BAC Information

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BAC

Clone NameB6Ng01-347B02
Chromosome2 (Build37)
Map Location 37,225,753 - 37,369,682
singlet/doubletdoublet
Overlap geneRc3h2, Zbtb6, Zbtb26, Rabgap1
Upstream geneOlfr338, LOC675440, Olfr339, Olfr340, Olfr341, Olfr342, Olfr343-ps1, Olfr344, Olfr345, Olfr346, Olfr347, Olfr348, Olfr50, Rpl18p, Olfr3, Olfr349-ps1, Olfr350, Olfr351, Olfr352, Olfr353, Olfr354, Olfr355, Olfr356, Olfr357, Olfr358, Olfr359-ps1, Olfr360, Olfr361, Olfr362, Olfr364-ps1, Olfr365, Olfr366, Olfr367, Olfr368, Pdcl
Downstream geneGpr21, 6430510M02Rik, Strbp, LOC639491, Dennd1a, LOC100040947, Lhx2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-347B02.bB6Ng01-347B02.g
ACCGA128785GA128786
length1,1241,121
definitionB6Ng01-347B02.b B6Ng01-347B02.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(37,225,753 - 37,226,887)(37,368,554 - 37,369,682)
sequence
gaattcactctttgctattcactatcatcacaaccctcattgttccatct
ctgccctccccccatatacaggccttataagtcctagccttcccccattt
aatcctattcctatagcacaaagggaaacattacaatttggaaattcaaa
ttgaaataaatggaatagaatttattcccatatatattccccatttcatt
gtacagaattattttatagttttaaatagaagctgagtatatgccttaaa
aatgagcattaaatccatcttagagatggtgcctgcgttttacatgatgg
gtgtacaccatctttaatttcatttacatttcaatcgaacaatagatttg
caaagaaaatgtctaatacagacgtaaaaatattcacactaagcttcaca
atcggttgtacaattgacaaacaggcctcttttcccaaactttccagcta
agcaaatttataaaatgtaatcaatgcaacaagaaaaacatttctctttc
acttccagggaaaagaatatgcaataaacagtataaatgcagacggcagt
tgctgcaagctaaccacgatactcccaagtggctgtacagtgggtatgtg
cagtacaaataaaagccacatgtgttgtatcacaactacagtataattgc
ttgcccagctaagagaatgcatgcacttccatgccttgggttataaagtg
aggcctaatttttgacaggttgatggaatatgtgcaaatgaccttggctc
ttggcagtactaagtgcagccagtgtctgttttccactggtttgggggat
atttttaaatttttatgtaagagaaaaaaaaataattgccagtttcagac
ttgggggaataactccccttagagtaaaaataagtctccactcaaatgtg
gggtgttctgatctgtggtttgactccttgtactcccttgccagcaaagg
gatacaaagaaatagctagtgtaaaggagttactagcaaacttaatctct
agaaaacgggatactccttgagcatgttcatttgtgttctgcttgcagaa
ggggcccttcagtagagagtacagtaagtgatcccatgtactcttatcac
taaacaaagaacagttctagacac
gaattcagttgttatgtacttttttctaaaactctcatgaaattttgttt
atagatgattgaaacagagacaatccttttttttttttttttttttaaaa
aaaacctgccaaatacaataaaaattgtttttaggtttcaaaagctttta
aatgaagctgcaataactaggtatgcattcctattcttaaagttcaggac
ctagaaggaagtgctaaaagtcttgcaatagcctaaggtttcagagcact
tcaaatttcctatcgtggtggtttaactgataagtcaacataatccaaac
caaatcaaaccaagacagacaaaaccatcaccaccaccaccaggaaacag
aaaacaagtcagaaacagttctgatcccaagcttttagaccaggctaaat
gacataaaacttctgtgggttaaacaaaaggaaacaaaacaaaaaaacaa
acccactaacaacttcaaaatggtcaagacaatatatcaacattcttgga
atgcaggaaaccctggaacttcttagccatgatttgacagatggaatgga
aatgttttcacaaagatatgtgggggtggtcacatagctttaatttcctg
ttgccttataaggtcatgcctagcagcacctgaaattcctactaatgtta
atgaggcctccccagcaccctggcccctgacaatgatgtccactaagcct
ggtggtccctactcacccctcaaaggtttaaataccctttgctccccaca
ctaaaatgagctgtctcactgaagctgccagggagtcagttctcatggtg
cttgcctgaggtttcttttgctcctggctgttctggcatcctctcctagg
atctatggttgtgatcacaggctgatcatgagatatttcagggaggagga
gcctgaatgacatcttagtatccatagaaaattgggtcccaggacctcta
ttgaatataaaattcatggatgctaaatccctaataataaatggtacagc
aggaaaatgagaatatggtagaatgcttgcctaccttgacagatcctgag
tcatctcttagcactgaggaggagagtattttatatatgcactcctgtta
cacatcatctttgtaattact
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_37225753_37226887
seq2: B6Ng01-347B02.b_49_1172

