BAC Information

Click to search

BAC

Clone NameB6Ng01-336P04
Chromosome2 (Build37)
Map Location 108,424,351 - 108,471,255
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100043078, LOC668790
Downstream geneLOC623003, LOC100043423, LOC623031, Mett5d1, Kif18a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-336P04.bB6Ng01-336P04.g
ACCGA121721GA121722
length1,2231,139
definitionB6Ng01-336P04.b B6Ng01-336P04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(108,470,035 - 108,471,255)(108,424,351 - 108,425,505)
sequence
gaattctctggtggaacttttggagtcacttaattatactttgataactc
ttgatacttccatttagaattctagtaattatcttgaacttagtatattt
caaacttatctcctgctttcttcacttgtaaccccattacattcacaata
agttacaattcagtcaataaaagacttcaaatctccatctgaccatcaaa
gaattaaaaattgacattgttcataggtactttttgttttactcttatag
ttctttaaaaaattcatccagaatattactttctgaaatagctccatctt
gttttaattattacattaccctgtgtatagattgctgcagtagagaccaa
agcattctctatgattttgttcttggttgatgttgtttcatctcatctga
aaatgtatgtcagatcttgtgacttcaaataaaaagtaactaatacctcc
tcatcttggtaaatcctcaagcttctagctaacaatcagcccagctgttt
aaagtactcaaaaatctgatgttaccttcagaaaatgaaccaccatcttt
tggggggctgttacagatattattgattgacaagaaaaaaaaagctcttt
tcttactttgtgtggctctattgtcatcaataaaacatttcagagtccta
tgttaatatcttttatttcttgcttgatagcattaatttctatttcctca
gtatgtcataagatgcatagaggagtatttttgttttgtttgctttttta
ccgcttcatcccaatgatgctttacagatttaacaaatgaattctgatct
aaatatattctattttccacttcaagttttcagctttcaaattcccattt
atttacttttcataaactatgaccatctttattttcttgtactttacctg
atatatcttttgttttcatgattatactgatttcaatttctttaatatct
gtatagggcaacataaaaacacttgaaatcatctataggtttgtttttct
atccactctttactttggggtttagtcaattgctttcacttttctgtaaa
tgagaacttattaattgatagatgaaactgtttagatcttcacaatgtta
agtccccacctccctcagcaggcagatttacaattgtctgttgagactta
ttttgtagtatttgtaggacagctcactttagaatttgttaggtgtgcat
attccaggtaatggtccctcaca

gaattctcaggtggcctgggaagtgcaaacctgggtagatcctacaccag
tagcagagcctcctcttattatctggggaatgtcactgaaccataatagt
gtttccctacaaactgtaattggagtaggtacttggaatttggggagtga
cagcctattaacagctctaacaataggaaaactgagtatgtctccagcct
tcattgaagcaggaagaaaatgaatactattgactactcttaaatgccaa
agaactttcttgaccttcagcttttattaactcatttttttttccttagg
tgtaggtattttttgaatgtagctatttaaaaaactttcaaaaaggaaaa
tttatatttaaactcacataaatgaatattttaaacctatgcctaattta
ttccagattattgttgttatggttttcccaatacatctgtttttgcaatt
acatattgaggtagggagtgaatttatagcattgatggagaaaggatcta
ttgcatgcatggtacacaattagcctctggtttagtagtagaattgccag
agagaaaaacaacatgaggctactgatagattatcctgcatctaatgagc
aggccttaggatatgtttggactcctcagtatcattggcagttcattcta
tttgagcagccatagataaaatgtagagaaactctgtgctctaatttggc
ttttaagtaaagtttccatgaattctcatctgtaaggcaaggcagattca
acaaatctcttaggacagcctctggtgtaggcaaacaatctggcaccaaa
tgcaaacacccccattcatcccacatttgtgtgctgagtcaaaatgctat
aggaatataaatttctgcccagctaactccagagtttcttgcatgttttc
agagatcctttagtgaggtgctgtcccaattttccctattctgtactaat
gggcagattgccttacaagtacaaatcattatcaaatagacctgggattt
gacagtgcctttcatcagcaatctcaaatgcactaggctggatgctaagg
caaagatcactgttcttaaaagcagtagctgtgccacagtagctctgaaa
gcaggtgcaaatgagccccagtcttctaactgaagaaaa
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_108470035_108471255
seq2: B6Ng01-336P04.b_50_1272 (reverse)

