BAC Information

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BAC

Clone NameB6Ng01-339M13
Chromosome2 (Build37)
Map Location 115,687,358 - 115,823,485
singlet/doubletdoublet
Overlap geneMrg1
Upstream geneLOC100043222, LOC100043232, LOC100043236, BC052040
Downstream geneG630016G05Rik, 2810405F15Rik, LOC433464, Tmco5, LOC100043557
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-339M13.bB6Ng01-339M13.g
ACCGA123682GA123683
length1,1171,110
definitionB6Ng01-339M13.b B6Ng01-339M13.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(115,687,358 - 115,688,486)(115,822,360 - 115,823,485)
sequence
gaattcaaacgaaggctcaaccactctggctgtacccttcctggagtaat
aactccataaaatactttttataaacgtgagcttgtgaccaaggaaaccc
ttcagcaattaccttatggagagcaatgagagaaaagctgccaatataat
ttttcccctttcaactgatatgagagtaagtttataaatgaggaacttgt
cagagtttacatcagagcatttaaagcaaacatatgcaaatatttaaatt
ttacagaaagattccatgtagcatggaacagggataatgagagggaggga
ggctctatgtattttacaagatcagtgtgtttgtgtcaaacactgctatt
tctaggtttaaagagcagtgcactaattaaagtgataaatgcacttataa
aaattttacttaacaatataaaagaaaacaatagcaatttatatccttgc
tcattcatatgtagtgcttccattaaggctgcctaacaaggaaacaggga
agggtttgcctgagaggccactatggagtgcttccaagtggaagtttgta
tgactagtgagctcttccctaccaaatcaaatcatctctccatctcctat
ttatcctcccctttagatggaggcgtcaacatttaggagttaggaaagcc
tcagctgtgtgtttatttggaaactctttgagtgtgcagctatcttaagc
ggctacattttgcacactttagtagacactgcaacatcaacaagcttgtg
gctctagattaccaagtaaagctttgaaaatgctatcaaagtatctcttt
tttttttcttttctttttttttatgaaaaaaaaatttttgaggcaccaga
ctatcatacttgcatccctgcacatggagaaagcaacccttattagaaag
ataccactgtattatttgtactaatattaatgcttaagcactctttaagc
tagaattcccactccatagaaagtgtttactaatctatagacatcatata
tgagctttatgtacagagtcacagtatttgagtagatagagtacagataa
tcatgtttgagcacacacataccttcttatgatataaattacattgataa
tctttattctactggtg

gaattctctataccactaaaaatttccatgaatgcttaggaggaaaaaaa
aaagaaaaagatcaagaagacattcagagtctaggaatcaggagcacttc
atttcaactgctgatttcctctggcagtgtgatgctcagtttagcccatt
aagttatctggctttttctttgcttaatttttcaaatgagagagccacgt
cacagcctccatagatctcttgtctgtaacttttgttgcatttggattct
gcccagggcccttcagcagagcgatgcccccagccccacagtcatctagc
tacttccttcttctcactgctcactgtctgctttctgtttcttctctcca
tgatcttctttcacagattgcttttctttcatggcttcttcctgctggct
ttgtctcctatctttctctctctgttcccctccagacctttttttgcacc
tcccttgcatctcagagaaattctctctggcttttactttgaacatgttt
tctctctccatccacacttcacccccaccgcagagaggacgcctagtaac
tttgatgaggatggtcttgtaaaacttttactttccaatctttaatgagc
tgaaagatttactcagctgtaattctgagctcagaaaccaagaatagagc
cccctaactagcgacatgttaatttagccctcttttcttactcgcagtaa
caggcagaagggagtccttggaaatagggatgccccggtatatttctctg
tcatttaatgaatttcaacattcaaagtgaaatggtggctggaactcact
gaaaatagatgtggtctaaattattatttcatgtaaatttctttacatgt
gtgggattcaatgcacattcttccattatcagtctctttaacattatttc
aaactggtctgtccccttttgtgcagtgtgacctgttctgtagtacaata
tccccgatgtacccttttttctttctttctaaaaaagaagctaatgatat
ctcatattttatttgtaggcaaatgtattttggcatctcagatgtgtttc
ttctagaagaggctgcaaagccttggcccctggaatgcatgcaattggac
attcatgcat
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_115687358_115688486
seq2: B6Ng01-339M13.b_45_1161

