BAC Information

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BAC

Clone NameB6Ng01-342H22
Chromosome2 (Build37)
Map Location 86,117,071 - 86,173,481
singlet/doubletdoublet
Overlap geneOlfr1052, Olfr1053-ps1, Olfr1054
Upstream geneOlfr987, GA_x5J8B7W531T-1241080-1240524, Olfr988, GA_x5J8B7W531T-1286425-1285652, Olfr990-ps1, Olfr991-ps1, Olfr992, Olfr993, Olfr994, Olfr995, 4833423E24Rik, Olfr996, Olfr997-ps1, Olfr998, Olfr999-ps1, Olfr1000, Olfr1001-ps1, Olfr1002, GA_x5J8B7W531T-1558688-1559570, Olfr1004-ps1, Olfr154, GA_x5J8B7W531T-1577060-1577325, Olfr1006, GA_x5J8B7W531T-1588603-1588734, Olfr1008, Olfr1009, Olfr1010, Olfr1012, Olfr1013, Olfr1014, Olfr1015, Olfr1016, GA_x5J8B7W3KVV-518538-519236, Olfr1018, Olfr1019, Olfr1020, Olfr1021-ps1, Olfr1022, Olfr1023, Olfr1024, Olfr1025-ps1, Olfr1026, Olfr1027-ps1, Olfr1028, Olfr1029, Olfr1030, Olfr1031, Olfr1032, LOC100042075, Olfr1033, Olfr1034, Olfr1533-ps1, Olfr1035-ps1, Olfr1036, Olfr1037, LOC100041372, Olfr1038, Olfr1039, Olfr1040, GA_x5J8B7W3KVV-170014-170572, Olfr1042, Olfr1043, Olfr1044, Olfr52, Olfr1045, Olfr1046, Olfr1047, Olfr1048, Olfr1049, Olfr1050-ps1, Olfr1051, GA_x5J8B7W3KVV-25848-25992
Downstream geneOlfr1055, Olfr1056, Olfr1057, GA_x5J8B7TRQ4E-1174-939, Olfr1058, Olfr1059-ps1, Olfr1515, Olfr1062, Olfr1063-ps1, Olfr1064-ps1, Olfr1065, Olfr1066, Olfr1069-ps1, Olfr1070-ps1, Olfr228, Olfr1073-ps1, Olfr1075-ps1, GA_x5J8B7W4CQV-104617-103730, Olfr1076, LOC625853, Olfr1078-ps1, GA_x5J8B7W4CQV-78329-78805, Olfr1079, Olfr1080, Olfr1081-ps1, Olfr1082, GA_x5J8B7W4CQV-18360-18784, Olfr1083, Olfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-342H22.bB6Ng01-342H22.g
ACCGA125562GA125563
length1,1321,149
definitionB6Ng01-342H22.b B6Ng01-342H22.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(86,172,351 - 86,173,481)(86,117,071 - 86,118,238)
sequence
gaattcatactgatgggcatcactgacaggcctgagcttcaggctccatt
gttcggcttgtttctcatcatctatctgatctcactgttgggcaacatgg
gcatgatcatccttaccatggtggactcccgattgcaaacacccatgtac
ttctttctcagacatctggctatcactgatcttggttattctacagctgt
gggacccaaaatgctggaaaattttgttgtcaatcagaatacaatcagta
atcatctttgtgcaatacagctaactttctttcttgtgttcatcatttgt
gaactctttattctctctgcaatgtcctatgaccgctatgtggccatctg
taagcctctactctatactgtcatcatgtcccatagggtatgctgggtcc
tagtggcagttccttatttctatagtgtcattatttctcttctaataact
ataaaaatttttgctttacctttttgtgattacaggatcgttagtcattt
ctgcgatagtctccctttaatatcattgctctgttctaatacacatgata
ttgaaattataatattgatttcagcggggtttaatttggtttcatctctc
gtggtactcctcttttcttatctactcattcttatagccatttttagaat
gaattcagctgaaggcaggcagaaagctttgtctacttgtggatcccact
tgacagtggtcattgtcttctatgggactttgatatttatgtatgtgcag
cccaaatcaagtcactcatttgacactgataaggtggcttccatctttta
tactctgattatccccatgttgaatcccttgatctatagtctaaggaaca
aagatgtaaaatatgccctagaaaggttgtggaaaatgttaggcaatatt
ttttcttaatgtagtacaccaaatgaaccttgtaaattgtattatgggaa
ttttctattctatgtgtgtatttaatttaatagaaattaaaataatatct
gacgtgttatttatcttattgtctaaatttgccacccaccattattgttc
taaataaatcagtgaaaattaacaaaaaaagatgttatttcagtcaggtt
ttgtaccttttgaaagaaacttcatgttgata
gaattcacctcttacttgccttgtggtttgtatagtcagattaatagaat
agattaccattcttcttaaaaattcaggtgcagtctttatttcctccagg
ccatagactgtcaaatgtaatctcacaatcatgtaatcaattaaatattg
tgtactaataatgtagctaggatcaataagtgtggtttgtcttgttacaa
taacttccttagacaagcattagctcagccaactaaagtgaaaatgatta
ctgtacaattctctcttatcttactctccatttcatttttaatagagaaa
acccaaaattagcataaagctaatgtgatcataatctattcccaaaaata
cacctgatttaaatcaatatccaaagaggtcaaatttttaattcaatatt
ctttatttctttcctcactgttgaaataaattttataaagcagttaatta
tttaaatttttattatttgatttgttaatgatgtataatttaaaattttt
caaaatatttcaattataacaaatttatttttgtaataaatgtaaataat
tagaaaagatttagtaacagtgaatttgatttaaccctaataaatttgag
ttcctttcttactgtattctgtttgacctcaataggaatgtgtggattca
taagcatgattttaagaataataacaactaaagtattctatgatgttttg
tgatgtattggaaagttataactggaaaaactaggattttactagaagat
acaattctttagtttgaaacaggggctatatgtatctagcttattgaagt
tagaagcaatctaaaaatctacatttggtattccattcagtattttactt
ttctgatttttaagatgggatgtgaggaaaaggtggtgttcatagctgct
ggggcactctatacattcttttgaattttacagttatatttaatgtgttt
attgtgtgtgaggctacataaataccatggagtgggtatgtagtcacagc
aatttgtagatctgtgtaatctacatacacattaggagtaacgcagctgt
cactctggtattcagtgtctacctgctgagacttctttgccagccgatcc
tcttcgaattagttctgcatttcccctttttcaattttcagaaaattgt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_86172351_86173481
seq2: B6Ng01-342H22.b_46_1177 (reverse)

