BAC Information

Click to search

BAC

Clone NameB6Ng01-339F23
Chromosome2 (Build37)
Map Location 173,429,719 - 173,582,664
singlet/doubletdoublet
Overlap geneLOC100043911, Rab22a, 1700010B08Rik, Vapb
Upstream geneLOC100043750, Bmp7, LOC100043751, Spo11, Rae1, Rbm38, Ctcfl, EG619800, Pck1, Zbp1, Tmepai, 1700021F07Rik, 1700030G11Rik
Downstream geneLOC620189, LOC664880, LOC100043912, LOC664901, Stx16, Npepl1, Nespas, Gnas, Th1l, Ctsz, Rpl30-ps5, Tubb1, Atp5e, Slmo2, LOC664967, LOC100043757
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339F23.bB6Ng01-339F23.g
ACCGA123384GA123385
length8011,079
definitionB6Ng01-339F23.b B6Ng01-339F23.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(173,581,864 - 173,582,664)(173,429,719 - 173,430,782)
sequence
gaattcaaggaagaatcagtaatgagctggacttcatcagaactcaaagc
ctatgggctgggcagggctctgaagaaggggtgcctaacactcaagaaac
cccagaaacccatccccagcactgaaaaaaatcaaataaataaaaataga
aacatctgccctgctgaggaatattgcccacaggacggagggacaagagc
cacagaccagaagggctggtgtgaaagatacacccaataacgggtcatct
gctgaacatatggagaactcctgaacaacagcaaggaaaatgccacctgg
tttaaaaacagacaaaagagcttcaggcatcgcactaaacaaggtgaaat
cacaacaaagtgtcaccacttcttctttgtgtggctaaagtccaacgctg
agcaccaaatgtggggcacacacaaggccaccagacttacattggtgctg
tggaacatggtctatgcagccactttgagggacagtcaagtattttttcc
ttttctttttgtgattctattcaaacttgaactgaggggctcgcacacgc
tagaccagcctctaactctgcgctgtaccctcagcccagctgggtgcatt
ctttctggcattctctcttcattcccacactgtaaatgaagggttaacag
cctcaccagaacgatgtccaccacagaggcaaaacaaagtccttcagaag
gagaatacaataaactatggaacatctagatgtagataatagtagtagta
atattaatattaataataataatattaataataatagaagaaggaggagg
a
gaattctccttgatgacaaaggtaaataaattagaaggatataaacactg
aacctgctacattaaacacagcagaaaaagacaatgttaaagagcaatgt
ttccgttttcaccatgttagagcaatccaagaaagctgagctctaggaag
tagagcggagggaaaggtaggaaggaaggctgcacctctcaggctgaact
gagaaccacagcgagaagcagcgagcagacaccactgaacctcacactgg
agatgaagtcagccagctttcttacatacccaacttacccaatgacacag
aagatcatacaaaaatgaagtccttatcttcttaccaaaaccatgccatg
tcaaaggaaactccagagccacagatctgactggagaagtaacaagaatg
taagagggcgaaggggccacagacttacacaaaacctctctgaagactgc
ttctcgaatcccagtgaggtgggaaagagcagtgggcgcggtggagaagc
aaggcactcgcctgactctcactacacctaaaccaacatcacagggtttg
gggcctgagcttcctgctgtgacagagccagagaatgtcatgtctaccac
agtcctgtcaaagaaacagaggctaacatgaggcctgaaggaaacactag
gcagtgccaagatggaagacattctaccaaggaactggcctacactgtgt
caagatctcccaggttacaagatctaaagattcagaaagtgtttaaggtc
aggacactggagacaggaggactcagggccaagagagacttcaacgctct
ttgtatttgcgtaatgtcaaatgatcttgtctccaagtcagtctcaaatg
ggctcatatgtgtgtgtatagacacacacacacatatgtgcaacatgtac
cacaccatgctttacacacatattgtatacatgcatgtgtgttgtgtgtg
tgaaccagagaagaaatgatgactctaaactaagtgacaggctcctagaa
aagggggaaggagaaacacagctctccattctttttaactctcctggaaa
gttcaatcaaaagctaccttcctgattgg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_173581864_173582664
seq2: B6Ng01-339F23.b_50_850 (reverse)

seq1  TCCTCCTCCTTCTTCTATTATTATTAATATTATTATTATTAATATTAATA  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTCCTCCTTCTTCTATTATTATTAATATTATTATTATTAATATTAATA  50

seq1  TTACTACTACTATTATCTACATCTAGATGTTCCATAGTTTATTGTATTCT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACTACTACTATTATCTACATCTAGATGTTCCATAGTTTATTGTATTCT  100

