BAC Information

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BAC

Clone NameB6Ng01-336M17
Chromosome2 (Build37)
Map Location 36,876,611 - 37,004,037
singlet/doubletdoublet
Overlap geneOlfr360, Olfr361, Olfr362, Olfr364-ps1
Upstream geneNdufa8, 1700010A17Rik, Lhx6, Rbm18, LOC100042236, Mrrf, LOC100040493, Ptgs1, Olfr334-ps1, Olfr335, Olfr336-ps1, Olfr337-ps1, Olfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1
Downstream geneOlfr365, Olfr366, Olfr367, Olfr368, Pdcl, Rc3h2, Zbtb6, Zbtb26, Rabgap1, Gpr21, 6430510M02Rik, Strbp, LOC639491, Dennd1a
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336M17.bB6Ng01-336M17.g
ACCGA121611GA121612
length9971,141
definitionB6Ng01-336M17.b B6Ng01-336M17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(36,876,611 - 36,877,461)(37,002,885 - 37,004,037)
sequence
gaattcactctatagagtaggctgtcatgaaattcacagggataacctgc
atctgcctcctgagtgttggtattaaaggtgtgcaccatgaaaccaagct
taattttttaaatatgaagactgtggctttatttgttataatatttcgca
caggtccttgaacttgaaagtagagaaatggctcagtggaaagtcattgc
tttactagcatatgtattctttctcagaactcagacagagctaggtgtta
tgatacacatttttctccccagcacatttttccataccctcctaaactca
atgattttgctctatcttggcacttattatttttcattccaaaatctatt
tatagggtcaccatgggcacagagttgtctgagaaccccgaggtccccta
gaggactctccacgtgatcttaggaccacctgtcagtggaacacaacttc
tgttccaatccaatcacacaggacctgagacagcattagggaagcaggaa
acccagcctgacaagggtcacaagtcccttcaggtcggcaacagcactgg
gacacctggacgcagagtcagtggacactcccaaggtccctagaggacag
cttctgagacagaccccgttttgggctccagacatcggggcaccttccct
gccagagaagacctgtccgccctgcccatgagggctttgctggatcacat
ggggaacccatcttggttcccggatccctctgagactagtctgtgcaggt
gagagtgtggactacagaagctgacagcttctgtgacaggacaaagcaac
acaggttctgggacaggtcctgtttcagccttcatcttctgccaggaggg
aggttggaagtagagagatagtttcccaggtttgctgaaagaggctaaga
gaatcacaagaggaacaatctctaaacagagacactataacactaactcc
aaagattaccacatggcaaaggcaaacgtaagaatcttactaacaga

gaattctttttagtttgaacttttggaaatatgagactgaagtggacatt
tcttgtttctctggagactgttgtgtcctgtgattttttttttctggata
ctgtcgtatgaaaggatgttttgctaagaaaagacatgtggtgtgctgaa
aactgtcttgtgagagggcatatggtagtttgatatagctaatgcttgag
agggtgcatgatatttagaaagaatataaatgcaaccctacagacagtaa
gaggaggctcttgcattggcttgctttgcaacacttttccagattcacag
atatgtcagagcctttggtttcttctggatcaaaccactgctcctgattc
atgtttggtgctttccaattggactggactgctgaagattggaactgccc
caaataattacttttaaatagttccacaacccccttttctattgatcctt
cttttcccctacctctggtaggtgggctaaagggagatgtaagtgtttaa
gaacccttattaaagtaggtttagaaaaatgtaaactgagtctggtgaga
tgtctcagtggttaagagcactgactgctcttctagtggtcctgagttca
attcccagcaaccacatggtggctcacaactatctgtaatgggatccagt
gctgtcttctggtgtgtctgaagacaacaacagtgtactcaaatgaaaaa
aaaatcttgcttaaattaatttggccatgatgatttgatctttcctcctt
tcctctttggattaacatgcatgtggtataaataagaattaagcacaaac
ttgcttgtatcctgcctgatacactgatagacttatatgtgtagcttatt
aaggaagcttttgaagattcctgaatagctgacacccactgactacctca
ccatctggcaaatgtactatcatgttatcttcctctatacacatttgaaa
tgtgctgcccatttctttccttttgagtccttttttgggtccatgtcaat
atgtctttagatgatgtcactcatagatcaggaaatcattctcagtttcc
acttagatcacttaatttactctactacactgtcattaaaattcctatgt
tgtggacctgggacatgccttattgaggttgattaccaatc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_36876611_36877461
seq2: B6Ng01-336M17.b_45_894

seq1  GAATTCACTCTATAGAGTAGGCTGTCATGAAATTCACAGGGATAACCTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTATAGAGTAGGCTGTCATGAAATTCACAGGGATAACCTGC  50

