BAC Information

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BAC

Clone NameMSMg01-045D15
Chromosome2 (Build37)
Map Location 87,468,011 - 87,468,635
singlet/doubletsinglet
Overlap geneOlfr1131
Upstream geneOlfr1084, Olfr1085, Olfr1086, Olfr1087, Olfr1088-ps1, Olfr1089, Olfr1090, Olfr1091-ps1, GA_x5J8B7W3Y5M-123838-124302, Olfr1093, Olfr141, Olfr1094, Olfr1095, Olfr1096-ps1, Olfr1097, Olfr1098, Olfr1099, Olfr1100, Olfr1101, Olfr1102, Olfr1103-ps1, Olfr1104, Olfr1105, Olfr1106, Olfr1107, GA_x5J8B7W3Y5M-419033-418135, Olfr1109, Olfr259, LOC668402, Olfr1110, Olfr1111, Olfr1112, LOC228238, Olfr1113, Olfr1114-ps1, LOC546767, Olfr1115, Olfr1521-ps1, LOC100041923, Olfr1117-ps1, GA_x5J8B7TY7N2-4-429, LOC668424, Olfr1118, Olfr1119-ps1, Olfr1120, Olfr1121, Olfr1122, LOC668432, Olfr1123, Olfr1125, Olfr1126, Pramel7, Pramel6, LOC668439, Olfr1127-ps1, Olfr253-ps1, Olfr1128, LOC100042038, LOC668445, LOC668447, Olfr1129, Olfr1130
Downstream geneOlfr1132, LOC100042076, Olfr1133, Olfr1134, Olfr1135, Olfr1136, Olfr1137, Olfr1138, GA_x5J8B7W3Y5M-1033291-1033773, Olfr1140, Olfr1141, Olfr152, Olfr1142-ps1, Olfr1143, GA_x5J8B7W3Y5M-1094074-1093275, Olfr1145, Olfr1146-ps1, Olfr1147-ps1, Olfr1148, Olfr1149-ps1, Olfr1150-ps1, Olfr1151, Olfr1152, Olfr1153, Olfr1154, Olfr1155, Olfr1156, Olfr1157, Olfr74, Olfr1158, Olfr1159-ps1, Olfr1160, Olfr1161, Olfr73, Olfr1162, Olfr1163, Olfr1164, Olfr1165, Olfr1166, Olfr1167, Olfr1168, Olfr1169-ps1, Olfr1170, Olfr1171-ps1, Olfr1172-ps1, Olfr1173, Olfr1174, Olfr1175, Olfr1176, Olfr1177, Olfr1178, Olfr1179, Olfr1180, Olfr1181, Olfr1182, Olfr1183, Olfr1184, Olfr1185-ps1, Olfr1186, Olfr1187-ps1, Olfr1188, LOC668528, Olfr1189, GA_x5J8B7W4NS2-37772-38277, Olfr475-ps1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045D15.T7 (MSMg01no045_d15.b1)MSMg01-045D15.TJ (MSMg01no045_d15.g1)
ACCAG275911AG275912
length676676
length of high quality
(start - end)		625 (44 - 668)592 (55 - 646)
definitionCHROMAT_FILE: MSMg01no045_d15.b1 PHD_FILE: MSMg01no045_d15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:08 2005CHROMAT_FILE: MSMg01no045_d15.g1 PHD_FILE: MSMg01no045_d15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:08 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTACCTATTCCAAGAGAATCCGCGGAATTCATTCAATTGCCAGTTTCCTA
TATCCATTCTTTCTTTCAATCTATAATTAAGAATTTTGCAAATTCATTTT
TACTGCTAGATATCAACAATGTATTTATGAGGTAGAACACTGTTTATTTC
TCCTGTTATATAATGTAAAGATTTCTGAGTCATGTTTCTTAACCTATTTT
TCATACCAAAAATTACCAGTATCTGTGATAGAGAGTTGAGGAACAGAGAT
TATCCACCATTAGGTGTCCATTACTTTAACCTATTCTGTAATGTGCACAA
GGTCTACATTACTAATTGCAAGAGACAAAATTGGAAGTACTGAACTCATT
TGATCTTTCTACAATATGAAATAAACTCAAATATTACACTCAGGCTATAT
TTCAGAGGTTATTACTTCCATTCTTTAATATATTTAACACACACATTAGT
TTAGTTATTATATTTTTAAAAGCACATGATCTTAAATCCTTTTATTGGTT
TAGAGATTGACAACTACAATAACAAGTTAATATGCTTCAATAAAAAAGTG
GAGAACACAAACATTTACTACTAACAAATAAGATGGCTAGTCCTGTTTTG
TTTTGTTTTATTTTAAAATATTTTAAGTTGAAATAAACTTATACCACTTG
TCTCTACCTTTCCTAGCTTCAGCTAA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTAGAAAGTCTTTAATTTCTTTATTTCTTCTTTGACCTAGTGGTCAT
TAGTAGAGGGTTGTTTAGATTCTATGCATTTGTAGGATTTCTGTTTTTTC
TGTTGTTATTGTTGTTTATATCCATGGTGATCTGATAAGTTGAGAGTAGT
TATTTCAATCTTCTTTTATCTGTTTAGGAGTGCTTTATGACAGAGTACAT
GGTCAGTTTTGGAGATGGTTCCATGCAATCCTAAATAAAAAAATATATTA
ATTTCTGTTTGTATAAAATATTCTGTAGATATTTGTTAGGTCCATTTGAT
TCACAACCTCTGATAGCTTCCTTATTTCTCTGGTTAGTTTCTGCTTTGAT
CACCTGATCATTCATTGGTGAGAGAATGATGCTGAAGTCTCCTGCTACTA
ATGTGTGGGTTCAATGTGTGATTTAAGCTTTAGTAATGTTTCCTTTACAA
ATATGCGAGCCCTTGCACTTGGGTAATAGGTGTTCAAAACTGAGATGTCA
TCTTGGTGGATTTTTCATTTGATGAGTATGAACTGTCCCTTCCCATCTCT
TTTGGTTACTTTTGGTTGATAGTATATTTTTATTAGATAATACAATGGAC
ACTGCAGTTTTTTACTTGGTTCAGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_d15.b1 MSMg01no045_d15.b1 CHROMAT_FILE:
MSMg01no045_d15.b1 PHD_FILE: MSMg01no045_d15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:08 2005
         (625 letters)



