BAC Information

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BAC

Clone NameMSMg01-045G09
Chromosome2 (Build37)
Map Location 159,842,579 - 159,842,874
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043689
Downstream geneGm826, Mafb, LOC100043892, Top1, Plcg1, Zhx3, Lpin3, Emilin3, Chd6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-045G09.T7 (MSMg01no045_g09.b1)MSMg01-045G09.TJ (MSMg01no045_g09.g1)
ACCAG276041AG276042
length788980
length of high quality
(start - end)
290 (126 - 415)---
definitionCHROMAT_FILE: MSMg01no045_g09.b1 PHD_FILE: MSMg01no045_g09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:21 2005CHROMAT_FILE: MSMg01no045_g09.g1 PHD_FILE: MSMg01no045_g09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 12:05:21 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNTTTTNNNCCATCGATTACCCAATCXXXXXXXXXXXXXXXXXX
XXXXXXXCTATTCAAAGAGAGACCGCGGAATTCTCTATTTTCACAAAAGA
CTATTTTTATGCTTTTCATATATCCTTGGACTGGCTACTTTCTGTTTTGC
TTTGATGTCTTTTTTTTTTCAAGCCTTTGAAAATCCCTGCTTGAATTAGT
TATGCCAAGCCAGGAAAAGGGGGTGCGTCCTGACTAAGTCTTACAGCTAA
ACAGAGGGAGGGTGACAGGTATGGATATTGTATATGTGTATGATCCTAGG
AGCCCGTGTATGTGTGTGTGTGTGTGTGTGTGTGCGTGTGTGTGTGTGTG
TGTGTGACATTTGTGAGTGCATGATAGAGTGTTTGTGCCTCCTCTTTGAT
GATCAAGGCAGGAGGTGTAGAGTGTATGTGGTCGATAGGAATGCACAGGC
CAAGTGAGGTATGATGAGGGGTGCTCATTGCTGCTGCTCAGCCCTTTATT
ACAAAAAAACTACATTCCCACCAGTAGGCAGAAGGGTAATAAAACCAGTG
GCTCCCCCATTTATGATGCTAACTGAGACTCCTTACTTTGTATCTCGACT
ATTCCCTGAGCATCAAGGTCAAATTTCTCTTTCATGTCCTTGTCTTTCAA
AGATCCCCCCCGTCTCCCCACCAATTAACCACCCCTATTGCTTGAAACAT
TCCCCAATAGAACTTCTGCTTTTGTAAAAACCCTTACA
TCTCCTCCCCTCTCCTTCCTCTTCTCCCCCCCCCCCCCTTCCTCTTTTTT
CTTTTTTCTTTTGTTTCTTGAAAGAAATGCGTAGGCCCGGAGGCCGCCCG
GCTACATCACCCGAAGTNGAACNANAGAAGTTTTCCCCAAACCCTTCTGC
ATTGCCCACACCCCGAGTCGATGACTCCGGAGGCCCCAGATCATACACGC
TAGCCTGCCCCTGCCCCGCAACGACGACCTACCTAACACGTCGCCGCTCG
GCGTGCCGTACCCATCCCACGCCACCTCGACCACGTAGCCCGCCTCTGCC
TACTCTTCCCCCTCCCCCGATTTTTCGAGTAGCCTCCTGTAGAACATTAC
CCCCGAGCTCCGCCCCCCCCACACTGGCCGTCTGCCACGAGTTCTGCGAA
TGCCTACATACCCCCCTACCTCTGGAACCCTCTCTCCCGACCGCTCCAAC
ATGAACATCAACAAGATGCCCCCCTCGTACAAGCTTCTGCACCCCCTTAT
CCCCCTCCGGATTCACTCTTATCCCTCCTCCCCCTGTCGGTCCTTTTGTG
TCTCACGTGGTTCCTCCTCCACTACTCTCACTCCGCTCGAAAACACTGCA
TACTCTTTTTGGTCCACCTCTAATTAAACCCTTCCTTCCTGTCTGCCTCC
TTACTTCCCCATTACGAACTTCCTTCTCCTCTCACGCCTCTCATTTCTCT
AACATCCACACATTTTAAGTGCGGCTTATTGTTCCAACCACATTACTCTC
CCCTCCTCCAAAACATCCCATCGCGCACCTTCTGTTTGTGACGCCCTGCC
CACTCTCCTCCCCCTCCCTCCCAAACTCCGTATCTCTCCCCTTCTCTCTT
CCCCCCGCCCTCTTCCCTTTCTCCCCCCGCCTCTATTTCTGTCCCCTCCC
TTCCGCTCCGCCCTTCTCCCTGCTTTTCGTATTCGCTTTATCCCTGTCCC
TTTTCCCCCCCGTCCCTTTCCATTCCCCCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no045_g09.b1 MSMg01no045_g09.b1 CHROMAT_FILE:
MSMg01no045_g09.b1 PHD_FILE: MSMg01no045_g09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:21 2005
         (290 letters)



>mm_chr2_159842377_159843066
          Length = 690

 Score =  455 bits (235), Expect = e-132
 Identities = 278/299 (92%), Gaps = 14/299 (4%)
 Strand = Plus / Plus

                                                                       
Query: 3   gaattctctattttcacaa-aagactatttttatgcttttcatatatccttggactggct 61
           |||||||||||||| | || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 203 gaattctctattttgaaaacaagactatttttatgcttttcatatatccttggactggct 262

                                                                       
Query: 62  actttctgttttgctttgatgtcttttttttttcaagcctttgaaaatccctgcttgaat 121
           ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
Sbjct: 263 actttctgttttgctttgatgtctttttttttt-aagcctttgaaaatccctgcttgatt 321

                                                                       
Query: 122 tagttatgccaagccaggaaaagggggtgcgtcctgactaagtcttacagctaaacagag 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tagttatgccaagccaggaaaagggggtgcgtcctgactaagtcttacagctaaacagag 381

                                                                       
Query: 182 ggagggtgacaggtatggatattgtatatgtgtatgatcctaggagcccgtgtatgtgtg 241
           ||||||||||||||||||||||||||||| |||||||||| ||||||  |||| ||||||
Sbjct: 382 ggagggtgacaggtatggatattgtatatatgtatgatcccaggagc--gtgtgtgtgtg 439

                                                                      
Query: 242 tgt----------gtgtgtgtgtgtgtgcgtgtgtgtgtgtgtgtgtgtgacatttgtg 290
           |||          ||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 440 tgtttgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgacatttgtg 498


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space:   191361
Effective search space used:   191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)