seq1  ATCTGCCTCCTGAGTGTTGGTATTAAAGGTGTGCACCATGAAACCAAGCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCTGCCTCCTGAGTGTTGGTATTAAAGGTGTGCACCATGAAACCAAGCT  100

seq1  TAATTTTTTAAATATGAAGACTGTGGCTTTATTTGTTATAATATTTCGCA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATTTTTTAAATATGAAGACTGTGGCTTTATTTGTTATAATATTTCGCA  150

seq1  CAGGTCCTTGAACTTGAAAGTAGAGAAATGGCTCAGTGGAAAGTCATTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGGTCCTTGAACTTGAAAGTAGAGAAATGGCTCAGTGGAAAGTCATTGC  200

seq1  TTTACTAGCATATGTATTCTTTCTCAGAACTCAGACAGAGCTAGGTGTTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACTAGCATATGTATTCTTTCTCAGAACTCAGACAGAGCTAGGTGTTA  250

seq1  TGATACACATTTTTCTCCCCAGCACATTTTTCCATACCCTCCTAAACTCA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATACACATTTTTCTCCCCAGCACATTTTTCCATACCCTCCTAAACTCA  300

seq1  ATGATTTTGCTCTATCTTGGCACTTATTATTTTTCATTCCAAAATCTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGATTTTGCTCTATCTTGGCACTTATTATTTTTCATTCCAAAATCTATT  350

seq1  TATAGGGTCACCATGGGCACAGAGTTGTCTGAGAACCCCGAGGTCCCCTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAGGGTCACCATGGGCACAGAGTTGTCTGAGAACCCCGAGGTCCCCTA  400

seq1  GAGGACTCTCCACGTGATCTTAGGACCACCTGTCAGTGGAACACAACTTC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGACTCTCCACGTGATCTTAGGACCACCTGTCAGTGGAACACAACTTC  450

seq1  TGTTCCAATCCAATCACACAGGACCTGAGACAGCATTAGGGAAGCAGGAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCCAATCCAATCACACAGGACCTGAGACAGCATTAGGGAAGCAGGAA  500

seq1  ACCCAGCCTGACAAGGGTCACAAGTCCCTTCAGGTCGGCAACAGCACTGG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAGCCTGACAAGGGTCACAAGTCCCTTCAGGTCGGCAACAGCACTGG  550

seq1  GACACCTGGACGCAGAGTCAGTGGACACTCCCAAGGTCCCTAGAGGACAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACACCTGGACGCAGAGTCAGTGGACACTCCCAAGGTCCCTAGAGGACAG  600

seq1  CTTCTGAGACAGACCCCGTTTTGGGCTCCAGACATCGGGGCACCTTCCCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCTGAGACAGACCCCGTTTTGGGCTCCAGACATCGGGGCACCTTCCCT  650

seq1  GCCAGAGAAGACCTGTCCGCCCTGCCCATGAGGGCTTTGCTGGATCACAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCAGAGAAGACCTGTCCGCCCTGCCCATGAGGGCTTTGCTGGATCACAT  700

seq1  GGGGAACCCATCTTGGTTCCCGGATCCCTCTGAGACTAGTCTGTGCAGGT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGAACCCATCTTGGTTCCCGGATCCCTCTGAGACTAGTCTGTGCAGGT  750

seq1  GAGAGTGTGGACTACAGAAGCTGACAGCTTCTGTGACAGGACAAAGCAAC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGTGTGGACTACAGAAGCTGACAGCTTCTGTGACAGGACAAAGCAAC  800

seq1  ACAGGTTCTGGGACAGGTCCTGTTTCAGGCCTTCATCTTCTGCCAGGAGG  850
      ||||||||||||||||||||||||||| ||||||||||||||||||||||
seq2  ACAGGTTCTGGGACAGGTCCTGTTTCA-GCCTTCATCTTCTGCCAGGAGG  849

seq1  G  851
      |
seq2  G  850


seq1: chr2_37002885_37004037
seq2: B6Ng01-336M17.g_65_1205 (reverse)

seq1  GATTGGTAATTAAACCTTCAATAA-GCATGTCCAAGTTCTCAC-ACATAG  48
      |||||||||| ||  | ||||||| |||||||| || || ||| ||||||
seq2  GATTGGTAATCAA--CCTCAATAAGGCATGTCCCAGGTC-CACAACATAG  47

seq1  GAATTTTAAATTGACCAGTGTTAAGTAGAGTAAATTAAGTGATCTTAGTG  98
      |||||||||  ||| ||||||  |||||||||||||||||||||| ||||
seq2  GAATTTTAA--TGA-CAGTGT--AGTAGAGTAAATTAAGTGATCTAAGTG  92

seq1  GAAAATTGAGAATGATTTCCTGATCTTATGAGTTGACATCATTCTAAAGA  148
      | ||| ||||||||||||||||||| |||||| |||||||| ||||||||
seq2  G-AAACTGAGAATGATTTCCTGATC-TATGAG-TGACATCA-TCTAAAGA  138

