BAC Information

Click to search

BAC

Clone NameB6Ng01-346G10
Chromosome2 (Build37)
Map Location 178,427,616 - 178,522,005
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100039233, LOC626802, LOC329575, LOC433515, LOC665205, OTTMUSG00000016327, LOC100039263, LOC626848, 2810021G02Rik, Phactr3, Sycp2, Ppp1r3d, 9030418K01Rik, Cdh26
Downstream geneLOC100039368, LOC665264, LOC100043168, LOC100039413, Cdh4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-346G10.bB6Ng01-346G10.g
ACCGA128310GA128311
length1,132298
definitionB6Ng01-346G10.b B6Ng01-346G10.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(178,427,616 - 178,428,746)(178,521,708 - 178,522,005)
sequence
gaattcaggccgagccaaaggttgtcattgctcatcctcccacggtaacc
aacctgtggaataaagtctcttacatacctctcacacgttccctagatcg
agatctttctctcacacagcgccaaggactcacacaccattccacctgga
gctgtttttttgtatcaagattgctatgcttgttcctaaacctgccgatg
ccagcagcgcttgctgatgtaattacatcctgtagctaaatattactgaa
agcaacagcatccaagcgaaatggagataggctgctgtttctggggaaaa
aaaaaacactgggatttggggaaagatgctgaagaggcaaggtactaaaa
tttttcctgtgagttttgtcttagactgaaatcaaaaggtttacagggga
aagaggttgacatctggttgatggcaggacatttgccacatcaacccaca
tgcatgtccctgggttgggttaaatgttccttcctcatgggtgtgggtgg
atagaacccaaggcacagggcaaatgctagcagatgagccactgaatctg
tgcttagtctaggacacaagccatcttcaggggcaagcctacagagtctg
acgttgagacacaggccatcctcagaaatgagcctacaacgtctgatgag
aatgtagttgctgagattttagagatccagtcaggaaccacttgtagctt
gaaggcaacggtgtgttggtagcatgtcagaagcaccttagtcagggaga
cctttattttgagtcgtgctttagagggtacagttcaccgtggcttcacc
tatggtagcaggagcattgtcatggctactttatacctctgcagatcaaa
gtatagaaagacccagattcaggagcagtgctgggcaaaaaccctcctca
gatacacctctgccagtcaggccccagcaatcccccaaagcagtgccatc
ctctgggggccagatagccagctttgggcaacatttcagatccaggatca
taacagccagtaatagtatattcatcattggagtgtttgggaaagaaacg
aggagctatccgtgccagacgtagcactctagtaccaccttacctccttc
tatttaaggagaagagtcatagccaccatctc
ttggagtcggtgtgaatgccagctactcgctgacttgatgtgaaccagct
acttggaaggaggaggaggagcagtaggaggagggggagaaagaggaaga
ggaggaggaggaggaggaagagaaaagaagcatcatttgtattcccaccc
ataacatggtgtgggctatggagtgcaccctgcacacactggtagacaca
cacacctttaggacctctggtgggatcaaaccaaaacgaagaggtaagga
tgaaagtgaagggttagggttagggttagggttagggttagggttagg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_178427616_178428746
seq2: B6Ng01-346G10.b_44_1175

seq1  GAATTCAGGCCGAGCCAAAGGTTGTCATTGCTCATCCTCCCACGGTAACC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCAGGCCGAGCCAAAGGTTGTCATTGCTCATCCTCCCACGGTAACC  50

seq1  AACCTGTGGAATAAAGTCTCTTACATACCTCTCACACGTTCCCTAGATCG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCTGTGGAATAAAGTCTCTTACATACCTCTCACACGTTCCCTAGATCG  100

seq1  AGATCTTTCTCTCACACAGCGCCAAGGACTCACACACCATTCCACCTGGA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGATCTTTCTCTCACACAGCGCCAAGGACTCACACACCATTCCACCTGGA  150

seq1  GCTGTTTTTTTGTATCAAGATTGCTATGCTTGTTCCTAAACCTGCCGATG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCTGTTTTTTTGTATCAAGATTGCTATGCTTGTTCCTAAACCTGCCGATG  200

seq1  CCAGCAGCGCTTGCTGATGTAATTACATCCTGTAGCTAAATATTACTGAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAGCAGCGCTTGCTGATGTAATTACATCCTGTAGCTAAATATTACTGAA  250

seq1  AGCAACAGCATCCAAGCGAAATGGAGATAGGCTGCTGTTTCTGGGGAAAA  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAACAGCATCCAAGCGAAATGGAGATAGGCTGCTGTTTCTGGGGAAAA  300

seq1  AAAAAACACTGGGATTTGGGGAAAGATGCTGAAGAGGCAAGGTACTAAAA  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAACACTGGGATTTGGGGAAAGATGCTGAAGAGGCAAGGTACTAAAA  350

seq1  TTTTTCCTGTGAGTTTTGTCTTAGACTGAAATCAAAAGGTTTACAGGGGA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCCTGTGAGTTTTGTCTTAGACTGAAATCAAAAGGTTTACAGGGGA  400

seq1  AAGAGGTTGACATCTGGTTGATGGCAGGACATTTGCCACATCAACCCACA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGAGGTTGACATCTGGTTGATGGCAGGACATTTGCCACATCAACCCACA  450

