BAC Information

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BAC

Clone NameB6Ng01-350H04
Chromosome2 (Build37)
Map Location 21,773,271 - 21,848,517
singlet/doubletdoublet
Overlap genenone
Upstream geneArhgap21, LOC433408, LOC675912, C130046B21Rik, 4933434I06Rik, Thnsl1, Gpr158
Downstream geneLOC637235, Myo3a, LOC100041703, Myo3a, Gad2, Apbb1ip, Pdss1, Abi1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameB6Ng01-350H04.bB6Ng01-350H04.g
ACCGA131113GA131114
length1,1421,172
definitionB6Ng01-350H04.b B6Ng01-350H04.g
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(21,773,271 - 21,773,938)(21,847,317 - 21,848,517)
sequence
gaattctcttgttttgtttgtctgtttgttttgttttgtttttcctttaa
tgagtatcaagtctccttccacatctattttagttacttttggttgaaag
tctattttactagatattagaatggctactccagctcgtttctttggtct
gtttgcttggaaaccctttttccaaccctttaccctttactctgaggtag
tgtctatctttgtggctgaggtatatttcttgtatacagcagaataatag
atcctattttcacatccatttagttagtctatctttttactgaggaactg
agaccatttatgattagagatattagtgaccaacaattgctagttcctgt
tatttgaatggtggcaatagtagtgtgtatgtgagtgtgtgtgcgctcat
gcatgtatgtatgcatctctctctctctctcttgttctattggtgtgaaa
ttatttatttattatgttttcttgggtacagttagtctcattgagtggga
gtttttcttctggtatcttctttagggcagaattatgaaaaaaatattgt
ttaaattttgttttgtcatggaatttcttgttttctccatctatagctat
tgaaagttttgctgggtatcgtagtctaggctgacatctgtggtctctta
gcatctacaagaaatctgcctaggcttttagagtttctgttgagaagaca
ggtgtaactctgatgggtttgccttatgtttttggcccttttcctttgca
tcttttaatattctttgttctgtacatttagtgttttgattattatgtgg
cagcaggattttcctttctggtccaatctatttggtattctgtaagcttc
ttgtatgtttattggcacctctttctttatcataaaggaaattttcttct
atgatcttgttgaagacattttctggggcctttgagttaggcaattctga
atactaaggttttcttgtgacttggcggattttaatctcaagatgatcac
tggatgttttagggtttgttctaaagcagtgtttaacatggtcacttgag
agaagaacaacgattcccccttctgctcatagtagctagtggcatgtgct
gtgctgatctaagaagcaaagttccagaagttgcatttgtct
gaattcaactcccactcctgttagctccctcccagttgcaggtgttatgg
gtataaaaagaagaaaactgagtgggaatgtgactcagtgaggtggcttt
cataagtcatgatccatgctgatgtgggacattgggatcatccattcccc
tataagtaacactaaagtttctatactaaattgactggttcaggtgttta
gacttggatgcaatcctttttttggtctggaaacttggctgggatgaata
gacatttctttatacctcatgatcaataactcactgtaatgtaaacagtt
gttatatgttatttctttttaggaaatagcattaagaaatcgatctgtcc
acatcctgcacaggtgtgtcacacggtacaacctgttcttcttggatact
tgttttcttgtgattggttgaatctaggaaatacaggaaccaggggattc
agaggtagggtattctttgttatttcttgttctttttaagcagtttgaaa
aacaacccttgaaactgatgaatgcttaagacagaggagcaaacacaata
ctctggaagacctgggatgattgttgattttatgtatacaacatttctct
tatttgaaggctagagagatgcctcagtggctaagaacatggcagctctt
ggagaggactccgttcaattcccagcagccacatgggggctcacaatcac
tgtaactccagttccaagagatctgatgtctttttgtagtcttcacaggc
cctccatgaataccgcacaaagacacacctaaagacaaccacaaacacac
aaatatgtaagtaaataagtaaataagtcttcaaagaggcttccttttta
cttgacttagttttacatttttctttttattgaaaatacatccatttctc
atatgatataccatgagaaaagaaaaatcatatcaaagttggacagcaaa
cccaacagaagtaaaattcccaagtgcagatgagagtcagagacccacct
atctacactcagagtcccataaaaatactagctgaagctacaatatatat
gcagagactggtgcagacatgcagctgtgctgctgcctccgactctgtga
gttctatgagctgcttcatgatcagactgtctcatctatacctctgcgta
tccccttacatagggttcctga
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
seq1: chr2_21773271_21773938
seq2: B6Ng01-350H04.b_513_1185

seq1  TCTTGGGTACAGTTAGTCTCATTGAGTGGGAGTTTTTCTTCTGGTATCTT  50
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTTGGGTACAGTTAGTCTCATTGAGTGGGAGTTTTTCTTCTGGTATCTT  50

seq1  CTTTAGGGCAGAATTATGAAAAAAATATTGTTTAAATTTTGTTTTGTCAT  100
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTTTAGGGCAGAATTATGAAAAAAATATTGTTTAAATTTTGTTTTGTCAT  100