seq1  TGTGAGG--ACAATACCTGG-ATATGCACA-CTAACAAATTCT-AAGTGA  45
      |||||||   || ||||||| ||||||||| |||||||||||| ||||||
seq2  TGTGAGGGACCATTACCTGGAATATGCACACCTAACAAATTCTAAAGTGA  50

seq1  GCTTGTCCTAACAATAATTACAAATAAGTCTCAACAGGACAATGGT-AAT  94
      || |||||||  |||| |   ||||||||||||||| |||||| || |||
seq2  GC-TGTCCTACAAATACTACAAAATAAGTCTCAACA-GACAATTGTAAAT  98

seq1  CTGCCTGCCTGAGGGAGGTGGGGGACTTAAACATTGTGAAGATCTAAACA  144
      ||||||| ||||||||||| |||||||| |||||||||||||||||||||
seq2  CTGCCTG-CTGAGGGAGGT-GGGGACTT-AACATTGTGAAGATCTAAACA  145

seq1  GTTTCATCTATCAATTAATAGTTTCTCATTTACAGAAAAGTGAAAGCAAT  194
      ||||||||||||||||||||  ||||||||||||||||||||||||||||
seq2  GTTTCATCTATCAATTAATAAGTTCTCATTTACAGAAAAGTGAAAGCAAT  195

seq1  TGACTAAACCCCAAAGTAAAGAGTGGATAGAAAAACAAACCTATAGATGA  244
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAAACCCCAAAGTAAAGAGTGGATAGAAAAACAAACCTATAGATGA  245

seq1  TTTCAAGTG-TTTTATGTTGCCCTATACAGATATTAAAGAAATTGAAATC  293
      ||||||||| ||||||||||||||||||||||||||||||||||||||||
seq2  TTTCAAGTGTTTTTATGTTGCCCTATACAGATATTAAAGAAATTGAAATC  295

seq1  AGTATAATCATGAAAACAAAAGATATATCAGGTAAAGTACAAGAAAATAA  343
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATAATCATGAAAACAAAAGATATATCAGGTAAAGTACAAGAAAATAA  345

seq1  AGATGGTCATAGTTTATGAAAAGTAAATAAATGGGAATTTGAAAGCTGAA  393
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGGTCATAGTTTATGAAAAGTAAATAAATGGGAATTTGAAAGCTGAA  395

seq1  AACTTGAAGTGGAAAATAGAATATATTTAGATCAGAATTCATTTGTTAAA  443
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTTGAAGTGGAAAATAGAATATATTTAGATCAGAATTCATTTGTTAAA  445

seq1  TCTGTAAAGCATCATTGGGATGAAGCGGTAAAAAAGCAAACAAAACAAAA  493
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGTAAAGCATCATTGGGATGAAGCGGTAAAAAAGCAAACAAAACAAAA  495

seq1  ATACTCCTCTATGCATCTTATGACATACTGAGGAAATAGAAATTAATGCT  543
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACTCCTCTATGCATCTTATGACATACTGAGGAAATAGAAATTAATGCT  545

seq1  ATCAAGCAAGAAATAAAAGATATTAACATAGGACTCTGAAATGTTTTATT  593
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGCAAGAAATAAAAGATATTAACATAGGACTCTGAAATGTTTTATT  595

seq1  GATGACAATAGAGCCACACAAAGTAAGAAAAGAGCTTTTTTTTTCTTGTC  643
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATGACAATAGAGCCACACAAAGTAAGAAAAGAGCTTTTTTTTTCTTGTC  645

seq1  AATCAATAATATCTGTAACAGCCCCCCAAAAGATGGTGGTTCATTTTCTG  693
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCAATAATATCTGTAACAGCCCCCCAAAAGATGGTGGTTCATTTTCTG  695

seq1  AAGGTAACATCAGATTTTTGAGTACTTTAAACAGCTGGGCTGATTGTTAG  743
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGTAACATCAGATTTTTGAGTACTTTAAACAGCTGGGCTGATTGTTAG  745

