CAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACCTCCAAGCTCCTCGCTGGTGAACCTGCAGTGACTAGTCCTGGCCAG
CCCAGTTGTTTGAACATCATTCCTATACAAGAGTTGAAAATGCTGCAGAA
TTGGGTGAGTGGAGATGGGGCTGCCTCCCCTCCTCACAGCTTCCTCCGGA
TGCCCTGGAAGCTGCCTTGGGCTCGCCTCTTTTTCTAGCAAACCATCGCG
TGCTGGAGGAGATATTCCTAAAGAGATCCAGCGTCAGTACAGTAGTTGGA
AAAGAATTCCCTCAGTTTATAGTCATTGGTGAGATTTATGCCTTGTCTGT
TTTTATTGTAACCTATCATTGCAAACTGCTGATTTGAATTCTTTCTTTGG
CACCAGATAGGCCCCCCCTTCTTTGAGGCACAGTTAGGGGGGAAAAATCA
GTATAACTGGATTGGGGTTTGCTCGTTCCCCTCTCTCTATACTACTTCTT
TATATAATTTTTACCATCCATCATTTATTCCCTCTATTCCATTTTTTTTT
CCTTCTCTCTCCCCCCTTCTTTATATTCTCAATTTTTACACATCTTTTTA
CCCTATTTCTTTCTATCTATTCTTATTCTCCTTTTTACTTCTCCTTTATC
GCCTTTTCTTCCTTCCTCCCTTTTTATTGTTGCTACAAACTCTTACCTTT
TTCTTTCTTTTTTTTTT

NCATGCAGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCTGATACACTAAGACTAAGGTCGAAATAAA
AGACACCCACAACCACCACCAAAAACAACCACCTTGAGGAAAGGCTGCAA
GTGTTGGGAAATATAAAGAACTGAGACCTGCCTGGACTCCTACTGCTACC
AAAGAATTACTACCTAGAAGCACCTATGAGTGAAGAATCATTCGGCTTGG
CTGGGTTTCTACGCAGAGCAGCATAGTTGCAGCCCCAGCACCGTCTGCTG
AATCAGGAAGTTTAGGGAAGGAGAAAAAAAAGGCACAAAGCCCCTGGTAA
ATCTGTCTTTGTGTATTCCAGTCATAAACAAGAGTTCCCTCACTTTGCAC
GCAGGCCTGCCGCCACCTTAACTGTGTTTATCATTTCAGACAAAGCATCT
TCAGGAGGCGAGACCATCCTTCTTTCTTGACGGCGCACACTGATTAAATC
TTCTGGAGAGAAGTTAGGCAAAGCAGAAGCCGCCTCCTCTCCAGTCAGCG
AAGCAGATTCCCCAGCACACAAATCTCCTTCCCTCTTCTCATTGTCAGGG
AAAATAATTAAAGGTGATAACATTTTGCGCGCAGTTTCTACTGAAGATGT
TACCTTTTATGTCTGAACTCAATGCTCGAATTTTTTCTC

Query= MSMg01no045_b18.b1 MSMg01no045_b18.b1 CHROMAT_FILE:
MSMg01no045_b18.b1 PHD_FILE: MSMg01no045_b18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:04:59 2005
         (388 letters)



>mm_chr2_49627130_49627917
          Length = 788

 Score =  669 bits (346), Expect = 0.0
 Identities = 361/366 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacctccaagctcctcgctggtgaacctgcagtgactagtcctggccagcccagt 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacctccaagctgctcgctggtgaacctgcagtgactagtcctggccagcccagt 264

                                                                       
Query: 65  tgtttgaacatcattcctatacaagagttgaaaatgctgcagaattgggtgagtggagat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtttgaacatcattcctatacaagagttgaaaatgctgcagaattgggtgagtggagat 324

                                                                       
Query: 125 ggggctgcctcccctcctcacagcttcctccggatgccctggaagctgccttgggctcgc 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggggctgcctcccctcctcacagcttcctccggatgccctggaagctgccttgggctcgc 384

                                                                       
Query: 185 ctctttttctagcaaaccatcgcgtgctggaggagatattcctaaagagatccagcgtca 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ctctttttctagcaaaccatcgcgtgctggaggagatattcctaaagagatccagcgtca 444

                                                                       
Query: 245 gtacagtagttggaaaagaattccctcagtttatagtcattggtgagatttatgccttgt 304
           |||||||||||||||||||||||||||||   | ||||||||||||||||||||||||||
Sbjct: 445 gtacagtagttggaaaagaattccctcaggggaaagtcattggtgagatttatgccttgt 504

                                                                       
Query: 305 ctgtttttattgtaacctatcattgcaaactgctgatttgaattctttctttggcaccag 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctgtttttattgtaacctatcattgcaaactgctgatttgaattctttctttggcaccag 564

                 
Query: 365 ataggc 370
           ||||||
Sbjct: 565 ataggc 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 388
Length of database: 788
Length adjustment: 9
Effective length of query: 379
Effective length of database: 779
Effective search space:   295241
Effective search space used:   295241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no045_b18.g1 MSMg01no045_b18.g1 CHROMAT_FILE:
MSMg01no045_b18.g1 PHD_FILE: MSMg01no045_b18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:04:59 2005
         (446 letters)



>mm_chr2_49774095_49774940
          Length = 846

 Score =  816 bits (422), Expect = 0.0
 Identities = 440/446 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctgatacactaagactaaggtcgaaataaaagacacccacaaccaccaccaaaaacaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 646 tctgatacactaagactaaggtcgaaataaaagacacccacaaccaccaccaacaacaac 587

                                                                       
Query: 61  caccttgaggaaaggctgcaagtgttgggaaatataaagaactgagacctgcctggactc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 586 caccttgaggaaaggctgcaagtgttgggaaatataaagaactgagacctgcctggactc 527

                                                                       
Query: 121 ctactgctaccaaagaattactacctagaagcacctatgagtgaagaatcattcggcttg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 526 ctactgctaccaaagaattactacctagaagcacctatgagtgaagaatcattcggcttg 467

                                                                       
Query: 181 gctgggtttctacgcagagcagcatagttgcagccccagcaccgtctgctgaatcaggaa 240
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 466 gctgggtttctacgcagagcagcatagttgcagccccagcaccatctgctgaatcaggaa 407

                                                                       
Query: 241 gtttagggaaggagaaaaaaaaggcacaaagcccctggtaaatctgtctttgtgtattcc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 406 gtttagggaaggagaaaaaaaaggcacaaagcccctggtaaatctgtctttgtatattcc 347

                                                                       
Query: 301 agtcataaacaagagttccctcactttgcacgcaggcctgccgccaccttaactgtgttt 360
           ||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||||||
Sbjct: 346 agtcataaacaagagttccctcactttgcacgcgggcctgctgtcaccttaactgtgttt 287

                                                                       
Query: 361 atcatttcagacaaagcatcttcaggaggcgagaccatccttctttcttgacggcgcaca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 286 atcatttcagacaaagcatcttcaggaggcgagaccatccttctttcttgacggcgcaca 227

                                     
Query: 421 ctgattaaatcttctggagagaagtt 446
           ||||||||||||||||||||||||||
Sbjct: 226 ctgattaaatcttctggagagaagtt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 446
Length of database: 846
Length adjustment: 10
Effective length of query: 436
Effective length of database: 836
Effective search space:   364496
Effective search space used:   364496
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)