Query= MSMg01no045_d18.b1 MSMg01no045_d18.b1 CHROMAT_FILE:
MSMg01no045_d18.b1 PHD_FILE: MSMg01no045_d18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:09 2005
(247 letters)
>mm_chr2_49627152_49627797
Length = 646
Score = 462 bits (239), Expect = e-135
Identities = 245/247 (99%), Gaps = 1/247 (0%)
Strand = Plus / Plus
Query: 1 ctcgctggtgaacctgcagtgactagtcctggccagcccagttgtttgtancatcattcc 60
|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||
Sbjct: 201 ctcgctggtgaacctgcagtgactagtcctggccagcccagttgtttgaa-catcattcc 259
Query: 61 tatacaagagttgaaaatgctgcagaattgggtgagtggagatggggctgcctcccctcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 tatacaagagttgaaaatgctgcagaattgggtgagtggagatggggctgcctcccctcc 319
Query: 121 tcacagcttcctccggatgccctggaagctgccttgggctcgcctctttttctagcaaac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tcacagcttcctccggatgccctggaagctgccttgggctcgcctctttttctagcaaac 379
Query: 181 catcgcgtgctggaggagatattcctaaagagatccagcgtcagtacagtagttggaaaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 catcgcgtgctggaggagatattcctaaagagatccagcgtcagtacagtagttggaaaa 439
Query: 241 gaattcc 247
|||||||
Sbjct: 440 gaattcc 446
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 247
Length of database: 646
Length adjustment: 9
Effective length of query: 238
Effective length of database: 637
Effective search space: 151606
Effective search space used: 151606
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no045_d18.g1 MSMg01no045_d18.g1 CHROMAT_FILE:
MSMg01no045_d18.g1 PHD_FILE: MSMg01no045_d18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:09 2005
(533 letters)
>mm_chr2_49774008_49774940
Length = 933
Score = 953 bits (493), Expect = 0.0
Identities = 523/533 (98%)
Strand = Plus / Minus
Query: 1 tctgatacactaagactaaggtcgaaataaaagacacccacaaccaccaccaaaaacaac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 733 tctgatacactaagactaaggtcgaaataaaagacacccacaaccaccaccaacaacaac 674
Query: 61 caccttgaggaaaggctgcaagtgttgggaaatataaagaactgagacctgcctggactc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 673 caccttgaggaaaggctgcaagtgttgggaaatataaagaactgagacctgcctggactc 614
Query: 121 ctactgctaccaaagaattactacctagaagcacctatgagtgaagaatcattcggcttg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 613 ctactgctaccaaagaattactacctagaagcacctatgagtgaagaatcattcggcttg 554
Query: 181 gctgggtttctacgcagagcagcatagttgcagccccagcaccgtctgctgaatcaggaa 240
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 553 gctgggtttctacgcagagcagcatagttgcagccccagcaccatctgctgaatcaggaa 494
Query: 241 gtttagggaaggagaaaaaaaaggcacaaagcccctggtaaatctgtctttgtgtattcc 300
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 493 gtttagggaaggagaaaaaaaaggcacaaagcccctggtaaatctgtctttgtatattcc 434
Query: 301 agtcataaacaagagttccctcactttgcacgcaggcccgcccccaccttaactgtgttt 360
||||||||||||||||||||||||||||||||| |||| || ||||||||||||||||
Sbjct: 433 agtcataaacaagagttccctcactttgcacgcgggcctgctgtcaccttaactgtgttt 374
Query: 361 atcatttcagacaaagcatcttcaggaggcgagaccatccttctttcttgacggcgcaca 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 atcatttcagacaaagcatcttcaggaggcgagaccatccttctttcttgacggcgcaca 314
Query: 421 ctgattaaatcttctggagagaagttaggcaaagcagaagccgcctcctctccagtcagc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 ctgattaaatcttctggagagaagttaggcaaagcagaagccgcctcctctccagtcagc 254
Query: 481 gaagcagattccccagcacacaaatctccttccctcttctcattgtcagggaa 533
|||||||||||||||||| |||||||||||||||| |||||||||||||||||
Sbjct: 253 gaagcagattccccagcatacaaatctccttcccttttctcattgtcagggaa 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 933
Length adjustment: 10
Effective length of query: 523
Effective length of database: 923
Effective search space: 482729
Effective search space used: 482729
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
