BAC Information

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BAC

Clone NameMSMg01-045F01
Chromosome2 (Build37)
Map Location 117,437,421 - 117,601,031
singlet/doubletdoublet
Overlap genenone
Upstream geneTmco5, LOC100043557, LOC241621, Spred1, LOC624574, 2610510H03Rik, Rasgrp1
Downstream geneThbs1, Fsip1, Gpr176, 1700054M17Rik, Eif2ak4, Srp14, LOC668859, Bmf, LOC640461, Bub1b, Pak6, Gm1337, Plcb2, LOC100043272, A430105I19Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045F01.T7 (MSMg01no045_f01.b1)MSMg01-045F01.TJ (MSMg01no045_f01.g1)
ACCAG275979AG275980
length771780
length of high quality
(start - end)
269 (103 - 371)408 (152 - 559)
definitionCHROMAT_FILE: MSMg01no045_f01.b1 PHD_FILE: MSMg01no045_f01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:14 2005CHROMAT_FILE: MSMg01no045_f01.g1 PHD_FILE: MSMg01no045_f01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(117,437,421 - 117,437,684)(117,600,624 - 117,601,031)
sequence
TTTATCTCTACACACCCTCCCCTCTCCACTTCCTCCTCTTTTTCTTCCTA
CCTTCTTTTTTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAG
AATCCGCGGAATTCAACTCTTGGCCCGGTTTTGGGTAAAATTAGCAGATC
CAATGACTGGTCAGTCATTGCATCTATCACACAGATAGAAAACGTCATTA
CGCTGTATGACAGTTGCGAACCATCTTTGCGTGGGCATATGAATGACAGT
GTTGGGCTTTGGTCTTGTTCTCAAGCTTGCCTTCGGCAGTAGTGCTGATC
CTTAGATGCAGTGAGTGAAACGCTAGCCTTCCTTGGACAGGCCCCAGCAT
CCCTGACATCCAAGGTGAGACACAGCAAAATAAAGCATGCTCCATGATGA
GGGTCAGGGGGATTTGCTCATCCCATGGCCTGCTCTCACAATCCTCTTCT
GGCTGACTGATTTTTGCTTACGCCCTACGTTCTTGGAATAAGTATTTTAG
TTTGTTTGCATTGTCACAGGTGATATGTATGGCTGTGTATCAAATGCAAT
CTGAACTCCATTCTTACTACTTTCCCAACCCAACTCCATCTCTCGGTGCC
TAATCTTCCTCTTTCATCCTGCTATCTCTTCTTTTTCACGACCAGATTAA
CCCTTTTATTCTGTGTGTTGTTGCTGGTGTTTGATTTGTTTTGCCCAAAT
GATCAGTTGTAACCGAATGAAATATGACTCTTAAGATATCCGTCCTTTAT
ATATTTTGTTTATAGTTATTG
NNNNNNNNNNNNNNNNNNNNNNNNNNNTTTTNNNNNNNNNNNNNNNNNNN
NNNNNNNTTTTNTTTAATTTTTTTTTTCGATGAXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XTGTGGGATGGCTCTCAGTTTCCTATGCACTCTAGAGGTTAAAAATATTT
ATTTAGCATATATCATGATTTTTTAAGAGAAATTACTTGTGAATGGAATA
GAACCATTATCACATGTCTTCTCAGAAACCTGGAACAAATGCTCCCCCAA
GAATTAACTTCATTCATATGTAAAGGTCAAGGGGAAATCAACATAGAATT
CATAAATACTTGAAAATGGGAGATTGGCTGAAAAGGAATAAGAAAAGACA
ATTTTTAGTGAATTAGAACACATTGAAAACAAAATTTATGTTAAATAGAT
GAAAAGTATTACCATAAAATTCTGGAACTTAATTAATGATGCGCATTTAT
AGTAAGCTGACAAGATATTTTGCCTGGTCCTGTCTTTGGAAATAAGTATG
CTGAGCATATTAACATAAATAATACACACAATATATTACACACACATACA
CATATTTATTTATGAATTTAGTCAGTGGAGTTGCAACTGTAATGAAATTC
TAAGACAGTAAAAACTAAATGAATGGAAATATAGAGAAGTAAGTAGGTCA
TTGAATATCATGAATAAATTTGCAGAACAGCCTCATTTTTACAGTCTGTC
AACTTGCAGGAGAAAGAAAAATTTTGGCAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_f01.b1 MSMg01no045_f01.b1 CHROMAT_FILE:
MSMg01no045_f01.b1 PHD_FILE: MSMg01no045_f01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:14 2005
         (269 letters)