seq1  TATCAAACATGAAGTTTCTTTCAAAAGTTAACAAACTTGACTGAAAATAC  50
      |||| |||||||||||||||||||||| ||  |||| |||||||||  ||
seq2  TATC-AACATGAAGTTTCTTTCAAAAGGTACAAAACCTGACTGAAATAAC  49

seq1  ATC--TTTTTGTAAATTTTCACTGATTTATTTAGAACAATTAATGGTGGG  98
      |||  ||||||| |||||||||||||||||||||||||| ||||||||||
seq2  ATCTTTTTTTGTTAATTTTCACTGATTTATTTAGAACAA-TAATGGTGGG  98

seq1  T-GCAAATTTTAAGACAAT-AGATAAAT-ACACGTCAGATATTATTTTAA  145
      | ||||||||  ||||||| |||||||| |||||||||||||||||||||
seq2  TGGCAAATTT--AGACAATAAGATAAATAACACGTCAGATATTATTTTAA  146

seq1  TTTCTATTAAATTAAATACACACATAGAATAGAAAATTCCCATAATACAA  195
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTATTAAATTAAATACACACATAGAATAGAAAATTCCCATAATACAA  196

seq1  TTTACAAGGTTCATTTGGTGTACTACATTAAGAAAAAATATTGCCTAACA  245
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTACAAGGTTCATTTGGTGTACTACATTAAGAAAAAATATTGCCTAACA  246

seq1  TTTTCCACAACCTTTCTAGGGCATATTTTACATCTTTGTTCCTTAGACTA  295
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTCCACAACCTTTCTAGGGCATATTTTACATCTTTGTTCCTTAGACTA  296

seq1  TAGATCAAGGGATTCAACATGGGGATAATCAGAGTATAAAAGATGGAAGC  345
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGATCAAGGGATTCAACATGGGGATAATCAGAGTATAAAAGATGGAAGC  346

seq1  CACCTTATCAGTGTCAAATGAGTGACTTGATTTGGGCTGCACATACATAA  395
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTTATCAGTGTCAAATGAGTGACTTGATTTGGGCTGCACATACATAA  396

seq1  ATATCAAAGTCCCATAGAAGACAATGACCACTGTCAAGTGGGATCCACAA  445
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATCAAAGTCCCATAGAAGACAATGACCACTGTCAAGTGGGATCCACAA  446

