BAC Information

Click to search

BAC

Clone NameB6Ng01-341L18
Chromosome2 (Build37)
Map Location 33,021,854 - 33,148,540
singlet/doubletdoublet
Overlap geneRalgps1, Angptl2
Upstream gene5830434P21Rik, Pomt1, Uck1, LOC622534, 2900010J23Rik, Golga2, Dnm1, Ciz1, 1110008P14Rik, Lcn2, Ptges2, LOC100041671, Slc25a25, 4933440H19Rik, C230093N12Rik, Dpm2, Pip5kl1, St6galnac4, St6galnac6, Ak1, Eng, Fpgs, Cdk9, Sh2d3c, Tor2a, Ttc16, Ptrh1, 1700019L03Rik, Stxbp1, 9130404D14Rik, Lrsam1, Snora65, Slc2a8, Garnl3
Downstream geneZbtb34, Zbtb43, LOC676764, Lmx1b, LOC100041918, 2610528K11Rik, LOC100041931, Pbx3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-341L18.bB6Ng01-341L18.g
ACCGA125032GA125033
length997655
definitionB6Ng01-341L18.b B6Ng01-341L18.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(33,021,854 - 33,022,859)(33,147,888 - 33,148,540)
sequence
gaattccacacccagacctgtctctcaggggctttactttgttggagaag
acagacatagggcaagtgagtatgcagatgactgcaggttaggccatgca
ggctactgccacacaaggtcattgtatgatgtagggctacatcatgtagt
cctgtgagaggctgggcaggaagtaaacccagctttgtagaccatggggg
ccacatcccccaaaaaatcaactccacagctgctcacacaggcaaatata
ggaacatgtggccagatgtcatcctatacagaaaccaggtgagtctgttt
ggtgttcagagcttgctgccccagtgaaaccagacccaactggggtcttg
ggcagtgtcacttagctaaagcctggaggctaactcagtgacagaattcc
cttggcagccacaacctcatcacagctcactaatgagagaggtctgggct
agattctgcacaggtgtcagcagcagccctgtggtagagtgtgcagtgct
gagcatcttggagagcagtttgtctgggggagagttctagaatagtgaca
gatcagaaagtagaaacctgtccaaaaccataactctctgaaccaccatt
accaatggtcatttgcaagggaagacagcagggttttgaggatacagtag
gagacacttaatacaagggtctagagataccatgaaaaatacaaccgtag
acaaccctaactcagcagccctggtgcttccaaggctcatgagaagagga
gcccagaaggtacaaagaagacctctagcttaccactcagaagatagcag
aggctggcacagaaaaaaagcccaggcatattccaaagacagacagagct
tgtgccagcagttcaggccaggagaaactcgccacagtattttcttggag
ggttctggggctggccctacaacacataccccaccagaagtaggagaggg
ctgaccttagagccaaggctgagggaggatgggtacctggaccccgg
gaattcattaagtaacaagaaaatcacaggtgacatcaatttcattgtca
ctaaaaactactgattcatttggcagacatggccactgccaagcacaggg
tcttctattctaatcttaattattaaccctcaggtcacatgtttctgtct
ctctctctctctctctctctctctctctctctcaggtcacatgtttctct
ctctctttctctctctctctctctctctctctctctctctctctgtgaga
gagagagacacagacagagacacagagagagagtggaacagagacagaga
gactacacaagaaccacagagggctttacttaaggcagaagtagacagca
gccacagataaaggagtcattgccagtggatcagagaaggcaggacccag
tcctagagtgggaagtgcagggccgagggtgcatttagtgagccaacttc
ggcagggatatcttgttcgtatcaagttgaaaccctggggtcagagttgg
gagtgcactgcttattggttatgtggtgcaggcacccgatggttaggtga
cggcgtgacggcagaagacagttttattctgtattacattattatataca
gtttacagttcagaagaatgtccgttaaggtgggaaggtcatggtagtgg
gagtg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_33021854_33022859
seq2: B6Ng01-341L18.b_49_1045

seq1  GAATTCCACACCCAGACCTGTCTCTCAGGGGCTTTACTTTGTTGGAGAAG  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCCACACCCAGACCTGTCTCTCAGGGGCTTTACTTTGTTGGAGAAG  50

