Query= MSMg01no045_d14.b1 MSMg01no045_d14.b1 CHROMAT_FILE:
MSMg01no045_d14.b1 PHD_FILE: MSMg01no045_d14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:08 2005
(513 letters)
>mm_chr2_29239151_29240065
Length = 915
Score = 828 bits (428), Expect = 0.0
Identities = 491/514 (95%), Gaps = 8/514 (1%)
Strand = Plus / Plus
Query: 4 ggaattccttgggaaattcgaagtt-gcaggtttaccacctttgggggctcacattctga 62
|||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattccttgggaaatt-gaagtttgcaggtttaccacctttgggggctcacattctgg 262
Query: 63 tggataccaagatgggtttatgtgggccaatgagctggatgactgtaggtgcaagtttct 122
| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||
Sbjct: 263 tagataccaagatgggtttgtgtgggccaatgagctggatgactgtag-tgcaagtttct 321
Query: 123 tttgattagtgaatcgctgcctggatcaggaccatttagttataacctgactccccaggt 182
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 ttcgattagtgaatcgctgcctggatcaggaccatttagttataacctgactccccaggt 381
Query: 183 tctgctggtttaaaaatcaatactggtttttt---aaaaacaagaactttgtatagagag 239
||||||||||||||||||| ||||| |||||| |||||||||||||||||||||||||
Sbjct: 382 tctgctggtttaaaaatcagtactgttttttttttaaaaacaagaactttgtatagagag 441
Query: 240 ctctactgtatgtgagaaatatgaatcacaaagtgaccacatctgcacttctccctgagg 299
||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 442 ctctactgtatgtgagaaatatgaatcacaaagcaaccacatctgtacttctccctgagg 501
Query: 300 agggtctgctctgtctccctgattatcactgcaatcttttctgtgactcactccaggcac 359
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 502 agggtctgctctgtctccctgattatcactgcaaacttttctgtgactcactccaggcac 561
Query: 360 accaacaaacacaccctgaattttgagtttgttatttctagaaggcagatatctgtattc 419
||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 accaacatacacagtctgaattttgagtttgttatttctagaaggcagatatctgtattc 621
Query: 420 ttttaaaaatgtatttatatcttgttttatatatatatgagtatttggcctgcatgcata 479
|||||||||| ||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct: 622 ttttaaaaatttatttatatcttgttttatatatat--gactatttggcctgcatgcata 679
Query: 480 tctctgcaccatatgcctgctggtgcccatggag 513
||||||||||||||||||||||||||||||||||
Sbjct: 680 tctctgcaccatatgcctgctggtgcccatggag 713
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 513
Length of database: 915
Length adjustment: 10
Effective length of query: 503
Effective length of database: 905
Effective search space: 455215
Effective search space used: 455215
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no045_d14.g1 MSMg01no045_d14.g1 CHROMAT_FILE:
MSMg01no045_d14.g1 PHD_FILE: MSMg01no045_d14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:08 2005
(422 letters)
>mm_chr2_29373672_29374493
Length = 822
Score = 712 bits (368), Expect = 0.0
Identities = 410/424 (96%), Gaps = 4/424 (0%)
Strand = Plus / Minus
Query: 1 atctcctgcccatgttacacaggagcagtgggatgaggagggctgcagtacacagtgatt 60
|||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||
Sbjct: 622 atctcctgcccatgttacacgggagcagtaggatgaggagggctgcagtacacagtgatt 563
Query: 61 cagaggaagtaca-aagcacaggaggttgggggtcctggagatagtgcagaagccatgtg 119
||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cagaggaagtacagaa-cacaggaggttgggggtcctggagatagtgcagaagccatgtg 504
Query: 120 ttcccctgtccagggatgagtctgggacacacccctgccccaagcccaggagccaaagtg 179
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 ttcccccgtccagggatgagtctgggacacacccctgccccaagcccaggagccaaagtg 444
Query: 180 gtgacctaggaaaggtttggagtggggaggctcttagacctactgctgccaggcacactt 239
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 443 gtgacctaggaaaggtttggagagggaaggctcttagacctactgctgccaggcacactt 384
Query: 240 ccctgaaagggaaggctctgcaagtgagaggatggaga-cagccatagcagccaggggta 298
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct: 383 ccctgaaagggaaggctctgcaagtgagaggatggagacca-ccatagcagccaggggta 325
Query: 299 ggaacaaccacatggtctgcagcagggaccctcggctgtgtgcgctcctcctcccccacc 358
|||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 324 ggaacaaccatgtggtctgcagcagggaccctcggctgtgtgtgctcctcctcccccacc 265
Query: 359 tcatttccacacagctctaacctggggtagtttagtttttgtagaacgagagacccttga 418
|||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct: 264 tcatttccacacagctctaacctggggtggtttagtttttatagaacgagagacccttga 205
Query: 419 gtgt 422
||||
Sbjct: 204 gtgt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 422
Length of database: 822
Length adjustment: 9
Effective length of query: 413
Effective length of database: 813
Effective search space: 335769
Effective search space used: 335769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