>mm_chr2_87467874_87468898
          Length = 1025

 Score = 1154 bits (597), Expect = 0.0
 Identities = 618/625 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcctatatccattctttctttcaatctataattaagaattttgcaaattcatttttac 60
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 762 tttcctatatccattctttctttcagtctataattaagaattttgcaaattcatttttac 703

                                                                       
Query: 61  tgctagatatcaacaatgtatttatgaggtagaacactgtttatttctcctgttatataa 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 702 tgctagatatcaacaatgtatttatgaggtagaacacagtttatttctcctgttatataa 643

                                                                       
Query: 121 tgtaaagatttctgagtcatgtttcttaacctatttttcataccaaaaattaccagtatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 642 tgtaaagatttctgagtcatgtttcttaacctatttttcataccaaaaattaccagtatc 583

                                                                       
Query: 181 tgtgatagagagttgaggaacagagattatccaccattaggtgtccattactttaaccta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 582 tgtgatagagagttgaggaacagagattatccaccattaggtgtccattactttaaccta 523

                                                                       
Query: 241 ttctgtaatgtgcacaaggtctacattactaattgcaagagacaaaattggaagtactga 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 ttctgtaatgtgcacaaggtctacattactaattgcaagagacaaaattggaagtactga 463

                                                                       
Query: 301 actcatttgatctttctacaatatgaaataaactcaaatattacactcaggctatatttc 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 462 actcatttgatctttctacaatatgaaataaactcaaatattagactcaggctatatttc 403

                                                                       
Query: 361 agaggttattacttccattctttaatatatttaacacacacattagtttagttattatat 420
           ||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||
Sbjct: 402 agaggttattacttccattttttaagatatttaacacacacattagtttagttattatat 343

                                                                       
Query: 421 ttttaaaagcacatgatcttaaatccttttattggtttagagattgacaactacaataac 480
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 342 ttttaaaagcacatgatcttaaatccttttattagtttagagattgacaactacaataac 283

                                                                       
Query: 481 aagttaatatgcttcaataaaaaagtggagaacacaaacatttactactaacaaataaga 540
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 282 aagttaatacgcttcaataaaaaagtggagaacacaaacatttactactaacaaataaga 223

                                                                       
Query: 541 tggctagtcctgttttgttttgttttattttaaaatattttaagttgaaataaacttata 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 222 tggctagtcctgttttgttttgttttattttaaaatattttaagttgaaataaacttata 163

                                    
Query: 601 ccacttgtctctacctttcctagct 625
           |||||||||||||||||||||||||
Sbjct: 162 ccacttgtctctacctttcctagct 138


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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