCTCCTCAATAATATTTACATCTATCTCCAAGAGGA  100

seq1  AGAACAATATATAGTGATAATAAGTATTAATGGTCATTTTCATAATTGAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACAATATATAGTGATAATAAGTATTAATGGTCATTTTCATAATTGAA  150

seq1  GCCTGTAGATTGTTGATAGGATAAACACTAGAATTTCAAATGTACATGAT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCTGTAGATTGTTGATAGGATAAACACTAGAATTTCAAATGTACATGAT  200

seq1  TATTTGAATTTTTATACAAAAGTGAACATAGAACTTTATTTTTGTAATTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTGAATTTTTATACAAAAGTGAACATAGAACTTTATTTTTGTAATTT  250

seq1  AGGTTTAGAATTTCTTTTCACCTACAAAACATCCTGACATGAATCCAAGT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTAGAATTTCTTTTCACCTACAAAACATCCTGACATGAATCCAAGT  300

seq1  TTCACTGTAATCCTAAGATGAAAGTCATTAGAAATTCCATCGCAGACTTC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCACTGTAATCCTAAGATGAAAGTCATTAGAAATTCCATCGCAGACTTC  350

seq1  AAAATAGTGAATATATTCCACTTTTCTCTACTCAAGTGTCATATAGACCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAATAGTGAATATATTCCACTTTTCTCTACTCAAGTGTCATATAGACCA  400

seq1  CTGATTAAAATATTATTACCAGACATCTAGTCATGAAGTTAGAATGGGTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGATTAAAATATTATTACCAGACATCTAGTCATGAAGTTAGAATGGGTA  450

seq1  TCTATTGTTACAATTGTTTTCTATTCTAATCTATCCCTTCATCTGTATTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTGTTACAATTGTTTTCTATTCTAATCTATCCCTTCATCTGTATTT  500

seq1  CCAGAAAAATCATTTGAAATATAGGAATTCTATGAATAGATGGAAATAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGAAAAATCATTTGAAATATAGGAATTCTATGAATAGATGGAAATAGT  550

seq1  CTCTTCCAGTTATAAATATTTGGTGTGTGTGTTCATAAATTTTGATTTCC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTTCCAGTTATAAATATTTGGTGTGTGTGTTCATAAATTTTGATTTCC  600

seq1  CTTTATTGGGTAGTTTAGGGGATGGGTCTTACATCTGGTTCTCTCTTCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTGGGTAGTTTAGGGGATGGGTCTTACATCTGGTTCTCTCTTCCT  650

seq1  TATACAAATTTATTCATATGATGGAAGCTCGCTGGATGATTTTATGTTTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATACAAATTTATTCATATGATGGAAGCTCGCTGGATGATTTTATGTTTT  700

seq1  CTGGGTAAACAGTGCCTGTGACTTAGTTCATTACCCTCGTTCTCAGCGTA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGTAAACAGTGCCTGTGACTTAGTTCATTACCCTCGTTCTCAGCGTA  750

seq1  AGTGGAAGAGACTAATCAAAAACTTTATGTAGCCTGTTCTGATGAGGATC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGGAAGAGACTAATCAAAAACTTTATGTAGCCTGTTCTGATGAGGATC  800

seq1  ATAGAAAAATGAGGAGAGCAACCTACTGCAGTGTAA-TTTTTTTCAAGAT  849
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  ATAGAAAAATGAGGAGAGCAACCTACTGCAGTGTAATTTTTTTTCAAGAT  850

seq1  ATATGAAGGTAATGCTCATGAAGCCTCTAAATAATGAGGGAGACAGTGTC  899
      |||||||||| |||||||||||||||||||||||||||||||||||||||
seq2  ATATGAAGGT-ATGCTCATGAAGCCTCTAAATAATGAGGGAGACAGTGTC  899

seq1  CCTATTAGCAATC-TTTTATCACCAAACAAAGCTTCCAAAAATGATACTA  948
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  CCTATTAGCAATCTTTTTATCACCAAACAAAGCTTCCAAAAATGATACTA  949

seq1  GGTTATATGCAATTGAGGTGGTGG-CCAAGGGCATCCCATAGAAGTCTTC  997
      ||||||||||| |||| ||||||| |||||||||||||||||||||||||
seq2  GGTTATATGCATTTGA-GTGGTGGCCCAAGGGCATCCCATAGAAGTCTTC  998

seq1  AAATATTGTAGGCTGTGTCCAAGGCAATAGATTGCCTTCCACAAATTGAC  1047
      ||||| |||||||||||||||||   ||||||||||||||||||| ||||
seq2  AAATA-TGTAGGCTGTGTCCAAG--CATAGATTGCCTTCCACAAA-TGAC  1044

seq1  AGCAACTCTA-GATTATTGAAAATAACACCC-ATTTATTTCATCAAACAT  1095
      ||||  |||| ||||| |||||||||||||| |||||||||||||||| |
seq2  AGCACTTCTAGGATTA-TGAAAATAACACCCAATTTATTTCATCAAACTT  1093

seq1  GGAGAGGTTAAACTGGTGCCTA-CATAGAAAC--TCCACAGCT  1135
      ||||||| |||||  |||||||  | ||||||  |||||||||
seq2  GGAGAGGCTAAACCTGTGCCTAGTAGAGAAACCTTCCACAGCT  1136


seq1: chr2_40631557_40632712
seq2: B6Ng01-336B14.g_71_1225 (reverse)

seq1  ATAT-GAAGTTGTGAAAGAACAAATTAAATCAATAAAGCAGGAGGGAAAC  49
      |||| ||||||| |||||||||      |||||||| |||| |||| |||
seq2  ATATGGAAGTTG-GAAAGAACA----TCATCAATAAGGCAGAAGGG-AAC  44

