BAC Information

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BAC

Clone NameB6Ng01-337K17
Chromosome2 (Build37)
Map Location 96,242,470 - 96,297,703
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042843
Downstream geneLOC100043267
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-337K17.bB6Ng01-337K17.g
ACCGA122222GA122223
length1,1381,018
definitionB6Ng01-337K17.b B6Ng01-337K17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,296,545 - 96,297,703)(96,242,470 - 96,243,500)
sequence
gaattctgttcatgataatgtctatagttagtgttgagtgaaaaaatcac
accatatataagtcagtaccatccaagattgttgataaattttaaaacat
catgcatcctattggggaaaatcactcagaacgaatcacttaaccttgtt
aaagtttttttttttttgaatcctctttcaatgagtaaaggtaaaagaca
ataaatagaaagtcaacagtgggatattttaaatttatagaatgaatagt
tggtactcttgtgagcaaattgaaccaccaatcctattcaatgaaaatcc
tttttaaacataccccacctttaccagaagtatactgagtatcactggta
ttcattcaggaactctaatttctctgtttaagagaaattatgatcagata
agtgttttactaaatttgtacttattgatgtgccatgattgtgtctcagt
cattctcccacctgtaacattttttttacaaaataatatcaatcatgttt
cacttgtggggtggtcttttttcttataggtgctatatattgcatatgtg
ccttaaggaattgtcttatcatcttccctaaattttcaaaaatttctagg
tcttaattaaaaaactaaaagtctttttggaatgtatatgtggtgcttta
tatgataaaagtggttatggaatatagttctagtgcatttatttgtcaaa
tagagttgagtgcttttacatacctctttgttaagtcttgttactcatca
agaataataaaaaaaaaaagtcagcagtcagacaaagtgactcacgattg
ttatcccaactctcagtagacagaggctacccagactaaaagaatggctg
tgaggcctgtctgaaataaagaagctgccactataaaaaacacatacgaa
aataatacagagcaaaattcctgatatggtaagtattatacttgaggaaa
caactgtttaaagatttttcttctgccttattgcacagcaacataaagtt
tatttgctactgcacatgagtactcagcatggtcacacacatacagtaac
ccatgttccaaaaatgagtctatgcctatagcacaggaatgatgcactgg
gaatgattctattcaaattcaggaaaaaaagctacctc

gaattcagaggcgaaggaaaaaaatgggaaatggaaatgaaacaatttgc
attgcaaaacttctcctttctcatgatgtcttatgtgtttggttgccttg
tcttcctccttcccatgttcgttatttcttggtaaaatgttgcttctgcc
tttctttgattaaagtcatcctagacttttgcccctgactcaacctcttt
gcttactgcttttatttttaattgtttctcagtctcattttaatataaat
tgactcactgctaattaagtacatttttgtagatccaagagagtttcctg
ttaggcaattgtatgctccctccttgatgatccatttctgaagcactaat
gttcaattaaacattaacaaggaacctccatattaacccaggttaagttt
agtacaaaggggattagtgcatagttcgagagagtaactcttgctataca
ggttttgcttgactgttggtagagtactgtcaatttagagaaaagggggg
ctttctattacaataaagtacactagagctaattgcctttgacaatagca
tgttcagaggtctcagttggccacaacagcaataagatatatacaacgag
caaaggatttctgggtggctcttaacctgctactttaaaaaatgtgcatt
tgagcaggttggggtgtcacctgcacttaatcccaggactcaagacacag
aggcaggtgacctctgtgagttcaaggccagcctggcctaagtgatgatt
tccagggtggccaggaaatctcactgtatatagtgagactatgtgtccca
aaacaaaacacacacacagagatatagacacacacacacacacacacaca
cacacacacagagagagagagagagagacacagacgcacacttacacaca
tatgcacaaatcacaccagaataacaacatcacacaaagggaaaaacaaa
cttaaacaggaaaaagaaaaaatacatatttaaaatatttcctagtttca
cgtagtgaaattttttgc
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_96296545_96297703
seq2: B6Ng01-337K17.b_47_1184 (reverse)

seq1  GAGGTAGCTCTTTTTTTTTCCTGAAAATTTAGAATAGAAATCCATCCCAG  50
      ||||||||    |||||||||||||   || |||||| ||||  ||||||
seq2  GAGGTAGC----TTTTTTTCCTGAA---TTTGAATAG-AATCATTCCCAG  42

seq1  TGCACTCCAATATCCTGGTGCTAATAAGCATTAGACTCATTTTTTGAAAC  100
      |||| ||  || |||| ||||| ||| ||| |||||||| |||||| |||
seq2  TGCA-TC--AT-TCCT-GTGCT-ATAGGCA-TAGACTCA-TTTTTGGAAC  84

seq1  ATGGGGTTAACCTGTATGTGTGTGAACATGCCTGAGTACTCATGTGCAGT  150
      || ||||||  |||||||||||||| |||| |||||||||||||||||||
seq2  AT-GGGTTA--CTGTATGTGTGTGACCATG-CTGAGTACTCATGTGCAGT  130