seq1  GAATTCACTCTTTGCTATTCACTATCATCACAACCCTCATTGTTCCATCT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTCTTTGCTATTCACTATCATCACAACCCTCATTGTTCCATCT  50

seq1  CTGCCCTCCCCCCATATACAGGCCTTATAAGTCCTAGCCTTCCCCCATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGCCCTCCCCCCATATACAGGCCTTATAAGTCCTAGCCTTCCCCCATTT  100

seq1  AATCCTATTCCTATAGCACAAAGGGAAACATTACAATTTGGAAATTCAAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCCTATTCCTATAGCACAAAGGGAAACATTACAATTTGGAAATTCAAA  150

seq1  TTGAAATAAATGGAATAGAATTTATTCCCATATATATTCCCCATTTCATT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGAAATAAATGGAATAGAATTTATTCCCATATATATTCCCCATTTCATT  200

seq1  GTACAGAATTATTTTATAGTTTTAAATAGAAGCTGAGTATATGCCTTAAA  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTACAGAATTATTTTATAGTTTTAAATAGAAGCTGAGTATATGCCTTAAA  250

seq1  AATGAGCATTAAATCCATCTTAGAGATGGTGCCTGCGTTTTACATGATGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATGAGCATTAAATCCATCTTAGAGATGGTGCCTGCGTTTTACATGATGG  300

seq1  GTGTACACCATCTTTAATTTCATTTACATTTCAATCGAACAATAGATTTG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTACACCATCTTTAATTTCATTTACATTTCAATCGAACAATAGATTTG  350

seq1  CAAAGAAAATGTCTAATACAGACGTAAAAATATTCACACTAAGCTTCACA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAAGAAAATGTCTAATACAGACGTAAAAATATTCACACTAAGCTTCACA  400

seq1  ATCGGTTGTACAATTGACAAACAGGCCTCTTTTCCCAAACTTTCCAGCTA  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCGGTTGTACAATTGACAAACAGGCCTCTTTTCCCAAACTTTCCAGCTA  450

seq1  AGCAAATTTATAAAATGTAATCAATGCAACAAGAAAAACATTTCTCTTTC  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCAAATTTATAAAATGTAATCAATGCAACAAGAAAAACATTTCTCTTTC  500

seq1  ACTTCCAGGGAAAAGAATATGCAATAAACAGTATAAATGCAGACGGCAGT  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCCAGGGAAAAGAATATGCAATAAACAGTATAAATGCAGACGGCAGT  550

seq1  TGCTGCAAGCTAACCACGATACTCCCAAGTGGCTGTACAGTGGGTATGTG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCTGCAAGCTAACCACGATACTCCCAAGTGGCTGTACAGTGGGTATGTG  600

seq1  CAGTACAAATAAAAGCCACATGTGTTGTATCACAACTACAGTATAATTGC  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTACAAATAAAAGCCACATGTGTTGTATCACAACTACAGTATAATTGC  650

seq1  TTGCCCAGCTAAGAGAATGCATGCACTTCCATGCCTTGGGTTATAAAGTG  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGCCCAGCTAAGAGAATGCATGCACTTCCATGCCTTGGGTTATAAAGTG  700

