BAC Information

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BAC

Clone NameB6Ng01-344M17
Chromosome2 (Build37)
Map Location 49,773,507 - 49,866,009
singlet/doubletdoublet
Overlap gene2310010M24Rik
Upstream geneOrc4l, LOC100041508, Mbd5, LOC100042719, LOC666709, LOC435666, Epc2, Kif5c
Downstream geneLypd6, 2010311D03Rik, LOC666781, LOC227885
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-344M17.bB6Ng01-344M17.g
ACCGA127187GA127188
length1,1321,113
definitionB6Ng01-344M17.b B6Ng01-344M17.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(49,864,851 - 49,866,009)(49,773,507 - 49,774,640)
sequence
gaattcacttaagaaccactgaactagcacattaaataggtctcattatc
ccaggaattttcaaagctgtactatatttacaatacttttttcttctcaa
taaacgtcctggaaggctgtgatgactgaagtcctaggccaagcactggg
gctccatcgtaagcagacacctcactcacagtatgtataaataaatggag
gacagaccacaggcagaaaacaaaagcccaaaacaaagggctgcagtgtg
gctctcagaggggagtaaactgtgcagagtgtctcaatataagcaactta
gtttgagagggcttcaactctgggcaacttttagggtgtaagagatggga
aaaaaataataacaagaacaacaaaaaacaaaaacaaggggctggtgaga
tggctcagtgggtaagagcacctgactgctcttccgaaggtccagagttc
aaatcccagcaaccacatggtggctcacaaccatccataacaagacctga
ctccctcttctggtgtgtctgaagacagctacagtgtacttacatataat
caataaataaatctttaaaaaaacaaaaaaaaacaaaaaaaaaaacaaaa
aaacaaaaacaaaaacaaaagataaaccaaccaaccaatcaatcagacaa
acaaaaacccttagctgtcctctgatggttagtgtgtattttgaaatgag
atttacataactaatgataactcatgattcctagttgtaggtgatagctt
ttactctgccagcctcagacagttggtcagaataactaatattctcggaa
aatgggtgatgggacgtaacgtgtgaaagaagaagctgtatttgttgtca
gagctgtatgcacgaccgtaaatatttcatcttcctaacagtaacctcat
gaccttggtaaatgtgaggatctctatttgataaatcaggaaattgaagt
tcatggctattaaacacttgctcagggtctcacgtttatacttgtacagt
gagatttgacaggtttggtttttttatagcaaattagccctctctttatg
ctatttatccactctatcggttgctatttctaaatatcatgtttaacaca
ctttatggttagtctaacaaatcttatactgc
gaattctccgaagtggtgcagacgggttcaggcagctacacaagatattt
tacctctcagaccaagtcctttcctttcagtggctcttagcagctagttg
gcaatgtagataactgttgtaaagtccggatttttttttttttatgttgg
tgaattgcttgtgaagtctacagagctgtgtgatttattaagtagatttt
atatttctaacagggaggattaaaaagacaagctctactgctccgatcag
cacatatgctgtggatgtaattgtttctccagatttttagctggtgtgtt
tttctgttagcaggataggccagctcctgattttattttttttttaaaac
cacacattctggagatccaggcattaatcagtttgcagagagctgccaat
tcctatcttccagtctcttgccaccagcaaaatctcaaactacgcctcac
tcttctgcatcttctatcttgaagggggtgtactatcttgggggtgcagc
tcttcgggaccttcaactctaacatcgcttgctttctccagcttttctga
attaagagcaaacacctcagctgcttcccaattctctttgttactagata
attcacaaagctggtaggaaaaatttcagcattgagttcagacataaact
gctacatcttcagtagaaacttgccacaaaatgttatcacctttatttat
tttccctgacaatgagaaaagggaaggagatttgtatgctggggaatctg
cttcgctgactggagaggaggcggcttctgctttgcctaacttctctcca
gaagatttaatcagtgtgcgccgtcaagaaagaaggatggtctcgcctcc
tgaagatgctttgtctgaaatgataaacacagttaaggtgacagcaggcc
cgcgtgcaaagtgagggaactcttgtttatgactggaatatacaagacag
attaccaggggcttgtgcctttttttctctccctaacttcctgattcagc
agatgtgctgggctgcactatgctgctctgcgtagaaatccagcagcgat
gattctcactcatagtgcttctaggtagtattcttgtagcagtagagtca
agcaagtctcagt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_49864851_49866009
seq2: B6Ng01-344M17.b_49_1180 (reverse)