seq1  CCTTCTGAAGGACTTTGTTTTGCCTCTGTGGTGGACATCGTTCTGGTGAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTCTGAAGGACTTTGTTTTGCCTCTGTGGTGGACATCGTTCTGGTGAG  150

seq1  GCTGTTAACCCTTCATTTACAGTGTGGGAATGAAGAGAGAATGCCAGAAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTAACCCTTCATTTACAGTGTGGGAATGAAGAGAGAATGCCAGAAA  200

seq1  GAATGCACCCAGCTGGGCTGAGGGTACAGCGCAGAGTTAGAGGCTGGTCT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATGCACCCAGCTGGGCTGAGGGTACAGCGCAGAGTTAGAGGCTGGTCT  250

seq1  AGCGTGTGCGAGCCCCTCAGTTCAAGTTTGAATAGAATCACAAAAAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCGTGTGCGAGCCCCTCAGTTCAAGTTTGAATAGAATCACAAAAAGAAA  300

seq1  AGGAAAAAATACTTGACTGTCCCTCAAAGTGGCTGCATAGACCATGTTCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAAAATACTTGACTGTCCCTCAAAGTGGCTGCATAGACCATGTTCC  350

seq1  ACAGCACCAATGTAAGTCTGGTGGCCTTGTGTGTGCCCCACATTTGGTGC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGCACCAATGTAAGTCTGGTGGCCTTGTGTGTGCCCCACATTTGGTGC  400

seq1  TCAGCGTTGGACTTTAGCCACACAAAGAAGAAGTGGTGACACTTTGTTGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCGTTGGACTTTAGCCACACAAAGAAGAAGTGGTGACACTTTGTTGT  450

seq1  GATTTCACCTTGTTTAGTGCGATGCCTGAAGCTCTTTTGTCTGTTTTTAA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATTTCACCTTGTTTAGTGCGATGCCTGAAGCTCTTTTGTCTGTTTTTAA  500

seq1  ACCAGGTGGCATTTTCCTTGCTGTTGTTCAGGAGTTCTCCATATGTTCAG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGGTGGCATTTTCCTTGCTGTTGTTCAGGAGTTCTCCATATGTTCAG  550

seq1  CAGATGACCCGTTATTGGGTGTATCTTTCACACCAGCCCTTCTGGTCTGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGATGACCCGTTATTGGGTGTATCTTTCACACCAGCCCTTCTGGTCTGT  600

seq1  GGCTCTTGTCCCTCCGTCCTGTGGGCAATATTCCTCAGCAGGGCAGATGT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTTGTCCCTCCGTCCTGTGGGCAATATTCCTCAGCAGGGCAGATGT  650

seq1  TTCTATTTTTATTTATTTGATTTTTTTCAGTGCTGGGGATGGGTTTCTGG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTATTTTTATTTATTTGATTTTTTTCAGTGCTGGGGATGGGTTTCTGG  700

seq1  GGTTTCTTGAGTGTTAGGCACCCCTTCTTCAGAGCCCTGCCCAGCCCATA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTCTTGAGTGTTAGGCACCCCTTCTTCAGAGCCCTGCCCAGCCCATA  750

seq1  GGCTTTGAGTTCTGATGAAGTCCAGCTCATTACTGATTCTTCCTTGAATT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTTTGAGTTCTGATGAAGTCCAGCTCATTACTGATTCTTCCTTGAATT  800

seq1  C  801
      |
seq2  C  801

seq1: chr2_173429719_173430782
seq2: B6Ng01-339F23.g_68_1146

seq1  GAATTCTCCTTGATGACAAAGGTAAATAAATTAGAAGGATATAAACACTG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCTTGATGACAAAGGTAAATAAATTAGAAGGATATAAACACTG  50

seq1  AACCTGCTACATTAAACACAGCAGAAAAAGACAATGTTAAAGAGCAATGT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGCTACATTAAACACAGCAGAAAAAGACAATGTTAAAGAGCAATGT  100

seq1  TTCCGTTTTCACCATGTTAGAGCAATCCAAGAAAGCTGAGCTCTAGGAAG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCGTTTTCACCATGTTAGAGCAATCCAAGAAAGCTGAGCTCTAGGAAG  150

seq1  TAGAGCGGAGGGAAAGGTAGGAAGGAAGGCTGCACCTCTCAGGCTGAACT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAGCGGAGGGAAAGGTAGGAAGGAAGGCTGCACCTCTCAGGCTGAACT  200

seq1  GAGAACCACAGCGAGAAGCAGCGAGCAGACACCACTGAACCTCACACTGG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACCACAGCGAGAAGCAGCGAGCAGACACCACTGAACCTCACACTGG  250

