BAC Information

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BAC

Clone NameB6Ng01-350E05
Chromosome2 (Build37)
Map Location 143,517,707 - 143,628,404
singlet/doubletdoublet
Overlap genePcsk2
Upstream geneKif16b, Snrpb2, Otor, LOC668915, LOC668916
Downstream geneBfsp1, LOC100043799, LOC100043534, Dstn, Rrbp1, 4930517K23Rik, LOC627160, EG433481, Snx5, 8430406I07Rik, Ovol2, Ppia-ps2_1789.1, LOC635097, Csrp2bp, LOC100043552, 6330439K17Rik, Polr3f, Rbbp9, Sec23b, Gm561, Dtd1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350E05.bB6Ng01-350E05.g
ACCGA130990GA130991
length1,1361,111
definitionB6Ng01-350E05.b B6Ng01-350E05.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(143,517,707 - 143,518,857)(143,627,288 - 143,628,404)
sequence
gaattcactgtccctcaattaaaattcctaatttctctactgttttggtc
acttctgctacagaacaaaccacctagaataacctttttttttagttact
gtgtcttataattctgtgagatgatggactctactggaaagttctgctgg
tgtctctaaagaaagaaaagaatatgttcagtcagggaaggaggctcagt
caataaagcttttgtacaagtataaggacctgagtccccatccctagcac
acttgtgaaagctgagtgcagcagtgcacacctgtaccccagcactgagg
atcaaggtcaggctgcagagactggcagatccctggagctcactgggagg
tcagcctcactgaatcagtgagggcaggaacagtgagaggtcttgcctca
gagaacaaggcagagagcaactgaggaagacatctgatatctccctctgc
cctctacatgcataaggacacatgtgcaacacacacacacaccagaacat
gtgtcaatatattctactttaagagataatcaagcatacaagaacattaa
aacataatctatcaggctattacttccatttagatcattctttcattggt
aggaaaatgtctttcatcctttacaattctatcaacaatattttctttct
caaccccaagtctgtaaccattctaccaacattttctcttaaccttacta
aagattctttcttataattataataaatatattttactaaaatattattt
cctctggtctcatattaactccttacactcatatttcctttcacagagaa
gagattaccaatgcttctcttaaacaaaaagtattttcagaacatggaat
catgtttttacttctgtctcagaggggagacagtggatcatgacagggac
acatgacagcaggaggaagaggctcacctggccagtcaggaagtgactga
tcacatttcatcaccatgcaagaagctgagagagagataggagtgggact
ataatatgagttgtcaaagtcatctttacttatgtacttctcagtgaggc
ccaccccctagtccacactcccaaatacagcacagctggagatcagcgtt
tatgtgttatgggctgtgggggctatttttatttca
gaattcaggaccagacaactgagtattcagctgcagagcatctaagacca
aagggagacaggagtggataccgtcttcgtctgattaggtctctaagttc
agatgatcatcaggaaaggcaggagtgggaggtgcctgaaaggcacagca
cagccaggcagatttaagtggcatacatcacaggggtgaatcctcacaat
ggcaaactcatcaatgagagtgaaggagagattaccacatgcaacagtgg
gggcgcatctcacaactttaatgtcgagcgcaataaataggaaacagaaa
cacctatgtgatgagattctacctaaacgctagcaccggtataatgaatc
cacagtgagaggaatatgaataatggctgtaggtagggtgtgtgttctga
ctggaagggaacatgaggaacatttccaggtgggtgggatatactatctt
tctatgggtgatagttccccagttgcatatatttgtcaaaactcaaataa
gattctgctatggagcataccttcaagctcagcactctggaggctgagac
aggaggattgtgagttgaagtcagtctatattacattgtgatttcttatc
ttaatactgttccccacaaataaatacttgcattttgggatcttcagggt
atattcatgtattttcatggtgtggaatatagaaattattaatgtcatct
tattaacgaaccagtaaggatagaaagaaattaagtgaagaggtctcttt
actgactaattcgcttgtcacacagggcaagtgggatggagtgtgatatt
tgatatttgagcgaatcaatggattctgtgtggggaactcactcggatgt
cttttaatcacagcctaccttcgtgaggaataaatcaagccgttcccttg
tcccacgaatagagtgaacagtagtgtgtaagcccacattggatcactct
tcgacagtcaacataactaccagcatacactgaatgtgctcaaatctcac
aatacattttctacataggaatatagatataaaagagaacccaatatagt
caatttatatttagtgtaggacagctaaccctctaatgagttagatatgt
gactgctcttg
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_143517707_143518857
seq2: B6Ng01-350E05.b_44_1179

