Query= MSMg01no045_h20.b1 MSMg01no045_h20.b1 CHROMAT_FILE:
MSMg01no045_h20.b1 PHD_FILE: MSMg01no045_h20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:27 2005
(634 letters)
>mm_chr2_116006246_116007279
Length = 1034
Score = 1168 bits (604), Expect = 0.0
Identities = 625/632 (98%), Gaps = 1/632 (0%)
Strand = Plus / Plus
Query: 4 ggaattccacatgtagacgattgaaaggagactcttatctctctccctttgcaaaa-cca 62
|||||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct: 203 ggaattccgcatgtagaagattgaaaggagactcttatctctctccctttgcaaaaacca 262
Query: 63 actcaaaatgaactgaagaccttaatgtggaaacccactatagaaaacatgaagatattg 122
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 actcaaaatgaactgaagaccttaatgtggaaacccactatagaaaacatgaagatattg 322
Query: 123 gcatagacaataacttcctgaccaggacttcagtatttgaggaaataatggtaaggcttg 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gcatagacaataacttcctgaccaggacttcagtatttgaggaaataatggtaaggcttg 382
Query: 183 acagaaaggaccacacttaatggagagccctacccagaaggagcacactgaactgagagc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 383 acagaaaggaccacacttaatggagagccctacccagaaggagcacactgaactgagagc 442
Query: 243 cctgcacaattcagggaatactcaacagggcggatgagattgctttaggagcaatcagca 302
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 443 cctgcacaattcagggaatacgcaacagggcggatgagattgctttaggagcaatcagca 502
Query: 303 gatatgcaaattgatacaaattgatgtaaattgataccactagtatgaaaaacactagaa 362
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 503 gatatgcaaattgatacaaattgatgtaaattgataccactagtatggaaaacactagaa 562
Query: 363 gctgtctcaaaaaccgaatgatgcaacaatcagataatgagcttcaggtgatcctccagt 422
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gctgtctcaaaaaccgaatgatgcaacaatcagataatgagcttcaggtgatcctccagt 622
Query: 423 gctgttggaagctttaatttgttggcacggaggtttgctttatggatagtgaaacaggta 482
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 gctgttggaagctttaatttgttggcacggaggtttgctttatggatagtgaaacaggta 682
Query: 483 aacacggaggcatctgacattggattggcacctgttctgttgactctcctgagacatccc 542
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 aacatggaggcatctgacattggattggcacctgttctgttgactctcctgagacatccc 742
Query: 543 agaactctacccagatctgataatcttccaaggtggatatttgtctagcacctcatgctg 602
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 743 agaactctacccagatctgatattcttccaaggtggatatttgtctagcacctcatgctg 802
Query: 603 tgacttctttctatggcacttgtccctagaag 634
||||||||||||||||||||||||||||||||
Sbjct: 803 tgacttctttctatggcacttgtccctagaag 834
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 634
Length of database: 1034
Length adjustment: 10
Effective length of query: 624
Effective length of database: 1024
Effective search space: 638976
Effective search space used: 638976
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no045_h20.g1 MSMg01no045_h20.g1 CHROMAT_FILE:
MSMg01no045_h20.g1 PHD_FILE: MSMg01no045_h20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 12:05:27 2005
(607 letters)
>mm_chr2_116160841_116161847
Length = 1007
Score = 891 bits (461), Expect = 0.0
Identities = 502/523 (95%), Gaps = 13/523 (2%)
Strand = Plus / Minus
Query: 98 gttcagacatttaaataataattactcccaaagtgtgtgcaaaagtaaaggggaaagtgt 157
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1007 gttcagacatttaaataataattactcccaaagtgtgtgcaaaagtaaaggggaaagtgt 948
Query: 158 tgtctgataagaataggttctagaatatttatgtaatagaaaagagcgccctgtgtttgg 217
||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||
Sbjct: 947 tgtctgataagaataggttctagaatattcatgtaatagaaaagagcaccctgtgtttgg 888
Query: 218 gctaaagtgtaacatttggttttcattctgcgctattcaaatttacatgcatggaattcc 277
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 887 gctaaagtgtaacatttggttttcattctgcgctattcaattttacatgcatggaattcc 828
Query: 278 ------------cat-gcatgagcaaagtatcagtcaaaatccaccagacagatgtgaaa 324
||| ||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 827 cagtaatatctacatagcaagagcaaagtatcagtcaaaatccaccagacagatgtgaaa 768
Query: 325 attaaattttccagtaagttataatgtaaaagtgaatgctggtgcattggagggttggat 384
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 767 attaaattttccagtaagttataatgtaaaagtgaatgctggtgctttggagggttggat 708
Query: 385 ggcagagggaaccttgtctgtaggtgtgctttgcaactacagcaatgtggcaaattttga 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 707 ggcagagggaaccttgtctgtaggtgtgctttgcaactacagcaatgtggcaaattttga 648
Query: 445 ttacaaaaatctgagacagtactccactaataaggatgagtaagggcaaaggaaatgtcc 504
|||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 647 ttacaaaaatctgagacagtactccactaataaggatgagcaaaggcaaaggaaatgtcc 588
Query: 505 cttagtgactcagatgcttaatatcaaagtaaatatggaagacaggcttctcttctgctt 564
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 587 cttagtgactcagatgcttaatatcaaagtaaatatggaagacaggcttgtcttctgctt 528
Query: 565 cccgcaccaagcacctagccatgctcagtcacagacggtgtgc 607
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 527 cccgcaccaagcacctagccatgctcagtcacagacggtgtgc 485
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 607
Length of database: 1007
Length adjustment: 10
Effective length of query: 597
Effective length of database: 997
Effective search space: 595209
Effective search space used: 595209
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