seq1  GGAATTTCTTGTTTTCTCCATCTATAGCTATTGAAAGTTTTGCTGGGTAT  150
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGAATTTCTTGTTTTCTCCATCTATAGCTATTGAAAGTTTTGCTGGGTAT  150

seq1  CGTAGTCTAGGCTGACATCTGTGGTCTCTTAGCATCTACAAGAAATCTGC  200
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CGTAGTCTAGGCTGACATCTGTGGTCTCTTAGCATCTACAAGAAATCTGC  200

seq1  CTAGGCTTTTAGAGTTTCTGTTGAGAAGACAGGTGTAACTCTGATGGGTT  250
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTAGGCTTTTAGAGTTTCTGTTGAGAAGACAGGTGTAACTCTGATGGGTT  250

seq1  TGCCTTATGTTTTTGGCCCTTTTCCTTTGCATCTTTTAATATTCTTTGTT  300
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGCCTTATGTTTTTGGCCCTTTTCCTTTGCATCTTTTAATATTCTTTGTT  300

seq1  CTGTACATTTAGTGTTTTGATTATTATGTGGCAGCAGGATTTTCCTTTCT  350
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGTACATTTAGTGTTTTGATTATTATGTGGCAGCAGGATTTTCCTTTCT  350

seq1  GGTCCAATCTATTTGGTATTCTGTAAGCTTCTTGTATGTTTATTGGCACC  400
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGTCCAATCTATTTGGTATTCTGTAAGCTTCTTGTATGTTTATTGGCACC  400

seq1  TCTTTCTTTATCAT-AAGGAAATTTTCTTCTATGATCTTGTTGAAGACAT  449
      |||||||||||||| |||||||||||||||||||||||||||||||||||
seq2  TCTTTCTTTATCATAAAGGAAATTTTCTTCTATGATCTTGTTGAAGACAT  450

seq1  TTTCT-GGGCCTTTGAGTTAGGCAATTCTGAATACT-AGGTTT--CTGTG  495
      ||||| |||||||||||||||||||||||||||||| ||||||   ||||
seq2  TTTCTGGGGCCTTTGAGTTAGGCAATTCTGAATACTAAGGTTTTCTTGTG  500

seq1  ACTTGGCGGATTTT-ATCTCAAGATGATCACTGGATG-TTTAGGGTTTGT  543
      |||||||||||||| |||||||||||||||||||||| ||||||||||||
seq2  ACTTGGCGGATTTTAATCTCAAGATGATCACTGGATGTTTTAGGGTTTGT  550

seq1  TCTAAAGCAGTGTTTAACATGGTCACTTGAGAGA--GACAACGA-TCCCC  590
      ||||||||||||||||||||||||||||||||||   ||||||| |||||
seq2  TCTAAAGCAGTGTTTAACATGGTCACTTGAGAGAAGAACAACGATTCCCC  600

seq1  CTTCTGCCTCATTAGTAGCTAGTGGCATGTGCTGTGCTTGATTCTAAG-A  639
      |||||| |||| ||||||||||||||||||||||||| ||| |||||| |
seq2  CTTCTG-CTCA-TAGTAGCTAGTGGCATGTGCTGTGC-TGA-TCTAAGAA  646

seq1  GCAAAGTTCCAGAAGTTTGCCATTTGTCT  668
      |||||||||||||||||   |||||||||
seq2  GCAAAGTTCCAGAAGTT--GCATTTGTCT  673

seq1: chr2_21847317_21848517
seq2: B6Ng01-350H04.g_65_1236 (reverse)

seq1  TCAGGAACACTATGTAAGAGGATCTGCAGA-GTATAGGGATGGAGAACAA  49
      |||||||| ||||||||| ||||  ||||| |||||  ||| ||| ||| 
seq2  TCAGGAACCCTATGTAAGGGGATACGCAGAGGTATA--GAT-GAG-ACA-  45

seq1  GTTCCTCTGAATCAATGAAGCAGGCTCATAGGAACTCACAGAGTCTGAAG  99
           |||| ||| |||||||| ||||||| |||||||||||||| || |
seq2  ----GTCTG-ATC-ATGAAGCA-GCTCATA-GAACTCACAGAGTCGGAGG  87

seq1  CAGCAGGCACAGGCCCTGCACTGGTCTGCACCAGGTCCTCTGCATATATA  149
      ||||| ||||||   |||||   |||||||||||   |||||||||||||
seq2  CAGCA-GCACAG---CTGCA--TGTCTGCACCAG--TCTCTGCATATATA  129

seq1  TTGTAGCTTTCAGCTTAGTATTTTTATGGGACTCCTGAGTGTAGGAATAG  199
      ||||||| |||||| |||||||||||||||||| ||||||||||  ||||
seq2  TTGTAGC-TTCAGC-TAGTATTTTTATGGGACT-CTGAGTGTAG--ATAG  174

seq1  GTGGGTCTCTGACTCTCATTCCTGCACTTGGGAAATTTTACTTCTGTTGG  249
      |||||||||||||||||||  ||||||||||| |||||||||||||||||
seq2  GTGGGTCTCTGACTCTCAT--CTGCACTTGGG-AATTTTACTTCTGTTGG  221

