BAC Information

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BAC

Clone NameB6Ng01-349L14
Chromosome2 (Build37)
Map Location 43,499,292 - 43,659,069
singlet/doubletdoublet
Overlap geneKynu, Arhgap15
Upstream geneLrp1b, LOC100041228, LOC100041245
Downstream geneGtdc1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-349L14.bB6Ng01-349L14.g
ACCGA130631GA130632
length8261,217
definitionB6Ng01-349L14.b B6Ng01-349L14.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(43,499,292 - 43,500,117)(43,657,860 - 43,659,069)
sequence
gaattctcaggaaaaataaaaattctttcggatgggttttttttttttaa
atgttacaattcatttgggaaggtgtcacataaacaatcaaacttgattt
aaatgacagacaacagtaagttataatcggtgtcccaaagcaacttgtaa
ttgttggctgatttcatcacagaagtaaaaatgtatgtgactaactcggg
gtttcttggtgtaggctcaggccaggcgagggagaacttatagctgcagt
ttctctgtcaagtgggatgcaatattaactacgtgattacctttattctt
ttacctgaaattgttgtctataagagagattcacttcacaaattccatcc
ataaggaggcataaaaagaagaaggaagtgcttaaatgacatttcttaag
gttatttcaaggaatccctttctttttattcccttccctggttctttcat
ggaaatgttattggcttaacattttaaacctgcctcagtatcatcacatt
gccctttatctcaattctataatatttcataaattataaacaatagtata
accagatttattttaagttctcagttctgaagccacactgaacaagttag
ttccatctgtattcagacttagtcctcaagttataactgtatgaggtttg
aaagcagacaagtttctttcagagaatttcatttgtgcaatcatgataca
caacttactctgttttcatttataaattcttaaaacttaagataggccat
tgtgaaattagtgtccttatcagtttgcaaggtgtgtgtgtgtcacatat
aagaatatgtgtctcgtgtgtgtgtg

gaattctataatattggagtacttattttagtaattattaaacatttatt
tagaaaacatattcgaaataaacctaagatttaaatgaatacttttaaac
taatcaataattaatcaatttaatattttaataccttagaaataaattaa
caactgatttaatgtcttgatggttcatgaatgtataaaattaaacacca
tactaggcctgtttataagagaaatagatattgttttgatattatttgtg
agaataatacatagctgctgccttcaggagtagagtctttatgagcgtta
gatagacatgcacagtatggtatgatatattttatcatctcctataacat
cttttcctgtgtcctctgtagcagtttgcatttttaacatagaaggttct
caaatatttataacagtacattacactcttaaaaagtttaagttccttaa
agacattgttaatgtaagctaccagtattattatttatcagaaggaccta
aaattgagttattttaataataagtaagtaccaattaatttaaacacaac
aataagaaatgtattgcctattaacatgcaattttcaatgaaaatgactt
gtttcaaaaacaattctctgatgaagaaagggtttatagttctgcaaatg
tcttcaatgtctaccataaaaggaaagacaagggcttttcagtgctgata
tctgcacctaacctactgtgacagtacatcatggaacctctgtggcattt
caccctacgcccatgtgcataaaagggtcaaggcacagcttagaaaaact
atgaagataaggttaaccttatggacctgagaagctgaagtgcctccatt
cctccttagcttgtccttgacaactactgaagggcctgtgagatagtggg
agataaatttgagaactgcaaacagatgagtggacaaaacagtagacaat
gggaagtaagatgtagaaaatgcccaaagccctttctctgtcaccaaaac
ttctctggttgttttatgctgtctatcctgagctttggcatgagtgatga
tggcctttctaaaccaataggaattgtttctgcctgggtctgctcaatta
gttccttagaaaaccacctctcactttaatggagcagttgatgtagggaa
tgtccggtcaacaaaatcaagcaaggaagaaggagactgacctataattc
tttagttcaaccctatt
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_43499292_43500117
seq2: B6Ng01-349L14.b_48_873

seq1  GAATTCTCAGGAAAAATAAAAATTCTTTCGGATGGGAATTTTTTTTTTAA  50
      ||||||||||||||||||||||||||||||||||||  ||||||||||||
seq2  GAATTCTCAGGAAAAATAAAAATTCTTTCGGATGGGTTTTTTTTTTTTAA  50

seq1  ATGTTACAATTCATTTGGGAAGGTGTCACATAAACAATCAAACTTGATTT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGTTACAATTCATTTGGGAAGGTGTCACATAAACAATCAAACTTGATTT  100

seq1  AAATGACAGACAACAGTAAGTTATAATCGGTGTCCCAAAGCAACTTGTAA  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAATGACAGACAACAGTAAGTTATAATCGGTGTCCCAAAGCAACTTGTAA  150