seq1  GAATTCACTGTCCCTCAATTAAAATTCCTAATTTCTCTACTGTTTTGGTC  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAATTCACTGTCCCTCAATTAAAATTCCTAATTTCTCTACTGTTTTGGTC  50

seq1  ACTTCTGCTACAGAACAAACCACCTAGAATAACCTTTTTTTTTAGTTACT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTCTGCTACAGAACAAACCACCTAGAATAACCTTTTTTTTTAGTTACT  100

seq1  GTGTCTTATAATTCTGTGAGATGATGGACTCTACTGGAAAGTTCTGCTGG  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCTTATAATTCTGTGAGATGATGGACTCTACTGGAAAGTTCTGCTGG  150

seq1  TGTCTCTAAAGAAAGAAAAGAATATGTTCAGTCAGGGAAGGAGGCTCAGT  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTCTCTAAAGAAAGAAAAGAATATGTTCAGTCAGGGAAGGAGGCTCAGT  200

seq1  CAATAAAGCTTTTGTACAAGTATAAGGACCTGAGTCCCCATCCCTAGCAC  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAATAAAGCTTTTGTACAAGTATAAGGACCTGAGTCCCCATCCCTAGCAC  250

seq1  ACTTGTGAAAGCTGAGTGCAGCAGTGCACACCTGTACCCCAGCACTGAGG  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACTTGTGAAAGCTGAGTGCAGCAGTGCACACCTGTACCCCAGCACTGAGG  300

seq1  ATCAAGGTCAGGCTGCAGAGACTGGCAGATCCCTGGAGCTCACTGGGAGG  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATCAAGGTCAGGCTGCAGAGACTGGCAGATCCCTGGAGCTCACTGGGAGG  350

seq1  TCAGCCTCACTGAATCAGTGAGGGCAGGAACAGTGAGAGGTCTTGCCTCA  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAGCCTCACTGAATCAGTGAGGGCAGGAACAGTGAGAGGTCTTGCCTCA  400

seq1  GAGAACAAGGCAGAGAGCAACTGAGGAAGACATCTGATATCTCCCTCTGC  450
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGAACAAGGCAGAGAGCAACTGAGGAAGACATCTGATATCTCCCTCTGC  450

seq1  CCTCTACATGCATAAGGACACATGTGCAACACACACACACACCAGAACAT  500
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTACATGCATAAGGACACATGTGCAACACACACACACACCAGAACAT  500

seq1  GTGTCAATATATTCTACTTTAAGAGATAATCAAGCATACAAGAACATTAA  550
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGTCAATATATTCTACTTTAAGAGATAATCAAGCATACAAGAACATTAA  550

seq1  AACATAATCTATCAGGCTATTACTTCCATTTAGATCATTCTTTCATTGGT  600
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AACATAATCTATCAGGCTATTACTTCCATTTAGATCATTCTTTCATTGGT  600

seq1  AGGAAAATGTCTTTCATCCTTTACAATTCTATCAACAATATTTTCTTTCT  650
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGGAAAATGTCTTTCATCCTTTACAATTCTATCAACAATATTTTCTTTCT  650

seq1  CAACCCCAAGTCTGTAACCATTCTACCAACATTTTCTCTTAACCTTACTA  700
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAACCCCAAGTCTGTAACCATTCTACCAACATTTTCTCTTAACCTTACTA  700

seq1  AAGATTCTTTCTTATAATTATAATAAATATATTTTACTAAAATATTATTT  750
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGATTCTTTCTTATAATTATAATAAATATATTTTACTAAAATATTATTT  750

seq1  CCTCTGGTCTCATATTAACTCCTTACACTCATATTTCCTTTCACAGAGAA  800
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCTGGTCTCATATTAACTCCTTACACTCATATTTCCTTTCACAGAGAA  800