seq1  GTAGACAAAGCTTTCTGCCTGCCTTCAGCTGAATTCATTCTAAAAATGGC  495
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTAGACAAAGCTTTCTGCCTGCCTTCAGCTGAATTCATTCTAAAAATGGC  496

seq1  TATAAGAATGAGTAGATAAGAAAAGAGGAGTACCACGAGAGATGAAACCA  545
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATAAGAATGAGTAGATAAGAAAAGAGGAGTACCACGAGAGATGAAACCA  546

seq1  AATTAAACCCCGCTGAAATCAATATTATAATTTCAATATCATGTGTATTA  595
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTAAACCCCGCTGAAATCAATATTATAATTTCAATATCATGTGTATTA  596

seq1  GAACAGAGCAATGATATTAAAGGGAGACTATCGCAGAAATGACTAACGAT  645
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGAGCAATGATATTAAAGGGAGACTATCGCAGAAATGACTAACGAT  646

seq1  CCTGTAATCACAAAAAGGTAAAGCAAAAATTTTTATAGTTATTAGAAGAG  695
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTGTAATCACAAAAAGGTAAAGCAAAAATTTTTATAGTTATTAGAAGAG  696

seq1  AAATAATGACACTATAGAAATAAGGAACTGCCACTAGGACCCAGCATACC  745
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATAATGACACTATAGAAATAAGGAACTGCCACTAGGACCCAGCATACC  746

seq1  CTATGGGACATGATGACAGTATAGAGTAGAGGCTTACAGATGGCCACATA  795
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTATGGGACATGATGACAGTATAGAGTAGAGGCTTACAGATGGCCACATA  796

seq1  GCGGTCATAGGACATTGCAGAGAGAATAAAGAGTTCACAAATGATGAACA  845
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCGGTCATAGGACATTGCAGAGAGAATAAAGAGTTCACAAATGATGAACA  846

seq1  CAAGAAAGAAAGTTAGCTGTATTGCACAAAGATGATTACTGATTGTATTC  895
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGAAAGAAAGTTAGCTGTATTGCACAAAGATGATTACTGATTGTATTC  896

seq1  TGATTGACAACAAAATTTTCCAGCATTTTGGGTCCCACAGCTGTAGAATA  945
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTGACAACAAAATTTTCCAGCATTTTGGGTCCCACAGCTGTAGAATA  946

seq1  ACCAAGATCAGTGATAGCCAGATGTCTGAGAAAGAAGTACATGGGTGTTT  995
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGATCAGTGATAGCCAGATGTCTGAGAAAGAAGTACATGGGTGTTT  996

seq1  GCAATCGGGAGTCCACCATGGTAAGGATGATCATGCCCATGTTGCCCAAC  1045
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATCGGGAGTCCACCATGGTAAGGATGATCATGCCCATGTTGCCCAAC  1046

seq1  AGTGAGATCAGATAGATGATGAGAAACAAGCCGAACAATGGAGCCTGAAG  1095
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTGAGATCAGATAGATGATGAGAAACAAGCCGAACAATGGAGCCTGAAG  1096

seq1  CTCAGGCCTGTCAGTGATGCCCATCAGTATGAATTC  1131
      ||||||||||||||||||||||||||||||||||||
seq2  CTCAGGCCTGTCAGTGATGCCCATCAGTATGAATTC  1132

seq1: chr2_86117071_86118238
seq2: B6Ng01-342H22.g_63_1211

seq1  GAATTCACCTCTTACTTGCCTTGTGGTTTGTATAGTCAGATTAATAGAAT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACCTCTTACTTGCCTTGTGGTTTGTATAGTCAGATTAATAGAAT  50

seq1  AGATTACCATTCTTCTTAAAAATTCAGGTGCAGTCTTTATTTCCTCCAGG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATTACCATTCTTCTTAAAAATTCAGGTGCAGTCTTTATTTCCTCCAGG  100

seq1  CCATAGACTGTCAAATGTAATCTCACAATCATGTAATCAATTAAATATTG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCATAGACTGTCAAATGTAATCTCACAATCATGTAATCAATTAAATATTG  150

seq1  TGTACTAATAATGTAGCTAGGATCAATAAGTGTGGTTTGTCTTGTTACAA  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTACTAATAATGTAGCTAGGATCAATAAGTGTGGTTTGTCTTGTTACAA  200

seq1  TAACTTCCTTAGACAAGCATTAGCTCAGCCAACTAAAGTGAAAATGATTA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACTTCCTTAGACAAGCATTAGCTCAGCCAACTAAAGTGAAAATGATTA  250