seq1  TTGTTGGCTGATTTCATCACAGAAGTAAAAATGTATGTGACTAACTCGGG  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTTGGCTGATTTCATCACAGAAGTAAAAATGTATGTGACTAACTCGGG  200

seq1  GTTTCTTGGTGTAGGCTCAGGCCAGGCGAGGGAGAACTTATAGCTGCAGT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTCTTGGTGTAGGCTCAGGCCAGGCGAGGGAGAACTTATAGCTGCAGT  250

seq1  TTCTCTGTCAAGTGGGATGCAATATTAACTACGTGATTACCTTTATTCTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCTCTGTCAAGTGGGATGCAATATTAACTACGTGATTACCTTTATTCTT  300

seq1  TTACCTGAAATTGTTGTCTATAAGAGAGATTCACTTCACAAATTCCATCC  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTACCTGAAATTGTTGTCTATAAGAGAGATTCACTTCACAAATTCCATCC  350

seq1  ATAAGGAGGCATAAAAAGAAGAAGGAAGTGCTTAAATGACATTTCTTAAG  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATAAGGAGGCATAAAAAGAAGAAGGAAGTGCTTAAATGACATTTCTTAAG  400

seq1  GTTATTTCAAGGAATCCCTTTCTTTTTATTCCCTTCCCTGGTTCTTTCAT  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTATTTCAAGGAATCCCTTTCTTTTTATTCCCTTCCCTGGTTCTTTCAT  450

seq1  GGAAATGTTATTGGCTTAACATTTTAAACCTGCCTCAGTATCATCACATT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAAATGTTATTGGCTTAACATTTTAAACCTGCCTCAGTATCATCACATT  500

seq1  GCCCTTTATCTCAATTCTATAATATTTCATAAATTATAAACAATAGTATA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GCCCTTTATCTCAATTCTATAATATTTCATAAATTATAAACAATAGTATA  550

seq1  ACCAGATTTATTTTAAGTTCTCAGTTCTGAAGCCACACTGAACAAGTTAG  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCAGATTTATTTTAAGTTCTCAGTTCTGAAGCCACACTGAACAAGTTAG  600

seq1  TTCCATCTGTATTCAGACTTAGTCCTCAAGTTATAACTGTATGAGGTTTG  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCATCTGTATTCAGACTTAGTCCTCAAGTTATAACTGTATGAGGTTTG  650

seq1  AAAGCAGACAAGTTTCTTTCAGAGAATTTCATTTGTGCAATCATGATACA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAAGCAGACAAGTTTCTTTCAGAGAATTTCATTTGTGCAATCATGATACA  700

seq1  CAACTTACTCTGTTTTCATTTATAAATTCTTAAAACTTAAGATAGGCCAT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACTTACTCTGTTTTCATTTATAAATTCTTAAAACTTAAGATAGGCCAT  750

seq1  TGTGAAATTAGTGTCCTTATCAGTTTGCAAGGTGTGTGTGTGTCACATAT  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGAAATTAGTGTCCTTATCAGTTTGCAAGGTGTGTGTGTGTCACATAT  800

seq1  AAGAATATGTGTCTCGTGTGTGTGTG  826
      ||||||||||||||||||||||||||
seq2  AAGAATATGTGTCTCGTGTGTGTGTG  826


seq1: chr2_43657860_43659069
seq2: B6Ng01-349L14.g_69_1285 (reverse)

seq1  AATAGAGTTGAACTAAAAGAATTATA-GTCAAGGTCTCTCTC-TCCTTGG  48
      ||||| |||||||| ||||||||||| ||||  |||||  || |||||| 
seq2  AATAGGGTTGAACT-AAAGAATTATAGGTCA--GTCTCCTTCTTCCTTGC  47

seq1  TTGTATTTTGTTGA-CGGACCATTCCTACATCAACTGCT-CATT-AAGTG  95
      ||| |||||||||| |||||  | ||||||||||||||| |||| |||||
seq2  TTG-ATTTTGTTGACCGGACATTCCCTACATCAACTGCTCCATTAAAGTG  96

seq1  AGTGG-----TTCTAAGG-ACTAATTTGAGCAGGACCCA-GCAG-AACAA  137
      || ||     |||||||| ||||| ||||||| |||||| |||| |||||
seq2  AGAGGTGGTTTTCTAAGGAACTAA-TTGAGCA-GACCCAGGCAGAAACAA  144

seq1  TT-CTATTGGTTTAAGAAAGGCCATCATCACTCATGCCAAAGCTTCAGGA  186
      || |||||||||| ||||||||||||||||||||||||||||| ||||||
seq2  TTCCTATTGGTTT-AGAAAGGCCATCATCACTCATGCCAAAGC-TCAGGA  192

seq1  TAGACAGCATAAAACAACCAGAGAAGTTTTGGTGACAGAGAAAGGGCTTT  236
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGACAGCATAAAACAACCAGAGAAGTTTTGGTGACAGAGAAAGGGCTTT  242