seq1  GAGATTACCAATGCTTCTCTTAAACAAAAAGTATTTTCAGAACATGGAAT  850
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GAGATTACCAATGCTTCTCTTAAACAAAAAGTATTTTCAGAACATGGAAT  850

seq1  CATGTTTTTACTTCTGTCTCAGAGGGGAGACAGTGGATCATGACAGGGGA  900
      ||||||||||||||||||||||||||||||||||||||||||||| ||||
seq2  CATGTTTTTACTTCTGTCTCAGAGGGGAGACAGTGGATCATGACA-GGGA  899

seq1  CACATGACAGCAGGAGGAAGAGGCTCACCTGG-CAGTCAGGAAGGTGACT  949
      |||||||||||||||||||||||||||||||| |||||||||| ||||||
seq2  CACATGACAGCAGGAGGAAGAGGCTCACCTGGCCAGTCAGGAA-GTGACT  948

seq1  GATCACATTTCATCACCATGCAAGAAGCTGAGAGAGAGAATAGGAAGTGG  999
      |||||||||||||||||||||||||||||||||||||| ||||| |||||
seq2  GATCACATTTCATCACCATGCAAGAAGCTGAGAGAGAG-ATAGG-AGTGG  996

seq1  GACTATAATATGAG-TGTCAAAGTTCATCTTTACTTATGTACTTCCTCCA  1048
      |||||||||||||| |||||||| |||||||||||||||||||||   ||
seq2  GACTATAATATGAGTTGTCAAAG-TCATCTTTACTTATGTACTTC--TCA  1043

seq1  GTGAGGCCCCACCCCCTAAGGTTCCACAACCTCCCCAAATACCAGCACCA  1098
      |||||| |||||||||||    ||||||  || |||||||| ||||| ||
seq2  GTGAGG-CCCACCCCCTA---GTCCACA--CT-CCCAAATA-CAGCA-CA  1084

seq1  GCTGGAGATCAAGCGTTTATGTG-TATGAGCCTGTGGGGG-TAATTTTAT  1146
      |||||||||| |||||||||||| |||| | ||||||||| || ||||||
seq2  GCTGGAGATC-AGCGTTTATGTGTTATG-GGCTGTGGGGGCTATTTTTAT  1132

seq1  ATTCA  1151
       ||||
seq2  -TTCA  1136

seq1: chr2_143627288_143628404
seq2: B6Ng01-350E05.g_66_1176 (reverse)

seq1  CAAGAGCAGTCACTATTCTAACTCCATAGAGTGTTTTGCTGTTCTACACT  50
      |||||||||||||   ||||||||  ||||| | || ||||| |||||||
seq2  CAAGAGCAGTCACATATCTAACTCATTAGAG-GGTTAGCTGTCCTACACT  49

seq1  TAATATAAATGGAACCTATATTGTGTTCTCTTTTATATCTATATTCTTAT  100
       ||||||||| ||  |||||||| |||||||||||||||||||||| |||
seq2  AAATATAAATTGA--CTATATTGGGTTCTCTTTTATATCTATATTCCTAT  97

seq1  GTAGAAAATTGTATTTGTGAGATTTGAGCACATTCAGTGTATGCTGGTAG  150
      |||||||| |||| ||||||||||||||||||||||||||||||||||||
seq2  GTAGAAAA-TGTA-TTGTGAGATTTGAGCACATTCAGTGTATGCTGGTAG  145

seq1  TTTATGTTGACTGTCGAAGAGTGATCCAATGTGGGCTTACCACACTACTG  200
       |||||||||||||||||||||||||||||||||||||| ||||||||||
seq2  -TTATGTTGACTGTCGAAGAGTGATCCAATGTGGGCTTA-CACACTACTG  193

seq1  TTCACTCTATTCGTGGGACAAGGGAACGGCTTGATTTATTCCTCACG-AG  249
      ||||||||||||||||||||||||||||||||||||||||||||||| ||
seq2  TTCACTCTATTCGTGGGACAAGGGAACGGCTTGATTTATTCCTCACGAAG  243

