BAC Information

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BAC

Clone NameMSMg01-045C08
Chromosome2 (Build37)
Map Location 98,837,241 - 98,837,506
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC664974, LOC100042886
Downstream geneLOC621386
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045C08.T7 (MSMg01no045_c08.b1)MSMg01-045C08.TJ (MSMg01no045_c08.g1)
ACCAG275850AG275851
length753735
length of high quality
(start - end)
266 (150 - 415)266 (127 - 392)
definitionCHROMAT_FILE: MSMg01no045_c08.b1 PHD_FILE: MSMg01no045_c08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:02 2005CHROMAT_FILE: MSMg01no045_c08.g1 PHD_FILE: MSMg01no045_c08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:02 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNAATGAAGTANNNTCCTCAAAATTGCGGC
GCTAAACGACTCCTATTTCCAGAGGACCGCGGAATTCATCTTTTCCCCCA
TTTATAATAAATAATACTAAAGGGAGAACGTGGATCCATACACCAGACTA
CAGCTGGGATAGGGTATGAGTATACGGGTTATGAGAATGCCTGGTTCCAG
GAGGTTAGGTTTCTGTTAAACTCTTTGCCATGAAACTCTTTGCCTTGTGA
GTGCTTTCAGGCCTCTTGGCCTGCCAAGCAGACTTCACTGGAGCGTGCAT
AGTATATATAGCACAGTTTTGCATGTAATTCCTCAGGTGTCATCTATGTT
TATGGTTTTATTTGTTTGGCTGGTTCTGTATTTGTTTGTTTCAAGATAGG
ATTTCTCACTAAACATAGAATTCATTGATTGGGACAGACTGACTGATTAC
TGAATCTCAAATATCTATCTCTGTTTTCATAGCCCTGGAATTTGTACACT
TAGCATGAATTTTATACCTGTATTGAGGGATATAATATTTGGACTGTGTA
TATACAGCAAGCACTTTTGTACCAAGTTATCATCTCCGTCCTAATTTTAA
ATAATCTTATAATCACTTATCAATTTTGCCCATCATGCATTATATTTTGA
GTATATTACAATTGCTGAATATTCCACACTCCCCTAATTGACCTTAATTA
TTC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAATAAG
NNACTCCTATGATATGTGTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTAACTGTAATCACTGAATATTA
AATTGTTCGTTAGTGTTGGTGGATATTATTTAGTTCTCACTTCATCCATT
ATCTCTATATTCTCCGACTTCTTCAAAAGCACTGATGTAAGGATCCATTT
TCTGAGATACTTCTGTTATCATTATATTTACTATATATATAACTGCCACA
AATTTTATGTCTATTAATTTAGAAGAAAGTGGAGTTGAAGCTGGAGAACA
TTATATTTCCAGGCATTTCTAATTTATTACCTCAGCAACTGTAACAAAAA
ATTAGGCCATTTTTATTCATTGATGATAATAACTTTTACTTCATATCTGG
TATGTTGGAACATCTAAGACAATTTTATTATTTTCCTTAATGTGGACGTT
GTGCCCTTTGAAAACTGAATTTTAAATATTTAAATGTTGAAATAATGTCA
TCCCTTATGACTCTGTTAATATTCAGAGAATAAAATCAATATCTATTAAC
AGGTTTATATGTCATTTTGAAAAAGGTTATTTTTGCTTTTAAAGTGCAGC
CTTAGTGTTAATCTAACTGTGTTTTTATTCTACTGACTATTACTAATTTT
CATGTTTAAAATTGAATTGTATAGTTTGATTTGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_c08.g1 MSMg01no045_c08.g1 CHROMAT_FILE:
MSMg01no045_c08.g1 PHD_FILE: MSMg01no045_c08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:02 2005
         (266 letters)



>mm_chr2_98837041_98837706
          Length = 666

 Score =  453 bits (234), Expect = e-132
 Identities = 258/266 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   tctaactgtaatcactgaatattaaattgttcgttagtgttggtggatattatttagttc 60
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 466 tctaactgtaatcactgaatattaaattgttcattagtgttggtggatattatttagttc 407

                                                                       
Query: 61  tcacttcatccattatctctatattctccgacttcttcaaaagcactgatgtaaggatcc 120
           ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
Sbjct: 406 tcacttcatccattatctctatattctcctacttcttcaaaagcactgatgtaaggatac 347

                                                                       
Query: 121 attttctgagatacttctgttatcattatatttactatatatataactgccacaaatttt 180
           ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||
Sbjct: 346 attttctgagatacttcagttatcattatatttactatatatataattgccacaaatttt 287

                                                                       
Query: 181 atgtctattaatttagaagaaagtggagttgaagctggagaacattatatttccaggcat 240
           |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 286 atgtctattaatttagaagaaagtggagttgaagttggagaacattatatttccaggcat 227

                                     
Query: 241 ttctaatttattacctcagcaactgt 266
           |||||| |||||||| ||||||||||
Sbjct: 226 ttctaagttattaccacagcaactgt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 266
Length of database: 666
Length adjustment: 9
Effective length of query: 257
Effective length of database: 657
Effective search space:   168849
Effective search space used:   168849
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)