seq1  CATATTGAACATGGACCCAAAAAAGGACTCAAAAGGAAAGAAATGGGCAG  198
      ||||||| ||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTG-ACATGGACCCAAAAAAGGACTCAAAAGGAAAGAAATGGGCAG  187

seq1  CACATTTCAAATGGTGTATAGAGGAAGATAACATGATAGTACATTTGCCA  248
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  CACATTTCAAAT-GTGTATAGAGGAAGATAACATGATAGTACATTTGCCA  236

seq1  GATGGTGAGGTAGTCAGTGGGTGTCAGCTATTCAGGAATCTTCAAAAGCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGGTGAGGTAGTCAGTGGGTGTCAGCTATTCAGGAATCTTCAAAAGCT  286

seq1  TCCTTAATAAGCTACACATATAAGTCTATCAGTGTATCAGGCAGGATACA  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTTAATAAGCTACACATATAAGTCTATCAGTGTATCAGGCAGGATACA  336

seq1  AGCAAGTTTGTGCTTAATTCTTATTTATACCACATGCATGTTAATCCAAA  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAGTTTGTGCTTAATTCTTATTTATACCACATGCATGTTAATCCAAA  386

seq1  GAGGAAAGGAGGAAAGATCAAATCATCATGGCCAAATTAATTTAAGCAAG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGGAAAGGAGGAAAGATCAAATCATCATGGCCAAATTAATTTAAGCAAG  436

seq1  ATTTTTTTTTCATTTGAGTACACTGTTGTTGTCTTCAGACACACCAGAAG  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTTTTTCATTTGAGTACACTGTTGTTGTCTTCAGACACACCAGAAG  486

seq1  ACAGCACTGGATCCCATTACAGATAGTTGTGAGCCACCATGTGGTTGCTG  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACTGGATCCCATTACAGATAGTTGTGAGCCACCATGTGGTTGCTG  536

seq1  GGAATTGAACTCAGGACCACTAGAAGAGCAGTCAGTGCTCTTAACCACTG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTGAACTCAGGACCACTAGAAGAGCAGTCAGTGCTCTTAACCACTG  586

seq1  AGACATCTCACCAGACTCAGTTTACATTTTTCTAAACCTACTTTAATAAG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGACATCTCACCAGACTCAGTTTACATTTTTCTAAACCTACTTTAATAAG  636

seq1  GGTTCTTAAACACTTACATCTCCCTTTAGCCCACCTACCAGAGGTAGGGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTCTTAAACACTTACATCTCCCTTTAGCCCACCTACCAGAGGTAGGGG  686

seq1  AAAAGAAGGATCAATAGAAAAGGGGGTTGTGGAACTATTTAAAAGTAATT  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAGAAGGATCAATAGAAAAGGGGGTTGTGGAACTATTTAAAAGTAATT  736

seq1  ATTTGGGGCAGTTCCAATCTTCAGCAGTCCAGTCCAATTGGAAAGCACCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTGGGGCAGTTCCAATCTTCAGCAGTCCAGTCCAATTGGAAAGCACCA  786

seq1  AACATGAATCAGGAGCAGTGGTTTGATCCAGAAGAAACCAAAGGCTCTGA  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATGAATCAGGAGCAGTGGTTTGATCCAGAAGAAACCAAAGGCTCTGA  836

seq1  CATATCTGTGAATCTGGAAAAGTGTTGCAAAGCAAGCCAATGCAAGAGCC  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATCTGTGAATCTGGAAAAGTGTTGCAAAGCAAGCCAATGCAAGAGCC  886

seq1  TCCTCTTACTGTCTGTAGGGTTGCATTTATATTCTTTCTAAATATCATGC  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCTTACTGTCTGTAGGGTTGCATTTATATTCTTTCTAAATATCATGC  936

seq1  ACCCTCTCAAGCATTAGCTATATCAAACTACCATATGCCCTCTCACAAGA  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCTCTCAAGCATTAGCTATATCAAACTACCATATGCCCTCTCACAAGA  986

seq1  CAGTTTTCAGCACACCACATGTCTTTTCTTAGCAAAACATCCTTTCATAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTTTTCAGCACACCACATGTCTTTTCTTAGCAAAACATCCTTTCATAC  1036

seq1  GACAGTATCCAGAAAAAAAAAATCACAGGACACAACAGTCTCCAGAGAAA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTATCCAGAAAAAAAAAATCACAGGACACAACAGTCTCCAGAGAAA  1086

seq1  CAAGAAATGTCCACTTCAGTCTCATATTTCCAAAAGTTCAAACTAAAAAG  1148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAATGTCCACTTCAGTCTCATATTTCCAAAAGTTCAAACTAAAAAG  1136

seq1  AATTC  1153
      |||||
seq2  AATTC  1141


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