seq1  ACAGACATAGGGCAAGTGAGTATGCAGATGACTGCAGGTTAGGCCATGCA  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAGACATAGGGCAAGTGAGTATGCAGATGACTGCAGGTTAGGCCATGCA  100

seq1  GGCTACTGCCACACAAGGTCATTGTATGATGTAGGGCTACATCATGTAGT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTACTGCCACACAAGGTCATTGTATGATGTAGGGCTACATCATGTAGT  150

seq1  CCTGTGAGAGGCTGGGCAGGAAGTAAACCCAGCTTTGTAGACCATGGGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTGAGAGGCTGGGCAGGAAGTAAACCCAGCTTTGTAGACCATGGGGG  200

seq1  CCACATCCCCCAAAAAATCAACTCCACAGCTGCTCACACAGGCAAATATA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCACATCCCCCAAAAAATCAACTCCACAGCTGCTCACACAGGCAAATATA  250

seq1  GGAACATGTGGCCAGATGTCATCCTATACAGAAACCAGGTGAGTCTGTTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACATGTGGCCAGATGTCATCCTATACAGAAACCAGGTGAGTCTGTTT  300

seq1  GGTGTTCAGAGCTTGCTGCCCCAGTGAAACCAGACCCAACTGGGGTCTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTGTTCAGAGCTTGCTGCCCCAGTGAAACCAGACCCAACTGGGGTCTTG  350

seq1  GGCAGTGTCACTTAGCTAAAGCCTGGAGGCTAACTCAGTGACAGAATTCC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCAGTGTCACTTAGCTAAAGCCTGGAGGCTAACTCAGTGACAGAATTCC  400

seq1  CTTGGCAGCCACAACCTCATCACAGCTCACTAATGAGAGAGGTCTGGGCT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTGGCAGCCACAACCTCATCACAGCTCACTAATGAGAGAGGTCTGGGCT  450

seq1  AGATTCTGCACAGGTGTCAGCAGCAGCCCTGTGGTAGAGTGTGCAGTGCT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTCTGCACAGGTGTCAGCAGCAGCCCTGTGGTAGAGTGTGCAGTGCT  500

seq1  GAGCATCTTGGAGAGCAGTTTGTCTGGGGGAGAGTTCTAGAATAGTGACA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGCATCTTGGAGAGCAGTTTGTCTGGGGGAGAGTTCTAGAATAGTGACA  550

seq1  GATCAGAAAGTAGAAACCTGTCCAAAACCATAACTCTCTGAACCACCATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATCAGAAAGTAGAAACCTGTCCAAAACCATAACTCTCTGAACCACCATT  600

seq1  ACCAATGGTCATTTGCAAGGGAAGACAGCAGGGTTTTGAGGATACAGTAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAATGGTCATTTGCAAGGGAAGACAGCAGGGTTTTGAGGATACAGTAG  650

seq1  GAGACACTTAATACAAGGGTCTAGAGATACCATGAAAAAATACAACCGTA  700
      |||||||||||||||||||||||||||||||||| |||||||||||||||
seq2  GAGACACTTAATACAAGGGTCTAGAGATACCATG-AAAAATACAACCGTA  699

seq1  GACAACCCTAACTCAGCAGCCCTGGTGCTTCCAAGGCTCATGAGAAGAGG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GACAACCCTAACTCAGCAGCCCTGGTGCTTCCAAGGCTCATGAGAAGAGG  749

seq1  AGCCCAG-AGGTACAAAGAAGA-CTCTAGCTTACCACTCAG-AGATAGCA  797
      ||||||| |||||||||||||| |||||||||||||||||| ||||||||
seq2  AGCCCAGAAGGTACAAAGAAGACCTCTAGCTTACCACTCAGAAGATAGCA  799

seq1  GAGGCTGGCACAG-AAAAAAGCCAAGGGCATATTCCAGAGACAGGACAGA  846
      ||||||||||||| ||||||||| | ||||||||||| ||||| ||||||
seq2  GAGGCTGGCACAGAAAAAAAGCCCA-GGCATATTCCAAAGACA-GACAGA  847

seq1  GGCTGTG-CAGCAGGGTCAGGGCAGGAAGGAAACT-GCCACAGTATTTCC  894
      |  |||| ||||| | ||||| |||||  |||||| |||||||||||| |
seq2  GCTTGTGCCAGCA-GTTCAGGCCAGGA--GAAACTCGCCACAGTATTTTC  894