seq1  AGGCCTAATTTTTGACAGGTTGATGGAATATGTGCAAATGACCTTGGCTC  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGCCTAATTTTTGACAGGTTGATGGAATATGTGCAAATGACCTTGGCTC  750

seq1  TTGGCAGTACTAAGTGCAGCCAGTGTCTGTTTTCCACTGGTTTGGGGGAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGCAGTACTAAGTGCAGCCAGTGTCTGTTTTCCACTGGTTTGGGGGAT  800

seq1  ATTTTTAAATTTTTATGTAAGAGAAAAAAAAATAATTGCCAGTTTCAGAC  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTTTAAATTTTTATGTAAGAGAAAAAAAAATAATTGCCAGTTTCAGAC  850

seq1  TTGGGGGAATAACTCCCCTTAGAGTAAAAATAAGTCTCCACTCAAATGTG  900
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGGGGGAATAACTCCCCTTAGAGTAAAAATAAGTCTCCACTCAAATGTG  900

seq1  GGGTGTTCTGATCTGTGGTTTGACTCCTTGTACTCCCTTGCCAGCAAAGG  950
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGTGTTCTGATCTGTGGTTTGACTCCTTGTACTCCCTTGCCAGCAAAGG  950

seq1  GATACAAAGAAATAGCTAGTGTAAAGGAGTTACTAGCAAACTTAATCTCT  1000
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GATACAAAGAAATAGCTAGTGTAAAGGAGTTACTAGCAAACTTAATCTCT  1000

seq1  AGAAAACGGGATACTCCTTGAGCATGTTCATTTGTGTTCTGCTTGCAGAA  1050
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGAAAACGGGATACTCCTTGAGCATGTTCATTTGTGTTCTGCTTGCAGAA  1050

seq1  GGGGCCCTTCAGTAGAAGGAGTTAACAGTAAGTGATCCCATTGGTACTCT  1100
      ||||||||||||||||  ||||  |||||||||||||||||  |||||||
seq2  GGGGCCCTTCAGTAGA--GAGT--ACAGTAAGTGATCCCAT--GTACTCT  1094

seq1  TTATTCACTAAAACAAAAGAACAGTTCTAAGACAC  1135
      |   ||||||||   ||||||||||||| ||||||
seq2  T--ATCACTAAA--CAAAGAACAGTTCT-AGACAC  1124

seq1: chr2_37368554_37369682
seq2: B6Ng01-347B02.g_65_1185 (reverse)

seq1  AGTAATTTACAAAGAATTGATGTGT-ACAGGAGTGCCATATAT-AAATAC  48
      ||||| |||||||||  |||||||| ||||||||| ||||||| ||||||
seq2  AGTAA-TTACAAAGA--TGATGTGTAACAGGAGTG-CATATATAAAATAC  46

seq1  TTCTTCCTCCCTCAGTGCT-AGAGATTGAACTCAGGATCTTGGTCAAGGT  97
      |   |||| |||||||||| ||||||   |||||||||||  ||||||||
seq2  T--CTCCT-CCTCAGTGCTAAGAGAT--GACTCAGGATCT--GTCAAGGT  89

seq1  AGGCAAGCATTCTACCATATTCCTCATTTTCCTGCTGTACCATTTTATAT  147
      ||||||||||||||||||||| |||||||||||||||||||||||  |||
seq2  AGGCAAGCATTCTACCATATT-CTCATTTTCCTGCTGTACCATTTATTAT  138

seq1  TAGGGATTTAGCATCCATGAATTTTATATTCAATAGAGGTCCTGGGA-CC  196
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TAGGGATTTAGCATCCATGAATTTTATATTCAATAGAGGTCCTGGGACCC  188

seq1  AATTTTCTATGGATACTAAGATGTCATTCAGGCTCCTCCTCCCTGAAATA  246
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATTTTCTATGGATACTAAGATGTCATTCAGGCTCCTCCTCCCTGAAATA  238

seq1  TCTCATGATCAGCCTGTGATCACAACCATAGATCCTAGGAGAGGATGCCA  296
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTCATGATCAGCCTGTGATCACAACCATAGATCCTAGGAGAGGATGCCA  288