seq1  GAATTCAAACGAAGGCTCAACCACTCTGGCTGTACCCTTCCTGGAGTAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAAACGAAGGCTCAACCACTCTGGCTGTACCCTTCCTGGAGTAAT  50

seq1  AACTCCATAAAATACTTTTTATAAACGTGAGCTTGTGACCAAGGAAACCC  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACTCCATAAAATACTTTTTATAAACGTGAGCTTGTGACCAAGGAAACCC  100

seq1  TTCAGCAATTACCTTATGGAGAGCAATGAGAGAAAAGCTGCCAATATAAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCAGCAATTACCTTATGGAGAGCAATGAGAGAAAAGCTGCCAATATAAT  150

seq1  TTTTCCCCTTTCAACTGATATGAGAGTAAGTTTATAAATGAGGAACTTGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCCCTTTCAACTGATATGAGAGTAAGTTTATAAATGAGGAACTTGT  200

seq1  CAGAGTTTACATCAGAGCATTTAAAGCAAACATATGCAAATATTTAAATT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGAGTTTACATCAGAGCATTTAAAGCAAACATATGCAAATATTTAAATT  250

seq1  TTACAGAAAGATTCCATGTAGCATGGAACAGGGATAATGAGAGGGAGGGA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACAGAAAGATTCCATGTAGCATGGAACAGGGATAATGAGAGGGAGGGA  300

seq1  GGCTCTATGTATTTTACAAGATCAGTGTGTTTGTGTCAAACACTGCTATT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTCTATGTATTTTACAAGATCAGTGTGTTTGTGTCAAACACTGCTATT  350

seq1  TCTAGGTTTAAAGAGCAGTGCACTAATTAAAGTGATAAATGCACTTATAA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAGGTTTAAAGAGCAGTGCACTAATTAAAGTGATAAATGCACTTATAA  400

seq1  AAATTTTACTTAACAATATAAAAGAAAACAATAGCAATTTATATCCTTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATTTTACTTAACAATATAAAAGAAAACAATAGCAATTTATATCCTTGC  450

seq1  TCATTCATATGTAGTGCTTCCATTAAGGCTGCCTAACAAGGAAACAGGGA  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATTCATATGTAGTGCTTCCATTAAGGCTGCCTAACAAGGAAACAGGGA  500

seq1  AGGGTTTGCCTGAGAGGCCACTATGGAGTGCTTCCAAGTGGAAGTTTGTA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGGTTTGCCTGAGAGGCCACTATGGAGTGCTTCCAAGTGGAAGTTTGTA  550

seq1  TGACTAGTGAGCTCTTCCCTACCAAATCAAATCATCTCTCCATCTCCTAT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGACTAGTGAGCTCTTCCCTACCAAATCAAATCATCTCTCCATCTCCTAT  600

seq1  TTATCCTCCCCTTTAGATGGAGGCGTCAACATTTAGGAGTTAGGAAAGCC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCCTCCCCTTTAGATGGAGGCGTCAACATTTAGGAGTTAGGAAAGCC  650

seq1  TCAGCTGTGTGTTTATTTGGAAACTCTTTGAGTGTGCAGCTATCTTAAGC  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCTGTGTGTTTATTTGGAAACTCTTTGAGTGTGCAGCTATCTTAAGC  700

seq1  GGCTACATTTTGCACACTTTAGTAGACACTGCAACATCAACAAGCTTGTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACATTTTGCACACTTTAGTAGACACTGCAACATCAACAAGCTTGTG  750

seq1  GCTCTAGATTACCAAGTAAAGCTTTGAAAATGCTATCAAAGTATCTCTTT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTCTAGATTACCAAGTAAAGCTTTGAAAATGCTATCAAAGTATCTCTTT  800