seq1  GCAGTATAGAGATTTGTGATGACTACACCATAAAGTGGTGTTATAAACAC  50
      |||||||| |||||||| | ||||| |||||||||| ||||  |||||| 
seq2  GCAGTATA-AGATTTGTTA-GACTA-ACCATAAAGT-GTGT--TAAACA-  43

seq1  TGATATTTTAAGAAATAGCAAAACACGATAGAGTGGATAAAATAGGCAAT  100
      ||||||||  |||||||||||    ||||||||||||| ||||||   ||
seq2  TGATATTT--AGAAATAGCAA---CCGATAGAGTGGAT-AAATAG--CAT  85

seq1  AAAGGAAGAAGGGGCTAAATTTGCTAATAAAAAAAACCAAACCTGTCAAA  150
      ||||  |||  ||||| |||||||||   |||||||||||||||||||||
seq2  AAAG--AGA--GGGCT-AATTTGCTA--TAAAAAAACCAAACCTGTCAAA  128

seq1  TCTTCACTGTACAAGTTAATAAACGTGAGACCCTGAGCAAGTGTTTTAAT  200
      || |||||||||||||  ||||||||||||||||||||||||| ||||||
seq2  TC-TCACTGTACAAGT--ATAAACGTGAGACCCTGAGCAAGTG-TTTAAT  174

seq1  AGCCATGAACTTCAATTTCCTGATTTATCAAATAGAGATCCTCACATTTT  250
      |||||||||||||||||||||||||||||||||||||||||||||| |||
seq2  AGCCATGAACTTCAATTTCCTGATTTATCAAATAGAGATCCTCACA-TTT  223

seq1  ACCAAGGTCATGAGGTTACTGTTAGGAAGATGAAATATTTACGGTCGTGC  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAAGGTCATGAGGTTACTGTTAGGAAGATGAAATATTTACGGTCGTGC  273

seq1  ATACAGCTCTGACAACAAATACAGCTTCTTCTTTCACACGTTACGTCCCA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATACAGCTCTGACAACAAATACAGCTTCTTCTTTCACACGTTACGTCCCA  323

seq1  TCACCCATTTTCCGAGAATATTAGTTATTCTGACCAACTGTCTGAGGCTG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCACCCATTTTCCGAGAATATTAGTTATTCTGACCAACTGTCTGAGGCTG  373

seq1  GCAGAGTAAAAGCTATCACCTACAACTAGGAATCATGAGTTATCATTAGT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAGAGTAAAAGCTATCACCTACAACTAGGAATCATGAGTTATCATTAGT  423

seq1  TATGTAAATCTCATTTCAAAATACACACTAACCATCAGAGGACAGCTAAG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGTAAATCTCATTTCAAAATACACACTAACCATCAGAGGACAGCTAAG  473

seq1  GGTTTTTGTTTGTCTGATTGATTGGTTGGTTGGTTTATCTTTTGTTTTTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTTTTTGTTTGTCTGATTGATTGGTTGGTTGGTTTATCTTTTGTTTTTG  523

seq1  TTTTTGTTTTTTTGTTTTTTTTTTTGTTTTTTTTTGTTTTTTTAAAGATT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTGTTTTTTTGTTTTTTTTTTTGTTTTTTTTTGTTTTTTTAAAGATT  573

seq1  TATTTATTGATTATATGTAAGTACACTGTAGCTGTCTTCAGACACACCAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTTATTGATTATATGTAAGTACACTGTAGCTGTCTTCAGACACACCAG  623

seq1  AAGAGGGAGTCAGGTCTTGTTATGGATGGTTGTGAGCCACCATGTGGTTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGGAGTCAGGTCTTGTTATGGATGGTTGTGAGCCACCATGTGGTTG  673