seq1  CTAGAAGCTTGAGGATTTACCAAGATGAGGAGGTATTAGTTACTTTTTAT  793
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGAAGCTTGAGGATTTACCAAGATGAGGAGGTATTAGTTACTTTTTAT  795

seq1  TTGAAGTCACAAGATCTGACATACATTTTCAGATGAGATGAAACAACATC  843
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAGTCACAAGATCTGACATACATTTTCAGATGAGATGAAACAACATC  845

seq1  AACCAAGAACAAAATCATAGAGAATGCTTTGGTCTCTACTGCAGCAATCT  893
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCAAGAACAAAATCATAGAGAATGCTTTGGTCTCTACTGCAGCAATCT  895

seq1  ATACACAGGGTAATGTAATAATTAAAACAAGATGGAGCTATTTCAGAAAG  943
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACACAGGGTAATGTAATAATTAAAACAAGATGGAGCTATTTCAGAAAG  945

seq1  TAATATTCTGGATGAATTTTTTAAAGAACTATAAGAGTAAAACAAAAAGT  993
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATATTCTGGATGAATTTTTTAAAGAACTATAAGAGTAAAACAAAAAGT  995

seq1  ACCTATGAACAATGTCAATTTTTAATTCTTTGATGGTCAGATGGAGATTT  1043
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCTATGAACAATGTCAATTTTTAATTCTTTGATGGTCAGATGGAGATTT  1045

seq1  GAAGTCTTTTATTGACTGAATTGTAACTTATTGTGAATGTAATGGGGTTA  1093
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGTCTTTTATTGACTGAATTGTAACTTATTGTGAATGTAATGGGGTTA  1095

seq1  CAAGTGAAGAAAGCAGGAGATAAGTTTGAAATATACTAAGTTCAAGATAA  1143
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTGAAGAAAGCAGGAGATAAGTTTGAAATATACTAAGTTCAAGATAA  1145

seq1  TTACTAGAATTCTAAATGGAAGTATCAAGAGTTATCAAAGTATAATTAAG  1193
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTAGAATTCTAAATGGAAGTATCAAGAGTTATCAAAGTATAATTAAG  1195

seq1  TGACTCCAAAAGTTCCACCAGAGAATTC  1221
      ||||||||||||||||||||||||||||
seq2  TGACTCCAAAAGTTCCACCAGAGAATTC  1223


seq1: chr2_108424351_108425505
seq2: B6Ng01-336P04.g_68_1206

seq1  GAATTCTCAGGTGGCCTGGGAAGTGCAAACCTGGGTAGATCCTACACCAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCAGGTGGCCTGGGAAGTGCAAACCTGGGTAGATCCTACACCAG  50

seq1  TAGCAGAGCCTCCTCTTATTATCTGGGGAATGTCACTGAACCATAATAGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGCAGAGCCTCCTCTTATTATCTGGGGAATGTCACTGAACCATAATAGT  100

seq1  GTTTCCCTACAAACTGTAATTGGAGTAGGTACTTGGAATTTGGGGAGTGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCCCTACAAACTGTAATTGGAGTAGGTACTTGGAATTTGGGGAGTGA  150

seq1  CAGCCTATTAACAGCTCTAACAATAGGAAAACTGAGTATGTCTCCAGCCT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGCCTATTAACAGCTCTAACAATAGGAAAACTGAGTATGTCTCCAGCCT  200

seq1  TCATTGAAGCAGGAAGAAAATGAATACTATTGACTACTCTTAAATGCCAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTGAAGCAGGAAGAAAATGAATACTATTGACTACTCTTAAATGCCAA  250

seq1  AGAACTTTCTTGACCTTCAGCTTTTATTAACTCATTTTTTTTTCCTTAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAACTTTCTTGACCTTCAGCTTTTATTAACTCATTTTTTTTTCCTTAGG  300

seq1  TGTAGGTATTTTTTGAATGTAGCTATTTAAAAAACTTTCAAAAAGGAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAGGTATTTTTTGAATGTAGCTATTTAAAAAACTTTCAAAAAGGAAAA  350