seq1  CTGTACAATTCTCTCTTATCTTACTCTCCATTTCATTTTTAATAGAGAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACAATTCTCTCTTATCTTACTCTCCATTTCATTTTTAATAGAGAAA  300

seq1  ACCCAAAATTAGCATAAAGCTAATGTGATCATAATCTATTCCCAAAAATA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCAAAATTAGCATAAAGCTAATGTGATCATAATCTATTCCCAAAAATA  350

seq1  CACCTGATTTAAATCAATATCCAAAGAGGTCAAATTTTTAATTCAATATT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACCTGATTTAAATCAATATCCAAAGAGGTCAAATTTTTAATTCAATATT  400

seq1  CTTTATTTCTTTCCTCACTGTTGAAATAAATTTTATAAAGCAGTTAATTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTATTTCTTTCCTCACTGTTGAAATAAATTTTATAAAGCAGTTAATTA  450

seq1  TTTAAATTTTTATTATTTGATTTGTTAATGATGTATAATTTAAAATTTTT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTAAATTTTTATTATTTGATTTGTTAATGATGTATAATTTAAAATTTTT  500

seq1  CAAAATATTTCAATTATAACAAATTTATTTTTGTAATAAATGTAAATAAT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAATATTTCAATTATAACAAATTTATTTTTGTAATAAATGTAAATAAT  550

seq1  TAGAAAAGATTTAGTAACAGTGAATTTGATTTAACCCTAATAAATTTGAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAAAGATTTAGTAACAGTGAATTTGATTTAACCCTAATAAATTTGAG  600

seq1  TTCCTTTCTTACTGTATTCTGTTTGACCTCAATAGGAATGTGTGGATTCA  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTCTTACTGTATTCTGTTTGACCTCAATAGGAATGTGTGGATTCA  650

seq1  TAAGCATGATTTTAAGAATAATAACAACTAAAGTATTCTATGATGTTTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGCATGATTTTAAGAATAATAACAACTAAAGTATTCTATGATGTTTTG  700

seq1  TGATGTATTGGAAAGTTATAACTGGAAAAACTAGGATTTTACTAGAAGAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATGTATTGGAAAGTTATAACTGGAAAAACTAGGATTTTACTAGAAGAT  750

seq1  ACAATTCTTTAGTTTGAAACAGGGGCTATATGTATCTAGCTTATTGAAGT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAATTCTTTAGTTTGAAACAGGGGCTATATGTATCTAGCTTATTGAAGT  800

seq1  TAGAAGCAATCTAAAAATCTACATTTGGTATTCCATTCAGTATTTTACTT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGAAGCAATCTAAAAATCTACATTTGGTATTCCATTCAGTATTTTACTT  850

seq1  TTCTGATTTTTAAGATGGGATGTGAGGAAAAGGTGGTGTTCATAGCTGCT  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTGATTTTTAAGATGGGATGTGAGGAAAAGGTGGTGTTCATAGCTGCT  900

seq1  GGGGCACTCTATACATTCTTTTGAATTTTACAGTTATATTTAATGTGTTT  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGGCACTCTATACATTCTTTTGAATTTTACAGTTATATTTAATGTGTTT  950

seq1  ATTTGTGTGTGGAGGCTACATAAATACCATGGAGTGGGTATGTAGGTCAC  1000
      | |||||||| ||||||||||||||||||||||||||||||||| |||||
seq2  A-TTGTGTGT-GAGGCTACATAAATACCATGGAGTGGGTATGTA-GTCAC  997

seq1  AGGCAATTTGTAGATTTCTGTGTTTATTTCTACCATACACATTAAGGAGT  1050
      | ||||||||||||  |||||||     |||| |||||||||| ||||||
seq2  A-GCAATTTGTAGA--TCTGTGT---AATCTA-CATACACATT-AGGAGT  1039

seq1  AAACGCAGGCTGTCACTCTGGGTATCCAGTGTCCTTACCTGCTGAGACTT  1100
       |||||| ||||||||||| ||||| |||||||  |||||||||||||||
seq2  -AACGCA-GCTGTCACTCT-GGTATTCAGTGTC--TACCTGCTGAGACTT  1084

seq1  CTTGGCAGCCCGATTTCCTCTTCTAAATTAGGGTTTTCTGCTATTTCTCT  1150
      ||| ||   ||||  ||||||||  ||||||    ||||||  || | ||
seq2  CTTTGCCAGCCGA--TCCTCTTC-GAATTAG----TTCTGCATTTCCCCT  1127

seq1  TTTT---ATTTCAG-ATATTGT  1168
      ||||    |||||| | |||||
seq2  TTTTCAATTTTCAGAAAATTGT  1149