seq1  CTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCAGGTGCTCTTACCC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGGATTTGAACTCTGGACCTTCGGAAGAGCAGTCAGGTGCTCTTACCC  723

seq1  ACTGAGCCATCTCACCAGCCCCTTGTTTTTGTTTTTTGTTGTTCTTGTTA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGAGCCATCTCACCAGCCCCTTGTTTTTGTTTTTTGTTGTTCTTGTTA  773

seq1  TTATTTTTTTCCCATCTCTTACACCCTAAAAGTTGCCCAGAGTTGAAGCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATTTTTTTCCCATCTCTTACACCCTAAAAGTTGCCCAGAGTTGAAGCC  823

seq1  CTCTCAAACTAAGTTGCTTATATTGAGACACTCTGCACAGTTTACTCCCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCTCAAACTAAGTTGCTTATATTGAGACACTCTGCACAGTTTACTCCCC  873

seq1  TCTGAGAGCCACACTGCAGCCCTTTGTTTTGGGCTTTTGTTTTCTGCCTG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTGAGAGCCACACTGCAGCCCTTTGTTTTGGGCTTTTGTTTTCTGCCTG  923

seq1  TGGTCTGTCCTCCATTTATTTATACATACTGTGAGTGAGGTGTCTGCTTA  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTCTGTCCTCCATTTATTTATACATACTGTGAGTGAGGTGTCTGCTTA  973

seq1  CGATGGAGCCCCAGTGCTTGGCCTAGGACTTCAGTCATCACAGCCTTCCA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGATGGAGCCCCAGTGCTTGGCCTAGGACTTCAGTCATCACAGCCTTCCA  1023

seq1  GGACGTTTATTGAGAAGAAAAAAGTATTGTAAATATAGTACAGCTTTGAA  1100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGACGTTTATTGAGAAGAAAAAAGTATTGTAAATATAGTACAGCTTTGAA  1073

seq1  AATTCCTGGGATAATGAGACCTATTTAATGTGCTAGTTCAGTGGTTCTTA  1150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTCCTGGGATAATGAGACCTATTTAATGTGCTAGTTCAGTGGTTCTTA  1123

seq1  AGTGAATTC  1159
      |||||||||
seq2  AGTGAATTC  1132

seq1: chr2_49773507_49774640
seq2: B6Ng01-344M17.g_66_1178

seq1  GAATTCTCCGAAGTGGTGCAGACGGGTTCAGGCAGCTACACAAGATATTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCTCCGAAGTGGTGCAGACGGGTTCAGGCAGCTACACAAGATATTT  50

seq1  TACCTCTCAGACCAAGTCCTTTCCTTTCAGTGGCTCTTAGCAGCTAGTTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TACCTCTCAGACCAAGTCCTTTCCTTTCAGTGGCTCTTAGCAGCTAGTTG  100

seq1  GCAATGTAGATAACTGTTGTAAAGTCCGGATTTTTTTTTTTTTATGTTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCAATGTAGATAACTGTTGTAAAGTCCGGATTTTTTTTTTTTTATGTTGG  150

seq1  TGAATTGCTTGTGAAGTCTACAGAGCTGTGTGATTTATTAAGTAGATTTT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAATTGCTTGTGAAGTCTACAGAGCTGTGTGATTTATTAAGTAGATTTT  200

seq1  ATATTTCTAACAGGGAGGATTAAAAAGACAAGCTCTACTGCTCCGATCAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATATTTCTAACAGGGAGGATTAAAAAGACAAGCTCTACTGCTCCGATCAG  250

seq1  CACATATGCTGTGGATGTAATTGTTTCTCCAGATTTTTAGCTGGTGTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACATATGCTGTGGATGTAATTGTTTCTCCAGATTTTTAGCTGGTGTGTT  300

seq1  TTTCTGTTAGCAGGATAGGCCAGCTCCTGATTTTATTTTTTTTTTAAAAC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCTGTTAGCAGGATAGGCCAGCTCCTGATTTTATTTTTTTTTTAAAAC  350

seq1  CACACATTCTGGAGATCCAGGCATTAATCAGTTTGCAGAGAGCTGCCAAT  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CACACATTCTGGAGATCCAGGCATTAATCAGTTTGCAGAGAGCTGCCAAT  400