seq1  TTTTTTTCTTTTCTTTTTTTTTATGAAAAAAAAATTTTTGAGGCACCAGA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTTTCTTTTCTTTTTTTTTATGAAAAAAAAATTTTTGAGGCACCAGA  850

seq1  CTATCATACTTGCATCCCTGCACATGGAGAAAGCAA-CCTTATTAGAAAG  899
      |||||||||||||||||||||||||||||||||||| |||||||||||||
seq2  CTATCATACTTGCATCCCTGCACATGGAGAAAGCAACCCTTATTAGAAAG  900

seq1  ATACCACTGTATTATTTGTACTAAATATTAATGCTTAAGCACTCTTTTAA  949
      |||||||||||||||||||||| ||||||||||||||||||||| |||||
seq2  ATACCACTGTATTATTTGTACT-AATATTAATGCTTAAGCACTC-TTTAA  948

seq1  GCTTAGAATTCCCAACTCCATAGAAAGTGTTTACTTATCTATAGACATCA  999
      || |||||||||| ||||||||||||||||||||| ||||||||||||||
seq2  GC-TAGAATTCCC-ACTCCATAGAAAGTGTTTACTAATCTATAGACATCA  996

seq1  TATATGAGCTTTAATGTACAGAGTCAACAGTATTTGAGTAAGATAGAGTA  1049
      |||||||||||| |||||||||||| ||||||||||||| ||||||||||
seq2  TATATGAGCTTT-ATGTACAGAGTC-ACAGTATTTGAGT-AGATAGAGTA  1043

seq1  CAGATAAATCATGTTTGAGCACACACATAACTTCTTATGATATAAAATTA  1099
      ||||| ||||||||||||||||||||||| ||||||||||||||||  | 
seq2  CAGAT-AATCATGTTTGAGCACACACATACCTTCTTATGATATAAA--TT  1090

seq1  ACATGGAATAAACCCTTTATTCTACTGGTG  1129
      |||| | ||||   ||||||||||||||||
seq2  ACATTG-ATAA--TCTTTATTCTACTGGTG  1117


seq1: chr2_115822360_115823485
seq2: B6Ng01-339M13.g_66_1175 (reverse)

seq1  ATGCATGAATGTCAAAATGGGCCAATGGCCCATTCAGGGGGCAAAGCCTT  50
      ||||||||||||| || ||     |||   |||||  ||||| ||| |||
seq2  ATGCATGAATGTCCAATTG----CATG---CATTCCAGGGGCCAAGGCTT  43

seq1  TGCAGCCCTCTTCTAGAAG-AACACATCCTGAGATG-CAAAATACATTTG  98
      ||||| ||||||||||||| ||||||| |||||||| |||||||||||||
seq2  TGCAG-CCTCTTCTAGAAGAAACACAT-CTGAGATGCCAAAATACATTTG  91

seq1  CTTAACAAATTAAAATAATGAGATAATTCAATTAGCTTCTTTTTTAAGAA  148
      | | ||||| |||||| ||||||||  || ||||||||||||||| ||||
seq2  CCT-ACAAA-TAAAAT-ATGAGATA--TC-ATTAGCTTCTTTTTT-AGAA  134

seq1  AGAAAGAAAAAAGGGTACATCGGGGATTATTGTACTACAAGAACAGGTCA  198
      |||||||||||||||||||||||||| ||||||||||| |||||||||||
seq2  AGAAAGAAAAAAGGGTACATCGGGGA-TATTGTACTAC-AGAACAGGTCA  182

seq1  CACTGCACAAAAGGGGACAGACCAGTTTGAAATAATGTTAAAGAGACTGA  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTGCACAAAAGGGGACAGACCAGTTTGAAATAATGTTAAAGAGACTGA  232

seq1  TAATGGAAGAATGTGCATTGAATCCCACACATGTAAAGAAATTTACATGA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAATGGAAGAATGTGCATTGAATCCCACACATGTAAAGAAATTTACATGA  282

seq1  AATAATAATTTAGACCACATCTATTTTCAGTGAGTTCCAGCCACCATTTC  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATAATAATTTAGACCACATCTATTTTCAGTGAGTTCCAGCCACCATTTC  332