seq1  T--GAGGGTTCTGTGGGCCTGGCCCTACCAACACATACCCCAGCAGGAAG  942
      |  ||||||||  |||| ||||||||| |||||||||||||| || ||||
seq2  TTGGAGGGTTC--TGGGGCTGGCCCTA-CAACACATACCCCACCA-GAAG  940

seq1  TAAGGAGA-GGCTGACCTGAGTAGCCCAAGGCTGAGGGAGGGATGGCGTA  991
      | |||||| ||||||||| || || |||||||||||||| |||||| || 
seq2  T-AGGAGAGGGCTGACCTTAG-AG-CCAAGGCTGAGGGA-GGATGG-GT-  984

seq1  ACACCGTGACCCCGG  1006
        |||  ||||||||
seq2  --ACCTGGACCCCGG  997

seq1: chr2_33147888_33148540
seq2: B6Ng01-341L18.g_70_724 (reverse)

seq1  CACTCCCACTACCATG-CCTTCCCACCTTAACGGACATTCTTCTGAACTG  49
      |||||||||||||||| |||||||||||||||||||||||||||||||||
seq2  CACTCCCACTACCATGACCTTCCCACCTTAACGGACATTCTTCTGAACTG  50

seq1  TAAACTGTAT-TTATTCTGTAATACAGAATAAAACTGTCCTCTGCCGTCA  98
      |||||||||| | ||  |||||||||||||||||||||| ||||||||||
seq2  TAAACTGTATATAATAATGTAATACAGAATAAAACTGTCTTCTGCCGTCA  100

seq1  CGCCGTCACCTAACCATCGGGTGCCTGCACCACATAACCAATAAGCAGTG  148
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGCCGTCACCTAACCATCGGGTGCCTGCACCACATAACCAATAAGCAGTG  150

seq1  CACTCCCAACTCTGACCCCAGGGTTTCAACTTGATACGAACAAGATATCC  198
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACTCCCAACTCTGACCCCAGGGTTTCAACTTGATACGAACAAGATATCC  200

seq1  CTGCCGAAGTTGGCTCACTAAATGCACCCTCGGCCCTGCACTTCCCACTC  248
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCGAAGTTGGCTCACTAAATGCACCCTCGGCCCTGCACTTCCCACTC  250

seq1  TAGGACTGGGTCCTGCCTTCTCTGATCCACTGGCAATGACTCCTTTATCT  298
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGACTGGGTCCTGCCTTCTCTGATCCACTGGCAATGACTCCTTTATCT  300

seq1  GTGGCTGCTGTCTACTTCTGCCTTAAGTAAAGCCCTCTGTGGTTCTTGTG  348
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGCTGCTGTCTACTTCTGCCTTAAGTAAAGCCCTCTGTGGTTCTTGTG  350

seq1  TAGTCTCTCTGTCTCTGTTCCACTCTCTCTCTGTGTCTCTGTCTGTGTCT  398
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGTCTCTCTGTCTCTGTTCCACTCTCTCTCTGTGTCTCTGTCTGTGTCT  400

seq1  CTCTCTCTCACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAA  448
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCTCTCACAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAAA  450

seq1  GAGAGAGAGAAACATGTGACCTGAGAGAGAGAGAGAGAGAGAGAGAGAGA  498
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGAGAAACATGTGACCTGAGAGAGAGAGAGAGAGAGAGAGAGAGA  500

seq1  GAGAGAGACAGAAACATGTGACCTGAGGGTTAATAATTAAGATTAGAATA  548
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAGAGACAGAAACATGTGACCTGAGGGTTAATAATTAAGATTAGAATA  550

seq1  GAAGACCCTGTGCTTGGCAGTGGCCATGTCTGCCAAATGAATCAGTAGTT  598
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGACCCTGTGCTTGGCAGTGGCCATGTCTGCCAAATGAATCAGTAGTT  600

seq1  TTTAGTGACAATGAAATTGATGTCACCTGTGATTTTCTTGTTACTTAATG  648
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAGTGACAATGAAATTGATGTCACCTGTGATTTTCTTGTTACTTAATG  650

seq1  AATTC  653
      |||||
seq2  AATTC  655