seq1  TCCTATCTTCCAGTCTCTTGCCACCAGCAAAATCTCAAACTACGCCTCAC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCTATCTTCCAGTCTCTTGCCACCAGCAAAATCTCAAACTACGCCTCAC  450

seq1  TCTTCTGCATCTTCTATCTTGAAGGGGGTGTACTATCTTGGGGGTGCAGC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCTGCATCTTCTATCTTGAAGGGGGTGTACTATCTTGGGGGTGCAGC  500

seq1  TCTTCGGGACCTTCAACTCTAACATCGCTTGCTTTCTCCAGCTTTTCTGA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTCGGGACCTTCAACTCTAACATCGCTTGCTTTCTCCAGCTTTTCTGA  550

seq1  ATTAAGAGCAAACACCTCAGCTGCTTCCCAATTCTCTTTGTTACTAGATA  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTAAGAGCAAACACCTCAGCTGCTTCCCAATTCTCTTTGTTACTAGATA  600

seq1  ATTCACAAAGCTGGTAGGAAAAATTTCAGCATTGAGTTCAGACATAAACT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTCACAAAGCTGGTAGGAAAAATTTCAGCATTGAGTTCAGACATAAACT  650

seq1  GCTACATCTTCAGTAGAAACTTGCCACAAAATGTTATCACCTTTATTTAT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTACATCTTCAGTAGAAACTTGCCACAAAATGTTATCACCTTTATTTAT  700

seq1  TTTCCCTGACAATGAGAAAAGGGAAGGAGATTTGTATGCTGGGGAATCTG  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTCCCTGACAATGAGAAAAGGGAAGGAGATTTGTATGCTGGGGAATCTG  750

seq1  CTTCGCTGACTGGAGAGGAGGCGGCTTCTGCTTTGCCTAACTTCTCTCCA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTCGCTGACTGGAGAGGAGGCGGCTTCTGCTTTGCCTAACTTCTCTCCA  800

seq1  GAAGATTTAATCAGTGTGCGCCGTCAAGAAAGAAGGATGGTCTCGCCTCC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGATTTAATCAGTGTGCGCCGTCAAGAAAGAAGGATGGTCTCGCCTCC  850

seq1  TGAAGATGCTTTGTCTGAAATGATAAACACAGTTAAGGTGACAGCAGGCC  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAGATGCTTTGTCTGAAATGATAAACACAGTTAAGGTGACAGCAGGCC  900

seq1  CGCGTGCAAAGTGAGGGAACTCTTGTTTATGACTGGAATATACAAAGACA  950
      ||||||||||||||||||||||||||||||||||||||||||| ||||||
seq2  CGCGTGCAAAGTGAGGGAACTCTTGTTTATGACTGGAATATAC-AAGACA  949

seq1  GATTTACCAGGGGCTTTGTGCCTTTTTTTTCTCCTTCCCTAAACTTCCTG  1000
      || ||||||||||| ||||||| ||||||||||  ||||| |||||||||
seq2  GA-TTACCAGGGGC-TTGTGCC-TTTTTTTCTC--TCCCT-AACTTCCTG  993

seq1  ATTCAGCAGATGGTGCTGGGGCTGCAACTATGCTGCTCTGCGTAGAAACC  1050
      ||||||||||| ||||| ||||||| |||||||||||||||||||||| |
seq2  ATTCAGCAGAT-GTGCT-GGGCTGC-ACTATGCTGCTCTGCGTAGAAATC  1040

seq1  CAGCCAAGCCGAATGATTCTTCACTCATAGGTGCTTCTAGGTAGTAATTC  1100
      ||||  |||   ||||||| ||||||||| ||||||||||||||| ||||
seq2  CAGC--AGC--GATGATTC-TCACTCATA-GTGCTTCTAGGTAGT-ATTC  1083

seq1  TTTGGTAGCAGTAGGAGTCCAGGCAGGTCTCAGT  1134
      ||  ||||||||| |||| || ||| ||||||||
seq2  TT--GTAGCAGTA-GAGT-CAAGCAAGTCTCAGT  1113