seq1  ATA-TCATTAAGTTCCCTACAGATAC-AAATGCTTATACT-CTCTCTACT  96
      ||| ||||||||| || ||||||||| |||||| |||||| |||||||||
seq2  ATATTCATTAAGTCCCTTACAGATACAAAATGCCTATACTCCTCTCTACT  94

seq1  AGAAATGTTCTTCAATAGAACTTCT-CAAAATAATCATCAAAGAAAATGT  145
      |||||   || |||||||||| ||| ||||||||||||||||||||||||
seq2  AGAAAATGTCCTCAATAGAACCTCTCCAAAATAATCATCAAAGAAAATGT  144

seq1  AACTCTA-GAAAATTTTTAAACCTTTCTTCATTTTACGATTCTGTGTAGG  194
      ||||||| ||||| ||||||||| ||||||| ||||||||||||||||||
seq2  AACTCTAGGAAAAATTTTAAACCCTTCTTCA-TTTACGATTCTGTGTAGG  193

seq1  GATGGCTTTCCATGTTGCTTTATAATTCTGTTTCCACAAACGCTTTAGGG  244
      |||||||||||||||||||||||||| |||||||||||||||||||||||
seq2  GATGGCTTTCCATGTTGCTTTATAATCCTGTTTCCACAAACGCTTTAGGG  243

seq1  GATCCCTCTTCTTCACTGCTTTCAAGGAATGCACTAGCGTAATTTGAAAT  294
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCCCTCTTCTTCACTGCTTTCAAGGAATGCACTAGCGTAATTTGAAAT  293

seq1  ATATATATATATATGCAGTATATATAGATGCATATATATAGATGTATATA  344
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATATATATATGCAGTATATATAGATGCATATATATAGATGTATATA  343

seq1  TATGCAGTATGTTGTCTGATATGTATACAAATGTAGATAATTATATTAAA  394
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGCAGTATGTTGTCTGATATGTATACAAATGTAGATAATTATATTAAA  393

seq1  CCAATATAAAAATATACTACATGGCAATGGAAAGTTCCAGCCATCTATCT  444
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAATATAAAAATATACTACATGGCAATGGAAAGTTCCAGCCATCTATCT  443

seq1  AATTTAGCAAAATCTTCCATAATAGAGTTATTTTCAGAAAAAAATATAAA  494
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTAGCAAAATCTTCCATAATAGAGTTATTTTCAGAAAAAAATATAAA  493

seq1  TTCTACTTTAAAAACGCTTAGTATATATTTGATTGACTCATATATGTAAT  544
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTACTTTAAAAACGCTTAGTATATATTTGATTGACTCATATATGTAAT  543

seq1  ATATATGTAATCATTTACCTAAAACCTAACACACAAGCACTTATAAATAA  594
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATATGTAATCATTTACCTAAAACCTAACACACAAGCACTTATAAATAA  593

seq1  TGTAAATACTGAGACATACTTTATTGCACAAACAAGTTAGAAGAGGAACC  644
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAAATACTGAGACATACTTTATTGCACAAACAAGTTAGAAGAGGAACC  643

seq1  TCACGTGACACTGATTAAAGAAAATCTCAGTCGGATAGTACCAATGTTTT  694
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACGTGACACTGATTAAAGAAAATCTCAGTCGGATAGTACCAATGTTTT  693

seq1  AAGGTAAACATAATTTCAAAACACAGAACCTATAGGAAGAAATGGAATTT  744
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAAACATAATTTCAAAACACAGAACCTATAGGAAGAAATGGAATTT  743

seq1  CAAATATTAAAGCGATATTGCCAAAATTGTATTTTCTCAATTTCTTATGT  794
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAATATTAAAGCGATATTGCCAAAATTGTATTTTCTCAATTTCTTATGT  793

seq1  ACTTCAGCTACAGTCACATTGTTTTTTTCTCTTCTCTCCCATTTTTTAAC  844
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCAGCTACAGTCACATTGTTTTTTTCTCTTCTCTCCCATTTTTTAAC  843

seq1  AATGTTTGCTTTAATAAAATTCCTTAGGAACTGCTCTAATCCAGGTTCTC  894
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTTTGCTTTAATAAAATTCCTTAGGAACTGCTCTAATCCAGGTTCTC  893

seq1  CAGTAGAAAATGCATCACCAAGAACGTCTGATGCTGACTATTACAACACA  944
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTAGAAAATGCATCACCAAGAACGTCTGATGCTGACTATTACAACACA  943

seq1  GCACTACACTTATGTAGAAGATATTGGTTAGACATCAGAGTTGGTCCTGA  994
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCACTACACTTATGTAGAAGATATTGGTTAGACATCAGAGTTGGTCCTGA  993

seq1  GTTTCATAAAGCTGGGCAGCCAAAGGCACCAATTTTAAATTCAACCAGCA  1044
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCATAAAGCTGGGCAGCCAAAGGCACCAATTTTAAATTCAACCAGCA  1043

seq1  GACAACCATCATTTAAACAATAATGCTGTACATTCCACTAGGAAACATTC  1094
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACCATCATTTAAACAATAATGCTGTACATTCCACTAGGAAACATTC  1093

seq1  AAATGAAAAAGTCAACCCTACCCTGCTGTATTCACTTGCAGAATGTCATG  1144
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGAAAAAGTCAACCCTACCCTGCTGTATTCACTTGCAGAATGTCATG  1143

seq1  TCTAGAGAATTC  1156
      ||||||||||||
seq2  TCTAGAGAATTC  1155


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