seq1  GTAGGCTGTGATTTAAAGACATCCGAGTGAGTTCCCCACACAGAATCCAT  299
      ||||||||||||| ||||||||||||||||||||||||||||||||||||
seq2  GTAGGCTGTGATTAAAAGACATCCGAGTGAGTTCCCCACACAGAATCCAT  293

seq1  TGATTCGCTCAAATATCAAATATCACACTCCATCCCACTTGCCCTGTGTG  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGATTCGCTCAAATATCAAATATCACACTCCATCCCACTTGCCCTGTGTG  343

seq1  ACAAGCGAATTAGTCAGTAAAGAGACCTCTTCACTTAATTTCTTTCTATC  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAAGCGAATTAGTCAGTAAAGAGACCTCTTCACTTAATTTCTTTCTATC  393

seq1  CTTACTGGTTCGTTAATAAGATGACATTAATAATTTCTATATTCCACACC  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTACTGGTTCGTTAATAAGATGACATTAATAATTTCTATATTCCACACC  443

seq1  ATGAAAATACATGAATATACCCTGAAGATCCCAAAATGCAAGTATTTATT  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAAAATACATGAATATACCCTGAAGATCCCAAAATGCAAGTATTTATT  493

seq1  TGTGGGGAACAGTATTAAGATAAGAAATCACAATGTAATATAGACTGACT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGTGGGGAACAGTATTAAGATAAGAAATCACAATGTAATATAGACTGACT  543

seq1  TCAACTCACAATCCTCCTGTCTCAGCCTCCAGAGTGCTGAGCTTGAAGGT  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCAACTCACAATCCTCCTGTCTCAGCCTCCAGAGTGCTGAGCTTGAAGGT  593

seq1  ATGCTCCATAGCAGAATCTTATTTGAGTTTTGACAAATATATGCAACTGG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGCTCCATAGCAGAATCTTATTTGAGTTTTGACAAATATATGCAACTGG  643

seq1  GGAACTATCACCCATAGAAAGATAGTATATCCCACCCACCTGGAAATGTT  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAACTATCACCCATAGAAAGATAGTATATCCCACCCACCTGGAAATGTT  693

seq1  CCTCATGTTCCCTTCCAGTCAGAACACACACCCTACCTACAGCCATTATT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCTCATGTTCCCTTCCAGTCAGAACACACACCCTACCTACAGCCATTATT  743

seq1  CATATTCCTCTCACTGTGGATTCATTATACCGGTGCTAGCGTTTAGGTAG  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CATATTCCTCTCACTGTGGATTCATTATACCGGTGCTAGCGTTTAGGTAG  793

seq1  AATCTCATCACATAGGTGTTTCTGTTTCCTATTTATTGCGCTCGACATTA  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AATCTCATCACATAGGTGTTTCTGTTTCCTATTTATTGCGCTCGACATTA  843

seq1  AAGTTGTGAGATGCGCCCCCACTGTTGCATGTGGTAATCTCTCCTTCACT  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AAGTTGTGAGATGCGCCCCCACTGTTGCATGTGGTAATCTCTCCTTCACT  893

seq1  CTCATTGATGAGTTTGCCATTGTGAGGATTCACCCCTGTGATGTATGCCA  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTCATTGATGAGTTTGCCATTGTGAGGATTCACCCCTGTGATGTATGCCA  943

seq1  CTTAAATCTGCCTGGCTGTGCTGTGCCTTTCAGGCACCTCCCACTCCTGC  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTAAATCTGCCTGGCTGTGCTGTGCCTTTCAGGCACCTCCCACTCCTGC  993

seq1  CTTTCCTGATGATCATCTGAACTTAGAGACCTAATCAGACGAAGACGGTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTCCTGATGATCATCTGAACTTAGAGACCTAATCAGACGAAGACGGTA  1043

seq1  TCCACTCCTGTCTCCCTTTGGTCTTAGATGCTCTGCAGCTGAATACTCAG  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCCACTCCTGTCTCCCTTTGGTCTTAGATGCTCTGCAGCTGAATACTCAG  1093

seq1  TTGTCTGGTCCTGAATTC  1117
      ||||||||||||||||||
seq2  TTGTCTGGTCCTGAATTC  1111