>mm_chr2_117437216_117437884
          Length = 669

 Score =  480 bits (248), Expect = e-140
 Identities = 260/264 (98%)
 Strand = Plus / Plus

                                                                       
Query: 6   ggaattcaactcttggcccggttttgggtaaaattagcagatccaatgactggtcagtca 65
           |||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||
Sbjct: 206 ggaattcaactcttggcagggttttgggtaaaattagcagatccaatgactggtcagtca 265

                                                                       
Query: 66  ttgcatctatcacacagatagaaaacgtcattacgctgtatgacagttgcgaaccatctt 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ttgcatctatcacacagatagaaaacgtcattacgctgtatgacagttgcgaaccatctt 325

                                                                       
Query: 126 tgcgtgggcatatgaatgacagtgttgggctttggtcttgttctcaagcttgccttcggc 185
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 tgcatgggcatatgaatgacagtgttgggctttggtcttgttctcaagcttgccttcggc 385

                                                                       
Query: 186 agtagtgctgatccttagatgcagtgagtgaaacgctagccttccttggacaggccccag 245
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 agtagtgttgatccttagatgcagtgagtgaaacgctagccttccttggacaggccccag 445

                                   
Query: 246 catccctgacatccaaggtgagac 269
           ||||||||||||||||||||||||
Sbjct: 446 catccctgacatccaaggtgagac 469


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 269
Length of database: 669
Length adjustment: 9
Effective length of query: 260
Effective length of database: 660
Effective search space:   171600
Effective search space used:   171600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no045_f01.g1 MSMg01no045_f01.g1 CHROMAT_FILE:
MSMg01no045_f01.g1 PHD_FILE: MSMg01no045_f01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:14 2005
         (408 letters)



>mm_chr2_117600424_117601231
          Length = 808

 Score =  743 bits (384), Expect = 0.0
 Identities = 402/408 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtgggatggctctcagtttcctatgcactctagaggttaaaaatatttatttagcatat 60
           ||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||
Sbjct: 608 tgtgggatggctctcagttccctatgcactctagaagttaaaaatatttatttagcatat 549

                                                                       
Query: 61  atcatgattttttaagagaaattacttgtgaatggaatagaaccattatcacatgtcttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 548 atcatgattttttaagagaaattacttgtgaatggaatagaaccattgtcacatgtcttc 489

                                                                       
Query: 121 tcagaaacctggaacaaatgctcccccaagaattaacttcattcatatgtaaaggtcaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 tcagaaacctggaacaaatgctcccccaagaattaacttcattcatatgtaaaggtcaag 429

                                                                       
Query: 181 gggaaatcaacatagaattcataaatacttgaaaatgggagattggctgaaaaggaataa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 gggaaatcaacatagaattcataaatacttgaaaatgggagattggctgaaaaggaataa 369

                                                                       
Query: 241 gaaaagacaatttttagtgaattagaacacattgaaaacaaaatttatgttaaatagatg 300
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 368 gaaaagacaatttttagtgaattagaacacattgaaaacacaatttatgttaaatagatg 309

                                                                       
Query: 301 aaaagtattaccataaaattctggaacttaattaatgatgcgcatttatagtaagctgac 360
           |||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||
Sbjct: 308 aaaagtattaccataaaattctggaacttaattaatgatgtgtatttatagtaagctgac 249

                                                           
Query: 361 aagatattttgcctggtcctgtctttggaaataagtatgctgagcata 408
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 aagatattttgcctggtcctgtctttggaaataagtatgctgagcata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 408
Length of database: 808
Length adjustment: 9
Effective length of query: 399
Effective length of database: 799
Effective search space:   318801
Effective search space used:   318801
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)