seq1  AGATGAAGTCAGCCAGCTTTCTTACATACCCAACTTACCCAATGACACAG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATGAAGTCAGCCAGCTTTCTTACATACCCAACTTACCCAATGACACAG  300

seq1  AAGATCATACAAAAATGAAGTCCTTATCTTCTTACCAAAACCATGCCATG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATCATACAAAAATGAAGTCCTTATCTTCTTACCAAAACCATGCCATG  350

seq1  TCAAAGGAAACTCCAGAGCCACAGATCTGACTGGAGAAGTAACAAGAATG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAAAGGAAACTCCAGAGCCACAGATCTGACTGGAGAAGTAACAAGAATG  400

seq1  TAAGAGGGCGAAGGGGCCACAGACTTACACAAAACCTCTCTGAAGACTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGGGCGAAGGGGCCACAGACTTACACAAAACCTCTCTGAAGACTGC  450

seq1  TTCTCGAATCCCAGTGAGGTGGGAAAGAGCAGTGGGCGCGGTGGAGAAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCGAATCCCAGTGAGGTGGGAAAGAGCAGTGGGCGCGGTGGAGAAGC  500

seq1  AAGGCACTCGCCTGACTCTCACTACACCTAAACCAACATCACAGGGTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGGCACTCGCCTGACTCTCACTACACCTAAACCAACATCACAGGGTTTG  550

seq1  GGGCCTGAGCTTCCTGCTGTGACAGAGCCAGAGAATGTCATGTCTACCAC  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTGAGCTTCCTGCTGTGACAGAGCCAGAGAATGTCATGTCTACCAC  600

seq1  AGTCCTGTCAAAGAAACAGAGGCTAACATGAGGCCTGAAGGAAACACTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTCCTGTCAAAGAAACAGAGGCTAACATGAGGCCTGAAGGAAACACTAG  650

seq1  GCAGTGCCAAGATGGAAGACATTCTACCAAGGAACTGGCCTACACTGTGT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGTGCCAAGATGGAAGACATTCTACCAAGGAACTGGCCTACACTGTGT  700

seq1  CAAGACCTCCCAGGTTACAAGATCTAAAGATTCAGAAAGTGTTTAAGGTC  750
      ||||| ||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGATCTCCCAGGTTACAAGATCTAAAGATTCAGAAAGTGTTTAAGGTC  750

seq1  AGGACACTGGAGACAGGAGGACTCAGGGCCAAGAGAGACTTCAACGCTC-  799
      ||||||||||||||||||||||||||||||||||||||||||||||||| 
seq2  AGGACACTGGAGACAGGAGGACTCAGGGCCAAGAGAGACTTCAACGCTCT  800

seq1  TTGTA-TTGCGTAATGTCAAATGATCTTGTCTCCAAGTCAGTCTCAAAT-  847
      ||||| ||||||||||||||||||||||||||||||||||||||||||| 
seq2  TTGTATTTGCGTAATGTCAAATGATCTTGTCTCCAAGTCAGTCTCAAATG  850

seq1  GGCTCATATGTGTGTGTATAGACACACACACACATATGTGC-ACATGTA-  895
      ||||||||||||||||||||||||||||||||||||||||| ||||||| 
seq2  GGCTCATATGTGTGTGTATAGACACACACACACATATGTGCAACATGTAC  900

seq1  CACA-CATGCTTTACACACATA-TGTATACATGCATGTGTG-TGTGTGTG  942
      |||| ||||||||||||||||| |||||||||||||||||| ||||||||
seq2  CACACCATGCTTTACACACATATTGTATACATGCATGTGTGTTGTGTGTG  950

seq1  TGAA-CAGAGAAGAAAGGATGACACAAACCAAAGTGACAGGCTCCTAGAG  991
      |||| ||||||||||| |||||| | || | |||||||||||||||||| 
seq2  TGAACCAGAGAAGAAATGATGACTCTAAACTAAGTGACAGGCTCCTAGAA  1000

seq1  AAGGGGGAGGGAG-AACACAGCT-TCCATTC-TTCTAACTCTCCT-GTAA  1037
      |||||||| |||| ||||||||| ||||||| || |||||||||| | ||
seq2  AAGGGGGAAGGAGAAACACAGCTCTCCATTCTTTTTAACTCTCCTGGAAA  1050

seq1  GCTCAATCAAAAGCTACC-TCCTG-TTGG  1064
      | |||||||||||||||| ||||| ||||
seq2  GTTCAATCAAAAGCTACCTTCCTGATTGG  1079