seq1  ACTTTGAATGTTGAAATTCATTAAATGACAGAGAAATATACCGGGGCATC  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTTGAATGTTGAAATTCATTAAATGACAGAGAAATATACCGGGGCATC  382

seq1  CCTATTTCCAAGGACTCCCTTCTGCCTGTTACTGCGAGTAAGAAAAGAGG  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTATTTCCAAGGACTCCCTTCTGCCTGTTACTGCGAGTAAGAAAAGAGG  432

seq1  GCTAAATTAACATGTCGCTAGTTAGGGGGCTCTATTCTTGGTTTCTGAGC  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTAAATTAACATGTCGCTAGTTAGGGGGCTCTATTCTTGGTTTCTGAGC  482

seq1  TCAGAATTACAGCTGAGTAAATCTTTCAGCTCATTAAAGATTGGAAAGTA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGAATTACAGCTGAGTAAATCTTTCAGCTCATTAAAGATTGGAAAGTA  532

seq1  AAAGTTTTACAAGACCATCCTCATCAAAGTTACTAGGCGTCCTCTCTGCG  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGTTTTACAAGACCATCCTCATCAAAGTTACTAGGCGTCCTCTCTGCG  582

seq1  GTGGGGGTGAAGTGTGGATGGAGAGAGAAAACATGTTCAAAGTAAAAGCC  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGGGGTGAAGTGTGGATGGAGAGAGAAAACATGTTCAAAGTAAAAGCC  632

seq1  AGAGAGAATTTCTCTGAGATGCAAGGGAGGTGCAAAAAAAGGTCTGGAGG  698
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAGAGAATTTCTCTGAGATGCAAGGGAGGTGCAAAAAAAGGTCTGGAGG  682

seq1  GGAACAGAGAGAGAAAGATAGGAGACAAAGCCAGCAGGAAGAAGCCATGA  748
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACAGAGAGAGAAAGATAGGAGACAAAGCCAGCAGGAAGAAGCCATGA  732

seq1  AAGAAAAGCAATCTGTGAAAGAAGATCATGGAGAGAAGAAACAGAAAGCA  798
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAAAAGCAATCTGTGAAAGAAGATCATGGAGAGAAGAAACAGAAAGCA  782

seq1  GACAGTGAGCAGTGAGAAGAAGGAAGTAGCTAGATGACTGTGGGGCTGGG  848
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAGTGAGCAGTGAGAAGAAGGAAGTAGCTAGATGACTGTGGGGCTGGG  832

seq1  GGCATCGCTCTGCTGAAGGGCCCTGGGCAGAATCCAAATGCAACAAAAGT  898
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCATCGCTCTGCTGAAGGGCCCTGGGCAGAATCCAAATGCAACAAAAGT  882

seq1  TACAGACAAGAGATCTATGGAGGCTGTGACGTGGCTCTCTCATTTGAAAA  948
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACAGACAAGAGATCTATGGAGGCTGTGACGTGGCTCTCTCATTTGAAAA  932

seq1  ATTAAGCAAAGAAAAAGCCAGATAACTTAATGGGCTAAACTGAGCATCAC  998
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGCAAAGAAAAAGCCAGATAACTTAATGGGCTAAACTGAGCATCAC  982

seq1  ACTGCCAGAGGAAATCAGCAGTTGAAATGAAGTGCTCCTGATTCCTAGAC  1048
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCCAGAGGAAATCAGCAGTTGAAATGAAGTGCTCCTGATTCCTAGAC  1032

seq1  TCTGAATGTCTTCTTGATCTTTTTCTTTTTTTTTTCCTCCTAAGCATTCA  1098
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAATGTCTTCTTGATCTTTTTCTTTTTTTTTTCCTCCTAAGCATTCA  1082

seq1  TGGAAATTTTTAGTGGTATAGAGAATTC  1126
      ||||||||||||||||||||||||||||
seq2  TGGAAATTTTTAGTGGTATAGAGAATTC  1110


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