seq1  GGGCATTTTCTACATCTTACTTCCCATTGTCTACTGTTTTGTCCACTCAT  286
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCATTTTCTACATCTTACTTCCCATTGTCTACTGTTTTGTCCACTCAT  292

seq1  CTGTTTGCAGTTCTC-AATTTATCTCCCACTATCTCACAGGCCCTTCAGT  335
      ||||||||||||||| ||||||||||||||||||||||||||||||||||
seq2  CTGTTTGCAGTTCTCAAATTTATCTCCCACTATCTCACAGGCCCTTCAGT  342

seq1  AGTTGTCAAGGACAAGCTAAGGAGGAATGGAGGCACTTCAGCTTCTCAGG  385
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTTGTCAAGGACAAGCTAAGGAGGAATGGAGGCACTTCAGCTTCTCAGG  392

seq1  TCCATAAGGTTAACCTTATCTTCATAGTTTTTCTAAGCTGTGCCTTGACC  435
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCATAAGGTTAACCTTATCTTCATAGTTTTTCTAAGCTGTGCCTTGACC  442

seq1  CTTTTATGCACATGGGCGTAGGGTGAAATGCCACAGAGGTTCCATGATGT  485
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTTATGCACATGGGCGTAGGGTGAAATGCCACAGAGGTTCCATGATGT  492

seq1  ACTGTCACAGTAGGTTAGGTGCAGATATCAGCACTGAAAAGCCCTTGTCT  535
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGTCACAGTAGGTTAGGTGCAGATATCAGCACTGAAAAGCCCTTGTCT  542

seq1  TTCCTTTTATGGTAGACATTGAAGACATTTGCAGAACTATAAACCCTTTC  585
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCCTTTTATGGTAGACATTGAAGACATTTGCAGAACTATAAACCCTTTC  592

seq1  TTCATCAGAGAATTGTTTTTGAAACAAGTCATTTTCATTGAAAATTGCAT  635
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTCATCAGAGAATTGTTTTTGAAACAAGTCATTTTCATTGAAAATTGCAT  642

seq1  GTTAATAGGCAATACATTTCTTATTGTTGTGTTTAAATTAATTGGTACTT  685
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTTAATAGGCAATACATTTCTTATTGTTGTGTTTAAATTAATTGGTACTT  692

seq1  ACTTATTATTAAAATAACTCAATTTTAGGTCCTTCTGATAAATAATAATA  735
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTATTATTAAAATAACTCAATTTTAGGTCCTTCTGATAAATAATAATA  742

seq1  CTGGTAGCTTACATTAACAATGTCTTTAAGGAACTTAAACTTTTTAAGAG  785
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGGTAGCTTACATTAACAATGTCTTTAAGGAACTTAAACTTTTTAAGAG  792

seq1  TGTAATGTACTGTTATAAATATTTGAGAACCTTCTATGTTAAAAATGCAA  835
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTAATGTACTGTTATAAATATTTGAGAACCTTCTATGTTAAAAATGCAA  842

seq1  ACTGCTACAGAGGACACAGGAAAAGATGTTATAGGAGATGATAAAATATA  885
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTGCTACAGAGGACACAGGAAAAGATGTTATAGGAGATGATAAAATATA  892

seq1  TCATACCATACTGTGCATGTCTATCTAACGCTCATAAAGACTCTACTCCT  935
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCATACCATACTGTGCATGTCTATCTAACGCTCATAAAGACTCTACTCCT  942

seq1  GAAGGCAGCAGCTATGTATTATTCTCACAAATAATATCAAAACAATATCT  985
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAAGGCAGCAGCTATGTATTATTCTCACAAATAATATCAAAACAATATCT  992

seq1  ATTTCTCTTATAAACAGGCCTAGTATGGTGTTTAATTTTATACATTCATG  1035
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATTTCTCTTATAAACAGGCCTAGTATGGTGTTTAATTTTATACATTCATG  1042

seq1  AACCATCAAGACATTAAATCAGTTGTTAATTTATTTCTAAGGTATTAAAA  1085
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACCATCAAGACATTAAATCAGTTGTTAATTTATTTCTAAGGTATTAAAA  1092

seq1  TATTAAATTGATTAATTATTGATTAGTTTAAAAGTATTCATTTAAATCTT  1135
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TATTAAATTGATTAATTATTGATTAGTTTAAAAGTATTCATTTAAATCTT  1142

seq1  AGGTTTATTTCGAATATGTTTTCTAAATAAATGTTTAATAATTACTAAAA  1185
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGTTTATTTCGAATATGTTTTCTAAATAAATGTTTAATAATTACTAAAA  1192

seq1  TAAGTACTCCAATATTATAGAATTC  1210
      |||||||||||||||||||||||||
seq2  TAAGTACTCCAATATTATAGAATTC  1217


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