seq1  TTTATATTTAAACTCACATAAATGAATATTTTAAACCTATGCCTAATTTA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTATATTTAAACTCACATAAATGAATATTTTAAACCTATGCCTAATTTA  400

seq1  TTCCAGATTATTGTTGTTATGGTTTTCCCAATACATCTGTTTTTGCAATT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCAGATTATTGTTGTTATGGTTTTCCCAATACATCTGTTTTTGCAATT  450

seq1  ACATATTGAGGTAGGGAGTGAATTTATAGCATTGATGGAGAAAGGATCTA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACATATTGAGGTAGGGAGTGAATTTATAGCATTGATGGAGAAAGGATCTA  500

seq1  TTGCATGCATGGTACACAATTAGCCTCTGGTTTAGTAGTAGAATTGCCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCATGCATGGTACACAATTAGCCTCTGGTTTAGTAGTAGAATTGCCAG  550

seq1  AGAGAAAAACAACATGAGGCTACTGATAGATTATCCTGCATCTAATGAGC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAAAAACAACATGAGGCTACTGATAGATTATCCTGCATCTAATGAGC  600

seq1  AGGCCTTAGGATATGTTTGGACTCCTCAGTATCATTGGCAGTTCATTCTA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTTAGGATATGTTTGGACTCCTCAGTATCATTGGCAGTTCATTCTA  650

seq1  TTTGAGCAGCCATAGATAAAATGTAGAGAAACTCTGTGCTCTAATTTGGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTGAGCAGCCATAGATAAAATGTAGAGAAACTCTGTGCTCTAATTTGGC  700

seq1  TTTTAAGTAAAGTTTCCATGAATTCTCATCTGTAAGGCAAGGCAGATTCA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTAAGTAAAGTTTCCATGAATTCTCATCTGTAAGGCAAGGCAGATTCA  750

seq1  ACAAATCTCTTAGGACAGCCTCTGGTGTAGGCAAACAATCTGGCACCAAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAATCTCTTAGGACAGCCTCTGGTGTAGGCAAACAATCTGGCACCAAA  800

seq1  TGCAAACACCCCCATTCATCCCACATTTGTGTGCTGAGTCAAAATGCTAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCAAACACCCCCATTCATCCCACATTTGTGTGCTGAGTCAAAATGCTAT  850

seq1  AGGAATATAAATTTCTGCCCAGCTAACTCCAGAGTTTCTTGCATGTTTTC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAATATAAATTTCTGCCCAGCTAACTCCAGAGTTTCTTGCATGTTTTC  900

seq1  AGAGATCCTTTAGTGAGGTGCTGTCCCAATTTTCCCTATTCTGTACTAAT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGATCCTTTAGTGAGGTGCTGTCCCAATTTTCCCTATTCTGTACTAAT  950

seq1  GGGCAGATTGCCTTACAAGTACAAATCATTATCAAAATAGACCTGGGATT  1000
      ||||||||||||||||||||||||||||||||| ||||||||||||||||
seq2  GGGCAGATTGCCTTACAAGTACAAATCATTATC-AAATAGACCTGGGATT  999

seq1  TGACAGTGCCTTTCATCAGCAATCTCAAATGCACTAGGCTGGATGCTAAG  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACAGTGCCTTTCATCAGCAATCTCAAATGCACTAGGCTGGATGCTAAG  1049

seq1  GCAAAAGAATCAACCTGTTC-TAAAAGCAGGTAAGCTGTGCCACAAGTTA  1099
      |||||   ||||  |||||| |||||||||   ||||||||||||   ||
seq2  GCAAA--GATCA--CTGTTCTTAAAAGCAG--TAGCTGTGCCACA--GTA  1091

seq1  GCTTCTGGAAAAGGCAAGTGCAAATGAGGCCCCACAGTCCTCTAAACTGA  1149
      || ||||   || ||| |||||||||||   || ||||| ||| ||||||
seq2  GC-TCTG---AAAGCAGGTGCAAATGAG---CCCCAGTCTTCT-AACTGA  1133

seq1  AGAAAA  1155
      ||||||
seq2  AGAAAA  1139


| Home | SequenceCutter | Blast | Download |