BAC Information

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BAC

Clone NameMSMg01-045F04
Chromosome2 (Build37)
Map Location 96,709,007 - 96,858,980
singlet/doubletdoublet
Overlap genenone
Upstream genenone
Downstream geneLOC100043267, Lrrc4c, LOC621146, LOC664974
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045F04.T7 (MSMg01no045_f04.b1)MSMg01-045F04.TJ (MSMg01no045_f04.g1)
ACCAG275985AG275986
length763679
length of high quality
(start - end)
448 (107 - 554)293 (55 - 347)
definitionCHROMAT_FILE: MSMg01no045_f04.b1 PHD_FILE: MSMg01no045_f04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:15 2005CHROMAT_FILE: MSMg01no045_f04.g1 PHD_FILE: MSMg01no045_f04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(96,709,007 - 96,709,333)(96,858,688 - 96,858,980)
sequence
TGGTGGTTGTGGGTGTGGGGTGTTTTTTTTTTTTTTTTTTNTNNNNNTTA
TAAAAGCCCCCTCTATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCG
AGGATCCGCGGAATTCTCCACAACTTTTTCTATACTCTGTCCAGTGGTAT
AGCAAAGCTACTATCCTGATGTTCTCAATTCCTCATTAATGAGAATGGGA
GAGTCCTGTCTCTAGTCTACTAGACAAAGTCATTGCACATCATGCAGGTA
TCCCAAAAACAGGGTAATTCTGAGAACAGGAAAAACCTTGAGGAATTTCA
ACTTAAGAGAAAATCAATAAGGGCTTTGGAGAACAAGTACATAAAAGGTG
TCGTGTACAGGATAGAGGCTAAAAATATTTGTTGAGTGACTAAGTAGTTG
AATGGCATCTACTCGGCCCAAGTAGATTCAGCCTTTTAACATTATTTACT
TCTAGAGAATGACTCGAGTTTTAAGAAGCGCTTTTCCACTATTTCTCAGT
CTTTTTCTTTTCTTTTCTTTCCTTTTCCTTTCTTTTCTTTTCTTTTTCTT
TTCTTTTCTTTTCTTTTGTCTCAAATAATTTTGGAGAAGCTAGAGAGATT
GTGAATGATGCTGTACATCTGGAATTGAGGCTGAATGAAACTTGTGTTTA
GCCTTGAAAAATAGCTCTAAGATTTACATGGAACTTCCTAGGATTATGAA
ATCCCCTTTAGACCGGCCCCCTTAGGTTTTGTCTTTATTGTGTTTCCTTA
AAATCTATGTTTA
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXTTCTTGATTTATTTTTCTTCTGGACTAATTTGTAATTTGGTGTATT
GTTCAGAATAACACTGAATACATTTATGCAGACATTACTTGAAAAAGAAT
CAGGGCAGGTATTTATGTGCACTTCCATGCACACAAGTTTGAAGTTACAG
TTTAGACATTAAGTGCATGCCAACGAAGTGTGAAGACTTAATTTCAAATC
CACATAAACCACATAAAGTCCAGGCCAGTACTATACACCTGCCATCCAAT
ACTCTAGCCATGAGATGGGAATACAGAGATAAGAGAACCCAAGGAGCTCA
GGGACCAGATTGCTTGGCATATGTAGCACAGATGGGGGGAAACAATACTG
AGAAAAGGTAGATGTTGATTACAGCCACCCTAGATTGTCCTTTGCCTCCT
ACACATGCAACACGGCATACACAAACATATGCCAAAAGACCCAGGTGATC
TCTGAATAGTAATAGAATATAACCTGTTTGTAGATTTAAGAAAGAATACG
ACTCATTGATTTTTATAATAGAAAACAATATAATTCCTGAGTTTCTCTTT
CTTTGATAAAAAACATGAAAGAATTTCCAAGCTCAGCTTTTTTTATTTTT
TTAATTTTTAGGCTAGTAAACTTTAAACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_f04.b1 MSMg01no045_f04.b1 CHROMAT_FILE:
MSMg01no045_f04.b1 PHD_FILE: MSMg01no045_f04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:15 2005
         (448 letters)



>mm_chr2_96708803_96709650
          Length = 848

 Score =  609 bits (315), Expect = e-178
 Identities = 324/327 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctccacaactttttctatactctgtccagtggtatagcaaagctactatcctgat 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctccacaactttttctatactctgtccagtggtatagcaaagctactatcctgat 264

                                                                       
Query: 65  gttctcaattcctcattaatgagaatgggagagtcctgtctctagtctactagacaaagt 124
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gtcctcaattcctcattaatgagaatgggagagtcctgtctctagtctactagacaaagt 324

                                                                       
Query: 125 cattgcacatcatgcaggtatcccaaaaacagggtaattctgagaacaggaaaaaccttg 184
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 325 cattgcacatcatgcaggtatcccaaaaacagggtaattctgagaacaggaaaaacctcg 384

                                                                       
Query: 185 aggaatttcaacttaagagaaaatcaataagggctttggagaacaagtacataaaaggtg 244
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 385 aggaatttcaacttaagagaaaatcaataagggctttggagaacaagtacttaaaaggtg 444

                                                                       
Query: 245 tcgtgtacaggatagaggctaaaaatatttgttgagtgactaagtagttgaatggcatct 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tcgtgtacaggatagaggctaaaaatatttgttgagtgactaagtagttgaatggcatct 504

                                      
Query: 305 actcggcccaagtagattcagcctttt 331
           |||||||||||||||||||||||||||
Sbjct: 505 actcggcccaagtagattcagcctttt 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 448
Length of database: 848
Length adjustment: 10
Effective length of query: 438
Effective length of database: 838
Effective search space:   367044
Effective search space used:   367044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no045_f04.g1 MSMg01no045_f04.g1 CHROMAT_FILE:
MSMg01no045_f04.g1 PHD_FILE: MSMg01no045_f04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:15 2005
         (293 letters)



>mm_chr2_96858488_96859180
          Length = 693

 Score =  543 bits (281), Expect = e-159
 Identities = 290/293 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttcttgatttatttttcttctggactaatttgtaatttggtgtattgttcagaataacac 60
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 493 ttcttgatttatttttcttctggactaatttgtaatttggtgtatcgttcagaataacac 434

                                                                       
Query: 61  tgaatacatttatgcagacattacttgaaaaagaatcagggcaggtatttatgtgcactt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 tgaatacatttatgcagacattacttgaaaaagaatcagggcaggtatttatgtgcactt 374

                                                                       
Query: 121 ccatgcacacaagtttgaagttacagtttagacattaagtgcatgccaacgaagtgtgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 373 ccatgcacacaagtttgaagttacagtttagacattaagtgcatgccaacggagtgtgaa 314

                                                                       
Query: 181 gacttaatttcaaatccacataaaccacataaagtccaggccagtactatacacctgcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 gacttaatttcaaatccacataaaccacataaagtccaggccagtactatacacctgcca 254

                                                                
Query: 241 tccaatactctagccatgagatgggaatacagagataagagaacccaaggagc 293
           |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tccagtactctagccatgagatgggaatacagagataagagaacccaaggagc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)