seq1  GTTTGCTTGTCCAACTTTGATATGATTTTTCTTTTCTCATGGTATATCAT  299
      |||||| |||||||||||||||||||||||||||||||||||||||||||
seq2  GTTTGC-TGTCCAACTTTGATATGATTTTTCTTTTCTCATGGTATATCAT  270

seq1  ATGAGAAATGGATGTATTTTCAATAAAAAGAAAAATGTAAAACTAAGTCA  349
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ATGAGAAATGGATGTATTTTCAATAAAAAGAAAAATGTAAAACTAAGTCA  320

seq1  AGTAAAAAGGAAGCCTCTTTGAAGACTTATTTACTTATTTACTTACATAT  399
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTAAAAAGGAAGCCTCTTTGAAGACTTATTTACTTATTTACTTACATAT  370

seq1  TTGTGTGTTTGTGGTTGTCTTTAGGTGTGTCTTTGTGCGGTATTCATGGA  449
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTGTGTGTTTGTGGTTGTCTTTAGGTGTGTCTTTGTGCGGTATTCATGGA  420

seq1  GGGCCTGTGAAGACTACAAAAAGACATCAGATCTCTTGGAACTGGAGTTA  499
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GGGCCTGTGAAGACTACAAAAAGACATCAGATCTCTTGGAACTGGAGTTA  470

seq1  CAGTGATTGTGAGCCCCCATGTGGCTGCTGGGAATTGAACGGAGTCCTCT  549
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAGTGATTGTGAGCCCCCATGTGGCTGCTGGGAATTGAACGGAGTCCTCT  520

seq1  CCAAGAGCTGCCATGTTCTTAGCCACTGAGGCATCTCTCTAGCCTTCAAA  599
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CCAAGAGCTGCCATGTTCTTAGCCACTGAGGCATCTCTCTAGCCTTCAAA  570

seq1  TAAGAGAAATGTTGTATACATAAAATCAACAATCATCCCAGGTCTTCCAG  649
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAAGAGAAATGTTGTATACATAAAATCAACAATCATCCCAGGTCTTCCAG  620

seq1  AGTATTGTGTTTGCTCCTCTGTCTTAAGCATTCATCAGTTTCAAGGGTTG  699
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  AGTATTGTGTTTGCTCCTCTGTCTTAAGCATTCATCAGTTTCAAGGGTTG  670

seq1  TTTTTCAAACTGCTTAAAAAGAACAAGAAATAACAAAGAATACCCTACCT  749
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TTTTTCAAACTGCTTAAAAAGAACAAGAAATAACAAAGAATACCCTACCT  720

seq1  CTGAATCCCCTGGTTCCTGTATTTCCTAGATTCAACCAATCACAAGAAAA  799
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CTGAATCCCCTGGTTCCTGTATTTCCTAGATTCAACCAATCACAAGAAAA  770

seq1  CAAGTATCCAAGAAGAACAGGTTGTACCGTGTGACACACCTGTGCAGGAT  849
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  CAAGTATCCAAGAAGAACAGGTTGTACCGTGTGACACACCTGTGCAGGAT  820

seq1  GTGGACAGATCGATTTCTTAATGCTATTTCCTAAAAAGAAATAACATATA  899
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  GTGGACAGATCGATTTCTTAATGCTATTTCCTAAAAAGAAATAACATATA  870

seq1  ACAACTGTTTACATTACAGTGAGTTATTGATCATGAGGTATAAAGAAATG  949
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACAACTGTTTACATTACAGTGAGTTATTGATCATGAGGTATAAAGAAATG  920

seq1  TCTATTCATCCCAGCCAAGTTTCCAGACCAAAAAAAGGATTGCATCCAAG  999
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTATTCATCCCAGCCAAGTTTCCAGACCAAAAAAAGGATTGCATCCAAG  970

seq1  TCTAAACACCTGAACCAGTCAATTTAGTATAGAAACTTTAGTGTTACTTA  1049
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TCTAAACACCTGAACCAGTCAATTTAGTATAGAAACTTTAGTGTTACTTA  1020

seq1  TAGGGGAATGGATGATCCCAATGTCCCACATCAGCATGGATCATGACTTA  1099
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TAGGGGAATGGATGATCCCAATGTCCCACATCAGCATGGATCATGACTTA  1070

seq1  TGAAAGCCACCTCACTGAGTCACATTCCCACTCAGTTTTCTTCTTTTTAT  1149
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  TGAAAGCCACCTCACTGAGTCACATTCCCACTCAGTTTTCTTCTTTTTAT  1120

seq1  ACCCATAACACCTGCAACTGGGAGGGAGCTAACAGGAGTGGGAGTTGAAT  1199
      ||||||||||||||||||||||||||||||||||||||||||||||||||
seq2  ACCCATAACACCTGCAACTGGGAGGGAGCTAACAGGAGTGGGAGTTGAAT  1170

seq1  TC  1201
      ||
seq2  TC  1172