seq1  TGCATGTCCCTGGGTTGGGTTAAATGTTCCTTCCTCATGGGTGTGGGTGG  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCATGTCCCTGGGTTGGGTTAAATGTTCCTTCCTCATGGGTGTGGGTGG  500

seq1  ATAGAACCCAAGGCACAGGGCAAATGCTAGCAGATGAGCCACTGAATCTG  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAGAACCCAAGGCACAGGGCAAATGCTAGCAGATGAGCCACTGAATCTG  550

seq1  TGCTTAGTCTAGGACACAAGCCATCTTCAGGGGCAAGCCTACAGAGTCTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTTAGTCTAGGACACAAGCCATCTTCAGGGGCAAGCCTACAGAGTCTG  600

seq1  ACGTTGAGACACAGGCCATCCTCAGAAATGAGCCTACAACGTCTGATGAG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACGTTGAGACACAGGCCATCCTCAGAAATGAGCCTACAACGTCTGATGAG  650

seq1  AATGTAGTTGCTGAGATTTTAGAGATCCAGTCAGGAACCACTTGTAGCTT  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGTAGTTGCTGAGATTTTAGAGATCCAGTCAGGAACCACTTGTAGCTT  700

seq1  GAAGGCAACGGTGTGTTGGTAGCATGTCAGAAGCACCTTAGTCAGGGAGA  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAACGGTGTGTTGGTAGCATGTCAGAAGCACCTTAGTCAGGGAGA  750

seq1  CCTTTATTTTGAGTCGTGCTTTAGAGGGTACAGTTCACCGTGGCTTCACC  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTTTATTTTGAGTCGTGCTTTAGAGGGTACAGTTCACCGTGGCTTCACC  800

seq1  TATGGTAGCAGGAGCATTGTCATGGCTACTTTATACCTCTGCAGATCAAA  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATGGTAGCAGGAGCATTGTCATGGCTACTTTATACCTCTGCAGATCAAA  850

seq1  GTATAGAAAGACCCAGATTCAGGAGCAGTGCTGGGCAAAAACCCTCCTCA  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTATAGAAAGACCCAGATTCAGGAGCAGTGCTGGGCAAAAACCCTCCTCA  900

seq1  GATACACCTCTGCCAGTCAGGCCCCAGCAATCCCCCAAAGCAGTGCCATC  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACACCTCTGCCAGTCAGGCCCCAGCAATCCCCCAAAGCAGTGCCATC  950

seq1  CTCTGGGGGCCAGATAGCCAGCTTTGGGCAACATTTCAGATCCA-GATCA  999
      |||||||||||||||||||||||||||||||||||||||||||| |||||
seq2  CTCTGGGGGCCAGATAGCCAGCTTTGGGCAACATTTCAGATCCAGGATCA  1000

seq1  TAACAGCCAGTAATAGTATATTCATCATTGGAGTGTTTGGGAAAGAAACG  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAACAGCCAGTAATAGTATATTCATCATTGGAGTGTTTGGGAAAGAAACG  1050

seq1  A-GAGCTATCCGTGGCAGACGTAGCAACCTCTAGTA-CACACTACCTCC-  1096
      | |||||||||||| |||||||||||  |||||||| |||  ||||||| 
seq2  AGGAGCTATCCGTGCCAGACGTAGCA--CTCTAGTACCACCTTACCTCCT  1098

seq1  TCTATGTTAGGAGAAGAGTCATAGCCACCCATCTC  1131
      ||||| | ||||||||||||||||||| |||||||
seq2  TCTATTTAAGGAGAAGAGTCATAGCCA-CCATCTC  1132

seq1: chr2_178521708_178522005
seq2: B6Ng01-346G10.g_76_373 (reverse)

seq1  CCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTTCACTTTCATC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTAACCCTAACCCTAACCCTAACCCTAACCCTAACCCTTCACTTTCATC  50

seq1  CTTACCTCTTCGTTTTGGTTTGATCCCACCAGAGGTCCTAAAGGTGTGTG  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACCTCTTCGTTTTGGTTTGATCCCACCAGAGGTCCTAAAGGTGTGTG  100

seq1  TGTCTACCAGTGTGTGCAGGGTGCACTCCATAGCCCACACCATGTTATGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTACCAGTGTGTGCAGGGTGCACTCCATAGCCCACACCATGTTATGG  150

seq1  GTGGGAATACAACTGATGCTTCTTTTCTCTTCCTCCTCCTCCTCCTCCTC  200
      |||||||||||| |||||||||||||||||||||||||||||||||||||
seq2  GTGGGAATACAAATGATGCTTCTTTTCTCTTCCTCCTCCTCCTCCTCCTC  200

seq1  TTCCTCTTTCTCCCCCTCCTCCTACTGCTCCTCCTCCTCCTTCCAAGTAG  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTCTTTCTCCCCCTCCTCCTACTGCTCCTCCTCCTCCTTCCAAGTAG  250

seq1  CTGGTTCACATCAAGTCAGCGAGTAGCTGGCATTCACACCGACTCCAA  298
      ||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTTCACATCAAGTCAGCGAGTAGCTGGCATTCACACCGACTCCAA  298