BAC Information

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BAC

Clone NameMSMg01-045G04
Chromosome2 (Build37)
Map Location 101,046,670 - 101,047,040
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042907, LOC241572, LOC668705
Downstream geneB230118H07Rik, Rag2, Rag1, LOC100042930, Traf6, 2600010E01Rik, LOC100043302, Commd9, Ldlrad3, LOC674202
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045G04.T7 (MSMg01no045_g04.b1)MSMg01-045G04.TJ (MSMg01no045_g04.g1)
ACCAG276031AG276032
length781749
length of high quality
(start - end)
304 (141 - 444)371 (126 - 496)
definitionCHROMAT_FILE: MSMg01no045_g04.b1 PHD_FILE: MSMg01no045_g04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:19 2005CHROMAT_FILE: MSMg01no045_g04.g1 PHD_FILE: MSMg01no045_g04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:20 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNNNNNNNNNNNNNNNNCCCCCCCCNNNNCCCCTTTTNNNTTTTTTNTNN
CNTTTACGTAAAACCCNCTTCXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XCAATATGAGAACGCGGAATTCTCAACTTACGAATATTGAATATCAGAGA
AGCACCTAAAGAAATGTTCAATGTCTCCCACCCAATACCCGATCATGTTT
CCCTCTCCGCACCCCCACACCCTGTCCCCTTTCCCTCCCAGGTCGCTACC
TTCCCATTGTTGTTGCTTTTCTCTCCCTCCCAAGTGGGACTGAGGCATCT
TCACTTGGGCCCTTCTGCTTGTTGACCTTTTTGAGTTCCGCGCTGTATCT
TGGGTATTCGGCTTATTTATTTATTTATTTATTTATTTATTTATTTATTT
ATTTATTTATTTATTTATTTATTTATTTATTTATTGCTAGTATCCACTTA
ATTAAGTGGAAGTACCCTTTATCCATGGGTCCTGTGGTCCTTTCTTCTTT
TTTTAATTCTTCTATTCCTTCTCTCTCTACATCCTTATCAACTAATCACA
TATCCTCATCTGATTCTTTTCTTCCTTCTCCCCTTACTTATCTATATTAT
ATAGTTCATTTTTATATCCAAAATAAATTTATTATTAACCAATTCAAACA
AAACATTATAAAAAATTAATCACCACACTTCTAAATAAAATATACTTTCA
TATATCTTTCTCATATTACTTTTTTTTCTTCTTTCTCTCCCTTATCTTTC
CATTTCTACATTTACCACCAATATTTACAAC
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAACACA
TATCNNCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXTTTCCCGCGGAATTCTGAAGACATACTAAGTTTTAGT
TTTAGAAGAAGCATTCATACATTTTTTCCATGTTATCTGTACTAATTTAG
AATCTCATCAATTGTCCCAGCCACCTAGCTGTTGGAAACACAGAGTTCTG
GAAAGGGAGGTCAAGGCAAGTAGAGACACAAAACTCTGAATTCGATTGAA
GAATAAACAATTTTTATTTTTCTCACGACTTTTTATGCATTGCTTATCTA
AATACAAGAGATAGCATTAATCTAATCAATGCTATCTCTATGCAGCCAAG
GCTGGCCTAGAGCTCACTATGCAGCCAAGGCAAACATTCCTCCCCCCCCC
CACTTGTCTAGTTCTTCCTTTCACACTTCCCTGCCCTTGTGACCCTGTTC
AGACCAAGAGAAAGTTCCCCCTAGGCTTTATCTCATGCCATCAGTTTTCT
GCAATCACAGGGCCAATGTGGCCTTAGGATTGGTCCAATAAAAGAAACTT
GCAGACCCTTCTTCTGGACCTCAAAATCTCCCACTTCCTTGATTTTGTGA
CAGCAGAGTTACATAAACCATCTCTTTTGGGCAAAAATCACTTTTGTACC
GGACTCCTTTGTGATAAAGGGGGCATCTTATCTAAAATGCATACTATAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_g04.g1 MSMg01no045_g04.g1 CHROMAT_FILE:
MSMg01no045_g04.g1 PHD_FILE: MSMg01no045_g04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:20 2005
         (371 letters)



>mm_chr2_101046471_101047241
          Length = 771

 Score =  665 bits (344), Expect = 0.0
 Identities = 365/372 (98%), Gaps = 2/372 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctgaag-acatactaagttttagttttagaagaagcattcatacattttttccatgtt 59
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 ttctgaagcacatactaagttttagttttagaagaagcattcatacattttttccatgtt 259

                                                                       
Query: 60  atctgtactaatttagaatctcatcaattgtcccagccacctagctgttggaaacacaga 119
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 260 atctgtactaatttagaatctcatcaattgtcccagccatctagctgttggaaacacaga 319

                                                                       
Query: 120 gttctggaaagggaggtcaaggcaagtagagacacaaaactctgaattcgattgaagaat 179
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gttccggaaagggaggtcaaggcaagtagagacacaaaactctgaattcgattgaagaat 379

                                                                       
Query: 180 aaacaatttttatttttctcacgactttttatgcattgcttatctaaatacaagagatag 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 aaacaatttttatttttctcacgactttttatgcattgcttatctaaatacaagagatag 439

                                                                       
Query: 240 cattaatctaatcaatgctatctctatgcagccaaggctggcctagagctcactatgcag 299
           |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cattaagcaaatcaatgctatctctatgcagccaaggctggcctagagctcactatgcag 499

                                                                       
Query: 300 ccaaggcaaacattcctccccccccccacttgtctagttcttcctttcacacttccctgc 359
           |||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 500 ccaaggcaaacattcc-cccccccctcacttgtctagttcttcctttcacacttccctgc 558

                       
Query: 360 ccttgtgaccct 371
           ||||||||||||
Sbjct: 559 ccttgtgaccct 570


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 371
Length of database: 771
Length adjustment: 9
Effective length of query: 362
Effective length of database: 762
Effective search space:   275844
Effective search space used:   275844
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)