seq1  AGCAAAATAAACTTTATGTTGCTGTGCAATAAGGCAG-AGAAAAATCTTT  199
      ||| ||||||||||||||||||||||||||||||||| ||||||||||||
seq2  AGC-AAATAAACTTTATGTTGCTGTGCAATAAGGCAGAAGAAAAATCTTT  179

seq1  AAAACAGTTGTTTCCTCAAGTATAATACTTACCATATCAGGAATTTTGCT  249
       |||||||||||||||||||||||||||||||||||||||||||||||||
seq2  -AAACAGTTGTTTCCTCAAGTATAATACTTACCATATCAGGAATTTTGCT  228

seq1  CTGTATTATTTTCGTATGTGTTTTTTATAGTGGCAGCTTCTTTATTTCAG  299
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTATTATTTTCGTATGTGTTTTTTATAGTGGCAGCTTCTTTATTTCAG  278

seq1  ACAGGCCTCACAGCCATTCTTTTAGTCTGGGTAGCCTCTGTCTACTGAGA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGGCCTCACAGCCATTCTTTTAGTCTGGGTAGCCTCTGTCTACTGAGA  328

seq1  GTTGGGATAACAATCGTGAGTCACTTTGTCTGACTGCTGACTTTTTTTTT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTGGGATAACAATCGTGAGTCACTTTGTCTGACTGCTGACTTTTTTTTT  378

seq1  TTATTATTCTTGATGAGTAACAAGACTTAACAAAGAGGTATGTAAAAGCA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTATTCTTGATGAGTAACAAGACTTAACAAAGAGGTATGTAAAAGCA  428

seq1  CTCAACTCTATTTGACAAATAAATGCACTAGAACTATATTCCATAACCAC  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCAACTCTATTTGACAAATAAATGCACTAGAACTATATTCCATAACCAC  478

seq1  TTTTATCATATAAAGCACCACATATACATTCCAAAAAGACTTTTAGTTTT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTATCATATAAAGCACCACATATACATTCCAAAAAGACTTTTAGTTTT  528

seq1  TTAATTAAGACCTAGAAATTTTTGAAAATTTAGGGAAGATGATAAGACAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAATTAAGACCTAGAAATTTTTGAAAATTTAGGGAAGATGATAAGACAA  578

seq1  TTCCTTAAGGCACATATGCAATATATAGCACCTATAAGAAAAAAGACCAC  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTAAGGCACATATGCAATATATAGCACCTATAAGAAAAAAGACCAC  628

seq1  CCCACAAGTGAAACATGATTGATATTATTTTGTAAAAAAAATGTTACAGG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCACAAGTGAAACATGATTGATATTATTTTGTAAAAAAAATGTTACAGG  678

seq1  TGGGAGAATGACTGAGACACAATCATGGCACATCAATAAGTACAAATTTA  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGGAGAATGACTGAGACACAATCATGGCACATCAATAAGTACAAATTTA  728

seq1  GTAAAACACTTATCTGATCATAATTTCTCTTAAACAGAGAAATTAGAGTT  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAAAACACTTATCTGATCATAATTTCTCTTAAACAGAGAAATTAGAGTT  778

seq1  CCTGAATGAATACCAGTGATACTCAGTATACTTCTGGTAAAGGTGGGGTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGAATGAATACCAGTGATACTCAGTATACTTCTGGTAAAGGTGGGGTA  828

seq1  TGTTTAAAAAGGATTTTCATTGAATAGGATTGGTGGTTCAATTTGCTCAC  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTTAAAAAGGATTTTCATTGAATAGGATTGGTGGTTCAATTTGCTCAC  878

seq1  AAGAGTACCAACTATTCATTCTATAAATTTAAAATATCCCACTGTTGACT  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGTACCAACTATTCATTCTATAAATTTAAAATATCCCACTGTTGACT  928

seq1  TTCTATTTATTGTCTTTTACCTTTACTCATTGAAAGAGGATTCAAAAAAA  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTTATTGTCTTTTACCTTTACTCATTGAAAGAGGATTCAAAAAAA  978

seq1  AAAAAACTTTAACAAGGTTAAGTGATTCGTTCTGAGTGATTTTCCCCAAT  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACTTTAACAAGGTTAAGTGATTCGTTCTGAGTGATTTTCCCCAAT  1028

seq1  AGGATGCATGATGTTTTAAAATTTATCAACAATCTTGGATGGTACTGACT  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGATGCATGATGTTTTAAAATTTATCAACAATCTTGGATGGTACTGACT  1078

seq1  TATATATGGTGTGATTTTTTCACTCAACACTAACTATAGACATTATCATG  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATATATGGTGTGATTTTTTCACTCAACACTAACTATAGACATTATCATG  1128