seq1  GAACAGCCAGGAGCAAAAGAAACCTCAGGCAAGCACCATGAGAACTGACT  346
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAACAGCCAGGAGCAAAAGAAACCTCAGGCAAGCACCATGAGAACTGACT  338

seq1  CCCTGGCAGCTTCAGTGAGACAGCTCATTTTAGTGTGGGGAGCAAAGGGT  396
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCCTGGCAGCTTCAGTGAGACAGCTCATTTTAGTGTGGGGAGCAAAGGGT  388

seq1  ATTTAAACCTTTGAGGGGTGAGTAGGGACCACCAGGCTTAGTGGACATCA  446
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTAAACCTTTGAGGGGTGAGTAGGGACCACCAGGCTTAGTGGACATCA  438

seq1  TTGTCAGGGGCCAGGGTGCTGGGGAGGCCTCATTAACATTAGTAGGAATT  496
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTCAGGGGCCAGGGTGCTGGGGAGGCCTCATTAACATTAGTAGGAATT  488

seq1  TCAGGTGCTGCTAGGCATGACCTTATAAGGCAACAGGAAATTAAAGCTAT  546
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGGTGCTGCTAGGCATGACCTTATAAGGCAACAGGAAATTAAAGCTAT  538

seq1  GTGACCACCCCCACATATCTTTGTGAAAACATTTCCATTCCATCTGTCAA  596
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGACCACCCCCACATATCTTTGTGAAAACATTTCCATTCCATCTGTCAA  588

seq1  ATCATGGCTAAGAAGTTCCAGGGTTTCCTGCATTCCAAGAATGTTGATAT  646
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCATGGCTAAGAAGTTCCAGGGTTTCCTGCATTCCAAGAATGTTGATAT  638

seq1  ATTGTCTTGACCATTTTGAAGTTGTTAGTGGGTTTGTTTTTTTGTTTTGT  696
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTGTCTTGACCATTTTGAAGTTGTTAGTGGGTTTGTTTTTTTGTTTTGT  688

seq1  TTCCTTTTGTTTAACCCACAGAAGTTTTATGTCATTTAGCCTGGTCTAAA  746
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTGTTTAACCCACAGAAGTTTTATGTCATTTAGCCTGGTCTAAA  738

seq1  AGCTTGGGATCAGAACTGTTTCTGACTTGTTTTCTGTTTCCTGGTGGTGG  796
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGCTTGGGATCAGAACTGTTTCTGACTTGTTTTCTGTTTCCTGGTGGTGG  788

seq1  TGGTGATGGTTTTGTCTGTCTTGGTTTGATTTGGTTTGGATTATGTTGAC  846
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGGTGATGGTTTTGTCTGTCTTGGTTTGATTTGGTTTGGATTATGTTGAC  838

seq1  TTATCAGTTAAACCACCACGATAGGAAATTTGAAGTGCTCTGAAACCTTA  896
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTATCAGTTAAACCACCACGATAGGAAATTTGAAGTGCTCTGAAACCTTA  888

seq1  GGCTATTGCAAGACTTTTAGCACTTCCTTCTAGGTCCTGAACTTTAAGAA  946
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGCTATTGCAAGACTTTTAGCACTTCCTTCTAGGTCCTGAACTTTAAGAA  938

seq1  TAGGAATGCATACCTAGTTATTGCAGCTTCATTTAAAAGCTTTTGAAACC  996
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGAATGCATACCTAGTTATTGCAGCTTCATTTAAAAGCTTTTGAAACC  988

seq1  TAAAAACAATTTTTATTGTATTTGGCAGGTTTTTTTTAAAAAAAAAAAAA  1046
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAAAACAATTTTTATTGTATTTGGCAGGTTTTTTTTAAAAAAAAAAAAA  1038

seq1  AAAAAAAGGATTGTCTCTGTTTCAATCATCTATAAACAAAATTTCATGAG  1096
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAAAAAGGATTGTCTCTGTTTCAATCATCTATAAACAAAATTTCATGAG  1088

seq1  AGTTTTAGAAAAAAGTACATAACAACTGAATTC  1129
      |||||||||||||||||||||||||||||||||
seq2  AGTTTTAGAAAAAAGTACATAACAACTGAATTC  1121