seq1  AACAGAATTC  1159
      ||||||||||
seq2  AACAGAATTC  1138


seq1: chr2_96242470_96243500
seq2: B6Ng01-337K17.g_65_1082

seq1  GAATTCAGAGGCGAAGGAAAAAAATGGGAAATGGAAATGAAACAATTTGC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGAGGCGAAGGAAAAAAATGGGAAATGGAAATGAAACAATTTGC  50

seq1  ATTGCAAAACTTCTCCTTTCTCATGATGTCTTATGTGTTTGGTTGCCTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGCAAAACTTCTCCTTTCTCATGATGTCTTATGTGTTTGGTTGCCTTG  100

seq1  TCTTCCTCCTTCCCATGTTCGTTATTTCTTGGTAAAATGTTGCTTCTGCC  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCCTCCTTCCCATGTTCGTTATTTCTTGGTAAAATGTTGCTTCTGCC  150

seq1  TTTCTTTGATTAAAGTCATCCTAGACTTTTGCCCCTGACTCAACCTCTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTTTGATTAAAGTCATCCTAGACTTTTGCCCCTGACTCAACCTCTTT  200

seq1  GCTTACTGCTTTTATTTTTAATTGTTTCTCAGTCTCATTTTAATATAAAT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTTACTGCTTTTATTTTTAATTGTTTCTCAGTCTCATTTTAATATAAAT  250

seq1  TGACTCACTGCTAATTAAGTACATTTTTGTAGATCCAAGAGAGTTTCCTG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTCACTGCTAATTAAGTACATTTTTGTAGATCCAAGAGAGTTTCCTG  300

seq1  TTAGGCAATTGTATGCTCCCTCCTTGATGATCCATTTCTGAAGCACTAAT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTAGGCAATTGTATGCTCCCTCCTTGATGATCCATTTCTGAAGCACTAAT  350

seq1  GTTCAATTAAACATTAACAAGGAACCTCCATATTAACCCAGGTTAAGTTT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTCAATTAAACATTAACAAGGAACCTCCATATTAACCCAGGTTAAGTTT  400

seq1  AGTACAAAGGGGATTAGTGCATAGTTCGAGAGAGTAACTCTTGCTATACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTACAAAGGGGATTAGTGCATAGTTCGAGAGAGTAACTCTTGCTATACA  450

seq1  GGTTTTGCTTGACTGTTGGTAGAGTACTGTCAATTTAGAGAAAAGGGGGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTGCTTGACTGTTGGTAGAGTACTGTCAATTTAGAGAAAAGGGGGG  500

seq1  CTTTCTATTACAATAAAGTACACTAGAGCTAATTGCCTTTGACAATAGCA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCTATTACAATAAAGTACACTAGAGCTAATTGCCTTTGACAATAGCA  550

seq1  TGTTCAGAGGTCTCAGTTGGCCACAACAGCAATAAGATATATACAACGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTTCAGAGGTCTCAGTTGGCCACAACAGCAATAAGATATATACAACGAG  600

seq1  CAAAGGATTTCTGGGTGGCTCTTAACCTGCTACTTTAAAAAATGTGCATT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGGATTTCTGGGTGGCTCTTAACCTGCTACTTTAAAAAATGTGCATT  650

seq1  TGAGCAGGTTGGGGTGTCACCTGCACTTAATCCCAGGACTCAAGACACAG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAGCAGGTTGGGGTGTCACCTGCACTTAATCCCAGGACTCAAGACACAG  700

seq1  AGGCAGGTGACCTCTGTGAGTTCAAGGCCAGCCTGGCCTAAGTGATGATT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCAGGTGACCTCTGTGAGTTCAAGGCCAGCCTGGCCTAAGTGATGATT  750

seq1  TCCAGGGTGGCCAGGAAATCTCACTGTATATAGTGAGACTATGTGTCCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCAGGGTGGCCAGGAAATCTCACTGTATATAGTGAGACTATGTGTCCCA  800

seq1  AAACAAAACACACACACAGAGATATAGACACACACACACACACACACACA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAACAAAACACACACACAGAGATATAGACACACACACACACACACACACA  850

seq1  CACACACACAGAGAGAGAGAGAGAGAGACACAGACGCACACTTACACACA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACACACAGAGAGAGAGAGAGAGAGACACAGACGCACACTTACACACA  900

seq1  TATGCACAAATCACACCAGAATAACAACATCAACAACAAAGGGAAAAAAC  950
      ||||||||||||||||||||||||||||||||   |||||||||||||  
seq2  TATGCACAAATCACACCAGAATAACAACATCA--CACAAAGGGAAAAA--  946

seq1  AAAACTTAAACAGGAAAAAGAAAAAAATACATATTTAAAAATATTTCCTA  1000
       ||||||||||||||||||| ||||||||||||||| |||||||||||| 
seq2  CAAACTTAAACAGGAAAAAG-AAAAAATACATATTT-AAAATATTTCCT-  993

seq1  AGTTTTCCACGGTAAGTGGAAAATTTTTTGC  1031
      |||||  ||||   ||||  |||||||||||
seq2  AGTTT--CACG--TAGTG--AAATTTTTTGC  1018


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